Wall clock time and date at job start Tue Mar 31 2020 06:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46957 * 2 1 4 4 C 1.50700 * 109.46920 * 119.99480 * 2 1 3 5 5 C 1.34506 * 125.79431 * 260.00328 * 4 2 1 6 6 C 1.41382 * 106.83991 * 180.02562 * 5 4 2 7 7 C 1.34509 * 106.84416 * 359.97438 * 6 5 4 8 8 O 1.34308 * 108.41933 * 359.74489 * 7 6 5 9 9 N 1.46900 * 109.47352 * 240.00137 * 2 1 3 10 10 C 1.46899 * 110.99430 * 306.04646 * 9 2 1 11 11 C 1.46897 * 111.00236 * 69.99920 * 9 2 1 12 12 C 1.50692 * 109.47333 * 170.00259 * 11 9 2 13 13 O 1.21300 * 119.99794 * 359.97438 * 12 11 9 14 14 N 1.34778 * 120.00235 * 180.02562 * 12 11 9 15 15 C 1.39941 * 120.00087 * 174.26342 * 14 12 11 16 16 C 1.38681 * 120.11392 * 335.23703 * 15 14 12 17 17 C 1.38218 * 120.01988 * 180.25804 * 16 15 14 18 18 C 1.38395 * 120.24798 * 359.73894 * 17 16 15 19 19 C 1.38080 * 120.23091 * 359.97438 * 18 17 16 20 20 C 1.38997 * 119.97739 * 0.02562 * 19 18 17 21 21 S 1.76197 * 120.12568 * 179.97438 * 20 19 18 22 22 C 1.76198 * 99.99932 * 5.61221 * 21 20 19 23 23 H 1.08003 * 119.99869 * 354.96559 * 22 21 20 24 24 C 1.38692 * 120.00049 * 174.96540 * 22 21 20 25 25 N 1.31655 * 119.99793 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99774 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46945 * 60.00602 * 26 24 22 28 28 H 1.48499 * 109.46812 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47423 * 299.99867 * 26 24 22 30 30 H 1.08999 * 109.47421 * 299.99931 * 1 2 3 31 31 H 1.09002 * 109.46986 * 59.99822 * 1 2 3 32 32 H 1.09001 * 109.46957 * 179.97438 * 1 2 3 33 33 H 1.07995 * 126.57800 * 359.96210 * 5 4 2 34 34 H 1.08008 * 126.57630 * 180.02562 * 6 5 4 35 35 H 1.07997 * 125.79391 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.46819 * 183.95335 * 10 9 2 37 37 H 1.09001 * 109.47556 * 303.95249 * 10 9 2 38 38 H 1.08997 * 109.47611 * 63.95842 * 10 9 2 39 39 H 1.09002 * 109.46878 * 49.99711 * 11 9 2 40 40 H 1.08999 * 109.46895 * 290.00480 * 11 9 2 41 41 H 0.97001 * 119.99846 * 354.25633 * 14 12 11 42 42 H 1.08005 * 119.98830 * 359.97438 * 16 15 14 43 43 H 1.08003 * 119.87457 * 179.76668 * 17 16 15 44 44 H 1.08009 * 119.88410 * 180.02562 * 18 17 16 45 45 H 1.07996 * 120.01487 * 180.02562 * 19 18 17 46 46 H 0.96997 * 119.99452 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.4731 -0.1190 2.3554 6 6 2.8441 -1.1542 3.2439 7 6 2.6074 -2.3162 2.6092 8 8 2.1101 -2.0414 1.3922 9 7 2.0197 -0.6925 -1.1994 10 6 1.4343 -2.0354 -1.3077 11 6 1.7530 0.0972 -2.4090 12 6 2.4775 -0.5163 -3.5794 13 8 3.1503 -1.5131 -3.4212 14 7 2.3787 0.0432 -4.8015 15 6 3.1446 -0.4533 -5.8623 16 6 4.3310 -1.1252 -5.6091 17 6 5.0887 -1.6101 -6.6586 18 6 4.6655 -1.4327 -7.9642 19 6 3.4829 -0.7705 -8.2279 20 6 2.7136 -0.2789 -7.1798 21 16 1.2042 0.5674 -7.5117 22 6 1.1047 0.3424 -9.2565 23 1 1.9170 -0.1322 -9.7869 24 6 -0.0168 0.7747 -9.9485 25 7 -1.0067 1.3536 -9.3019 26 14 -0.1219 0.5368 -11.7984 27 1 -0.0402 -0.9114 -12.1166 28 1 -1.4118 1.0800 -12.2947 29 1 1.0021 1.2520 -12.4542 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.5330 0.9428 2.5433 34 1 3.2408 -1.0349 4.2414 35 1 2.7828 -3.3030 3.0116 36 1 1.8664 -2.5520 -2.1648 37 1 1.6466 -2.5987 -0.3990 38 1 0.3556 -1.9520 -1.4399 39 1 2.1025 1.1189 -2.2603 40 1 0.6815 0.1053 -2.6087 41 1 1.7766 0.7900 -4.9459 42 1 4.6654 -1.2656 -4.5918 43 1 6.0142 -2.1297 -6.4588 44 1 5.2619 -1.8144 -8.7798 45 1 3.1558 -0.6344 -9.2481 46 1 -1.7909 1.6562 -9.7860 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072583561.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:35 Heat of formation + Delta-G solvation = 11.062714 kcal Electronic energy + Delta-G solvation = -28918.936452 eV Core-core repulsion = 24901.544361 eV Total energy + Delta-G solvation = -4017.392091 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.129 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.46398 -41.55702 -39.62914 -38.41245 -35.74731 -34.71782 -34.00974 -32.69141 -31.86785 -30.84165 -29.31819 -28.80147 -27.84751 -26.48544 -24.09557 -23.69293 -22.76920 -22.54761 -21.20887 -20.85536 -20.11605 -18.56659 -18.29874 -17.84438 -17.54630 -17.04711 -16.99257 -16.68541 -16.50698 -16.14915 -15.72527 -15.38248 -15.27853 -14.86970 -14.67151 -14.57671 -14.43815 -14.12076 -13.91238 -13.79156 -13.49957 -13.36272 -13.13533 -12.98874 -12.93173 -12.88207 -12.78311 -12.56282 -12.26359 -12.20853 -12.10156 -11.64650 -11.38895 -11.34600 -10.76716 -10.67224 -10.63302 -10.34457 -9.52675 -9.21183 -9.12150 -8.48929 -8.32826 -6.22484 0.38827 0.54301 0.87020 1.26950 1.40307 1.44572 1.57996 1.64294 1.75949 2.01189 2.16999 2.18352 2.86520 2.92612 3.00522 3.16146 3.62011 3.67558 4.04081 4.10232 4.12253 4.19652 4.25461 4.28313 4.33366 4.36805 4.47300 4.52525 4.56998 4.68477 4.70399 4.72358 4.83608 4.95065 5.03467 5.07066 5.08494 5.20511 5.32699 5.40686 5.44946 5.50265 5.65053 5.67307 5.73370 5.82957 5.92962 6.12965 6.22657 6.32753 6.48969 6.96530 7.14780 8.59478 Molecular weight = 360.13amu Principal moments of inertia in cm(-1) A = 0.016563 B = 0.002162 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.078049 B =12946.766939 C =14227.591582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.162 3.838 3 H 0.132 0.868 4 C -0.010 4.010 5 C -0.217 4.217 6 C -0.224 4.224 7 C -0.057 4.057 8 O -0.186 6.186 9 N -0.528 5.528 10 C 0.014 3.986 11 C 0.040 3.960 12 C 0.511 3.489 13 O -0.537 6.537 14 N -0.658 5.658 15 C 0.131 3.869 16 C -0.123 4.123 17 C -0.130 4.130 18 C -0.118 4.118 19 C -0.143 4.143 20 C -0.130 4.130 21 S -0.011 6.011 22 C -0.564 4.564 23 H 0.096 0.904 24 C 0.027 3.973 25 N -0.901 5.901 26 Si 0.990 3.010 27 H -0.266 1.266 28 H -0.274 1.274 29 H -0.262 1.262 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.164 0.836 34 H 0.165 0.835 35 H 0.226 0.774 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.036 0.964 39 H 0.140 0.860 40 H 0.090 0.910 41 H 0.416 0.584 42 H 0.140 0.860 43 H 0.148 0.852 44 H 0.144 0.856 45 H 0.125 0.875 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.210 -1.700 20.739 21.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.054 3.946 3 H 0.150 0.850 4 C -0.060 4.060 5 C -0.236 4.236 6 C -0.243 4.243 7 C -0.124 4.124 8 O -0.083 6.083 9 N -0.252 5.252 10 C -0.133 4.133 11 C -0.091 4.091 12 C 0.300 3.700 13 O -0.414 6.414 14 N -0.303 5.303 15 C 0.028 3.972 16 C -0.145 4.145 17 C -0.152 4.152 18 C -0.138 4.138 19 C -0.168 4.168 20 C -0.247 4.247 21 S 0.240 5.760 22 C -0.711 4.711 23 H 0.114 0.886 24 C -0.179 4.179 25 N -0.536 5.536 26 Si 0.812 3.188 27 H -0.191 1.191 28 H -0.199 1.199 29 H -0.187 1.187 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.181 0.819 34 H 0.183 0.817 35 H 0.243 0.757 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.054 0.946 39 H 0.157 0.843 40 H 0.107 0.893 41 H 0.253 0.747 42 H 0.157 0.843 43 H 0.166 0.834 44 H 0.162 0.838 45 H 0.143 0.857 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.923 -1.861 21.411 22.049 hybrid contribution -0.529 -0.297 -1.943 2.036 sum 4.394 -2.159 19.468 20.074 Atomic orbital electron populations 1.22499 0.94669 1.02930 1.04226 1.20448 0.93938 0.96976 0.83253 0.85047 1.22470 1.04873 0.80681 0.97975 1.21836 1.06247 1.01621 0.93923 1.22123 1.07492 0.92067 1.02618 1.24742 1.02257 1.01922 0.83473 1.84094 1.65156 1.25175 1.33864 1.61844 1.59402 1.02955 1.00967 1.22667 0.96961 0.90237 1.03460 1.22053 1.00119 0.99452 0.87432 1.21206 0.81531 0.83606 0.83703 1.90614 1.41133 1.25385 1.84274 1.43496 1.43133 1.35680 1.07995 1.17379 0.92888 1.01537 0.85348 1.21296 0.92755 0.99592 1.00858 1.21223 1.00728 1.01531 0.91757 1.21267 0.95842 0.99055 0.97683 1.21371 0.96040 1.00789 0.98641 1.22407 1.02110 1.05237 0.94899 1.82815 1.19286 1.63220 1.10685 1.23578 1.08088 1.46919 0.92533 0.88628 1.25998 0.93775 0.93372 1.04801 1.70088 1.07483 1.37436 1.38568 0.85111 0.78213 0.79146 0.76367 1.19081 1.19908 1.18662 0.90070 0.90293 0.92709 0.81886 0.81696 0.75743 0.92001 0.90140 0.94591 0.84268 0.89261 0.74669 0.84268 0.83450 0.83839 0.85732 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.65 8.43 71.98 0.61 -2.04 16 2 C 0.16 2.74 2.78 44.17 0.12 2.87 16 3 H 0.13 1.65 7.92 -2.39 -0.02 1.63 16 4 C -0.01 -0.19 6.03 24.83 0.15 -0.04 16 5 C -0.22 -3.75 10.80 22.19 0.24 -3.51 16 6 C -0.22 -3.58 10.91 22.19 0.24 -3.34 16 7 C -0.06 -0.95 12.09 66.97 0.81 -0.14 16 8 O -0.19 -4.08 7.80 -2.59 -0.02 -4.10 16 9 N -0.53 -11.88 4.44 -906.07 -4.02 -15.90 16 10 C 0.01 0.36 8.33 127.69 1.06 1.42 16 11 C 0.04 0.83 5.02 85.56 0.43 1.26 16 12 C 0.51 15.47 7.36 87.65 0.64 16.12 16 13 O -0.54 -19.59 11.48 -3.09 -0.04 -19.63 16 14 N -0.66 -21.83 5.16 -302.99 -1.56 -23.39 16 15 C 0.13 5.12 6.44 38.31 0.25 5.37 16 16 C -0.12 -4.49 8.71 22.37 0.19 -4.29 16 17 C -0.13 -4.22 10.04 22.30 0.22 -3.99 16 18 C -0.12 -4.03 10.03 22.27 0.22 -3.80 16 19 C -0.14 -5.97 9.26 22.41 0.21 -5.76 16 20 C -0.13 -5.73 6.12 22.81 0.14 -5.59 16 21 S -0.01 -0.54 20.37 -56.49 -1.15 -1.69 16 22 C -0.56 -30.35 9.08 67.93 0.62 -29.74 16 23 H 0.10 4.95 4.81 -2.91 -0.01 4.94 16 24 C 0.03 1.42 5.49 84.83 0.47 1.89 16 25 N -0.90 -50.15 13.22 21.63 0.29 -49.86 16 26 Si 0.99 41.42 29.55 68.60 2.03 43.44 16 27 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 28 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 29 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 0.99 6.91 -2.39 -0.02 0.97 16 32 H 0.05 0.93 6.41 -2.39 -0.02 0.92 16 33 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 34 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 35 H 0.23 2.07 8.06 -2.91 -0.02 2.04 16 36 H 0.06 1.92 5.88 -2.39 -0.01 1.90 16 37 H 0.08 2.04 5.07 -2.39 -0.01 2.02 16 38 H 0.04 0.81 6.46 -2.39 -0.02 0.79 16 39 H 0.14 2.05 7.93 -2.39 -0.02 2.03 16 40 H 0.09 1.59 7.06 -2.39 -0.02 1.58 16 41 H 0.42 12.80 7.66 -92.71 -0.71 12.09 16 42 H 0.14 5.06 5.79 -2.91 -0.02 5.05 16 43 H 0.15 3.74 8.06 -2.91 -0.02 3.71 16 44 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 45 H 0.13 5.46 4.93 -2.91 -0.01 5.45 16 46 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -69.89 383.84 2.48 -67.42 By element: Atomic # 1 Polarization: 36.72 SS G_CDS: 0.33 Total: 37.05 kcal Atomic # 6 Polarization: -39.96 SS G_CDS: 6.63 Total: -33.34 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -5.30 Total: -89.16 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.06 Total: -23.73 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 16 Polarization: -0.54 SS G_CDS: -1.15 Total: -1.69 kcal Total: -69.89 2.48 -67.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072583561.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.480 kcal (2) G-P(sol) polarization free energy of solvation -69.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds