Wall clock time and date at job start Tue Mar 31 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47266 * 2 1 4 4 C 1.50697 * 109.47430 * 240.00042 * 2 1 3 5 5 C 1.34515 * 125.79186 * 99.70975 * 4 2 1 6 6 C 1.41376 * 106.84545 * 179.89426 * 5 4 2 7 7 C 1.34521 * 106.83744 * 0.37221 * 6 5 4 8 8 O 1.34295 * 108.41902 * 359.77481 * 7 6 5 9 9 N 1.46897 * 109.47377 * 119.99937 * 2 1 3 10 10 C 1.46904 * 111.00473 * 176.04521 * 9 2 1 11 11 C 1.46897 * 111.00140 * 300.00467 * 9 2 1 12 12 C 1.50704 * 109.47323 * 169.99900 * 11 9 2 13 13 O 1.21293 * 119.99896 * 359.97438 * 12 11 9 14 14 N 1.34776 * 119.99714 * 179.97438 * 12 11 9 15 15 C 1.39939 * 119.99901 * 174.25918 * 14 12 11 16 16 C 1.38687 * 120.10977 * 335.24676 * 15 14 12 17 17 C 1.38224 * 120.01623 * 179.97438 * 16 15 14 18 18 C 1.38396 * 120.25295 * 0.02562 * 17 16 15 19 19 C 1.38084 * 120.22415 * 359.97438 * 18 17 16 20 20 C 1.38995 * 119.98080 * 359.74150 * 19 18 17 21 21 S 1.76194 * 120.12544 * 180.25546 * 20 19 18 22 22 C 1.76200 * 100.00311 * 5.61279 * 21 20 19 23 23 H 1.08001 * 119.99448 * 354.97095 * 22 21 20 24 24 C 1.38684 * 120.00253 * 174.96564 * 22 21 20 25 25 N 1.31649 * 119.99982 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00137 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46985 * 89.99883 * 26 24 22 28 28 H 1.48492 * 109.47337 * 209.99866 * 26 24 22 29 29 H 1.48496 * 109.47054 * 330.00158 * 26 24 22 30 30 H 1.09005 * 109.47045 * 300.00039 * 1 2 3 31 31 H 1.08997 * 109.47291 * 60.00017 * 1 2 3 32 32 H 1.09003 * 109.47266 * 179.97438 * 1 2 3 33 33 H 1.08004 * 126.57593 * 0.03576 * 5 4 2 34 34 H 1.07999 * 126.58473 * 180.16712 * 6 5 4 35 35 H 1.08002 * 125.78283 * 179.74731 * 7 6 5 36 36 H 1.09003 * 109.46431 * 60.00134 * 10 9 2 37 37 H 1.08996 * 109.47362 * 180.02562 * 10 9 2 38 38 H 1.08997 * 109.46775 * 300.00712 * 10 9 2 39 39 H 1.09001 * 109.46811 * 289.99771 * 11 9 2 40 40 H 1.08998 * 109.47424 * 49.99509 * 11 9 2 41 41 H 0.96998 * 120.00389 * 354.26207 * 14 12 11 42 42 H 1.07994 * 119.99490 * 359.95011 * 16 15 14 43 43 H 1.08001 * 119.87370 * 180.02562 * 17 16 15 44 44 H 1.07992 * 119.88489 * 179.97438 * 18 17 16 45 45 H 1.08007 * 120.00774 * 180.02562 * 19 18 17 46 46 H 0.96997 * 120.00345 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 2.4681 -0.1191 -2.3573 6 6 2.8433 -1.1542 -3.2443 7 6 2.6065 -2.3163 -2.6095 8 8 2.1154 -2.0413 -1.3902 9 7 2.0197 -0.6925 1.1994 10 6 3.4851 -0.7945 1.1870 11 6 1.5486 -0.0264 2.4210 12 6 1.8580 -0.8912 3.6159 13 8 2.4156 -1.9577 3.4646 14 7 1.5150 -0.4795 4.8525 15 6 1.6923 -1.3319 5.9481 16 6 1.7174 -2.7062 5.7633 17 6 1.8931 -3.5464 6.8467 18 6 2.0442 -3.0220 8.1185 19 6 2.0209 -1.6553 8.3141 20 6 1.8507 -0.8014 7.2307 21 16 1.8271 0.9434 7.4750 22 6 2.2223 1.0176 9.1905 23 1 2.3132 0.1067 9.7635 24 6 2.4169 2.2456 9.8048 25 7 2.3057 3.3560 9.1064 26 14 2.8366 2.3242 11.6234 27 1 4.3114 2.2852 11.7931 28 1 2.3052 3.5852 12.2000 29 1 2.2270 1.1647 12.3226 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 2.5232 0.9427 -2.5472 34 1 3.2403 -1.0349 -4.2416 35 1 2.7813 -3.3030 -3.0123 36 1 3.9186 0.2052 1.1591 37 1 3.8209 -1.3117 2.0858 38 1 3.8029 -1.3531 0.3067 39 1 2.0518 0.9345 2.5280 40 1 0.4722 0.1323 2.3564 41 1 1.1453 0.4077 4.9832 42 1 1.5991 -3.1201 4.7729 43 1 1.9127 -4.6163 6.7002 44 1 2.1808 -3.6839 8.9608 45 1 2.1396 -1.2497 9.3081 46 1 2.4422 4.2149 9.5359 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072583562.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:41 Heat of formation + Delta-G solvation = 28.513700 kcal Electronic energy + Delta-G solvation = -28896.257837 eV Core-core repulsion = 24879.622477 eV Total energy + Delta-G solvation = -4016.635359 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.129 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.76311 -40.26422 -38.33826 -37.15529 -34.36639 -33.23254 -32.77262 -32.06429 -30.31819 -29.85444 -28.97965 -27.47339 -25.89829 -24.88956 -23.05171 -22.33989 -21.96393 -21.54372 -20.14374 -19.86605 -18.38964 -17.74119 -16.87405 -16.80391 -16.32767 -16.06067 -15.88601 -15.27305 -15.13426 -14.97629 -14.65321 -14.18654 -14.02080 -13.76836 -13.51139 -13.18171 -12.98535 -12.93437 -12.86337 -12.78755 -12.59350 -12.31997 -12.09610 -11.84683 -11.67895 -11.54764 -11.38825 -11.29826 -11.24286 -11.07327 -10.40020 -10.10905 -10.09611 -9.84082 -9.56863 -9.31704 -8.80988 -8.66737 -8.65712 -8.53073 -7.63898 -6.54842 -6.52958 -4.25473 1.55210 1.86160 2.09684 2.39953 2.82396 2.89583 2.98218 3.08788 3.12950 3.16132 3.34013 3.81059 3.96429 4.32156 4.46908 4.71322 4.75825 4.79751 4.86985 4.88711 4.96643 5.03244 5.09248 5.12469 5.31400 5.45369 5.49049 5.52540 5.62404 5.66074 5.68325 5.69423 5.86128 5.90258 5.93639 6.06419 6.20882 6.23391 6.26597 6.57867 6.66841 6.72492 6.86792 6.92443 7.06093 7.13051 7.23163 7.44172 7.69738 7.79051 8.11748 8.41514 8.94119 10.52622 Molecular weight = 360.13amu Principal moments of inertia in cm(-1) A = 0.016470 B = 0.002153 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.674362 B =13004.497186 C =14165.837771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.159 3.841 3 H 0.073 0.927 4 C 0.009 3.991 5 C -0.215 4.215 6 C -0.217 4.217 7 C -0.044 4.044 8 O -0.155 6.155 9 N -0.515 5.515 10 C 0.019 3.981 11 C 0.030 3.970 12 C 0.513 3.487 13 O -0.508 6.508 14 N -0.657 5.657 15 C 0.129 3.871 16 C -0.112 4.112 17 C -0.145 4.145 18 C -0.119 4.119 19 C -0.128 4.128 20 C -0.107 4.107 21 S 0.027 5.973 22 C -0.543 4.543 23 H 0.095 0.905 24 C 0.077 3.923 25 N -0.866 5.866 26 Si 0.925 3.075 27 H -0.273 1.273 28 H -0.280 1.280 29 H -0.268 1.268 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.200 0.800 36 H 0.023 0.977 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.113 0.887 41 H 0.411 0.589 42 H 0.138 0.862 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.138 0.862 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.280 -5.589 -19.503 20.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.051 3.949 3 H 0.091 0.909 4 C -0.043 4.043 5 C -0.235 4.235 6 C -0.236 4.236 7 C -0.112 4.112 8 O -0.050 6.050 9 N -0.240 5.240 10 C -0.129 4.129 11 C -0.101 4.101 12 C 0.299 3.701 13 O -0.383 6.383 14 N -0.302 5.302 15 C 0.027 3.973 16 C -0.133 4.133 17 C -0.169 4.169 18 C -0.139 4.139 19 C -0.154 4.154 20 C -0.224 4.224 21 S 0.281 5.719 22 C -0.690 4.690 23 H 0.113 0.887 24 C -0.133 4.133 25 N -0.500 5.500 26 Si 0.750 3.250 27 H -0.199 1.199 28 H -0.205 1.205 29 H -0.192 1.192 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.217 0.783 36 H 0.041 0.959 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.131 0.869 41 H 0.247 0.753 42 H 0.155 0.845 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.155 0.845 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.388 -5.612 -20.152 21.055 hybrid contribution 0.855 0.508 1.761 2.022 sum -1.533 -5.104 -18.392 19.148 Atomic orbital electron populations 1.21976 0.92506 1.03752 1.02501 1.20211 0.96165 0.93851 0.84649 0.90943 1.22149 1.03909 0.80935 0.97272 1.21549 1.07179 1.00547 0.94190 1.21778 1.07767 0.92224 1.01809 1.24096 1.02656 1.00412 0.84050 1.84146 1.64082 1.24334 1.32397 1.61699 1.12046 1.50754 0.99460 1.22586 0.85596 1.00013 1.04657 1.22077 1.03266 0.95796 0.88953 1.20401 0.78652 0.87393 0.83638 1.90632 1.39684 1.22838 1.85109 1.43387 1.62772 1.18469 1.05568 1.17179 1.05488 0.89621 0.85057 1.21101 1.01226 0.91090 0.99926 1.20770 1.04910 0.98681 0.92540 1.20963 1.01388 0.94949 0.96634 1.21282 1.02456 0.92661 0.99037 1.22434 1.03382 1.02658 0.93950 1.82997 1.81623 0.92678 1.14634 1.23251 1.56009 0.96264 0.93501 0.88739 1.25085 0.93735 0.94522 0.99970 1.69990 1.45186 0.97983 1.36826 0.86049 0.79009 0.78161 0.81796 1.19900 1.20517 1.19198 0.91189 0.91453 0.90948 0.83676 0.83643 0.78303 0.95851 0.88852 0.91419 0.91155 0.86936 0.75278 0.84483 0.87021 0.87145 0.84451 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.97 37.16 0.33 -0.88 16 2 C 0.16 1.53 2.53 -68.87 -0.17 1.36 16 3 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 4 C 0.01 0.09 4.63 -35.63 -0.16 -0.07 16 5 C -0.21 -2.03 10.80 -39.70 -0.43 -2.45 16 6 C -0.22 -1.88 10.91 -39.70 -0.43 -2.32 16 7 C -0.04 -0.39 12.09 29.42 0.36 -0.04 16 8 O -0.16 -1.82 10.18 5.73 0.06 -1.76 16 9 N -0.51 -6.14 4.35 -237.73 -1.04 -7.17 16 10 C 0.02 0.24 8.90 60.07 0.53 0.77 16 11 C 0.03 0.34 5.27 -4.98 -0.03 0.31 16 12 C 0.51 7.89 7.33 -10.98 -0.08 7.81 16 13 O -0.51 -9.24 11.51 5.55 0.06 -9.18 16 14 N -0.66 -10.91 5.16 -9.70 -0.05 -10.96 16 15 C 0.13 2.52 6.44 -83.44 -0.54 1.98 16 16 C -0.11 -2.09 8.71 -39.42 -0.34 -2.44 16 17 C -0.15 -2.54 10.04 -39.53 -0.40 -2.94 16 18 C -0.12 -2.14 10.03 -39.58 -0.40 -2.54 16 19 C -0.13 -2.68 9.26 -39.36 -0.36 -3.05 16 20 C -0.11 -2.32 6.12 -38.75 -0.24 -2.56 16 21 S 0.03 0.65 20.37 -107.50 -2.19 -1.54 16 22 C -0.54 -14.26 9.08 30.90 0.28 -13.98 16 23 H 0.10 2.39 4.81 -52.49 -0.25 2.14 16 24 C 0.08 2.01 5.49 -17.47 -0.10 1.92 16 25 N -0.87 -23.62 13.22 55.48 0.73 -22.89 16 26 Si 0.92 20.09 29.55 -169.99 -5.02 15.07 16 27 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 28 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 29 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 30 H 0.07 0.48 6.20 -51.93 -0.32 0.16 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.20 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.09 1.40 5.82 -51.93 -0.30 1.10 16 38 H 0.07 0.86 6.62 -51.93 -0.34 0.52 16 39 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 40 H 0.11 1.02 5.83 -51.93 -0.30 0.72 16 41 H 0.41 6.27 7.66 -40.82 -0.31 5.96 16 42 H 0.14 2.56 5.79 -52.49 -0.30 2.25 16 43 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 44 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 45 H 0.14 2.96 4.93 -52.48 -0.26 2.71 16 46 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 389.19 15.07 5.87 5.87 Total: -1.00 -31.43 389.19 -9.51 -40.95 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -5.76 Total: 10.74 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -2.18 Total: -19.11 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: -0.35 Total: -41.02 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.12 Total: -10.94 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 0.65 SS G_CDS: -2.19 Total: -1.54 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.43 -9.51 -40.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072583562.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.462 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds