Wall clock time and date at job start Tue Mar 31 2020 06:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47266 * 2 1 4 4 C 1.50697 * 109.47430 * 240.00042 * 2 1 3 5 5 C 1.34515 * 125.79186 * 99.70975 * 4 2 1 6 6 C 1.41376 * 106.84545 * 179.89426 * 5 4 2 7 7 C 1.34521 * 106.83744 * 0.37221 * 6 5 4 8 8 O 1.34295 * 108.41902 * 359.77481 * 7 6 5 9 9 N 1.46897 * 109.47377 * 119.99937 * 2 1 3 10 10 C 1.46904 * 111.00473 * 176.04521 * 9 2 1 11 11 C 1.46897 * 111.00140 * 300.00467 * 9 2 1 12 12 C 1.50704 * 109.47323 * 169.99900 * 11 9 2 13 13 O 1.21293 * 119.99896 * 359.97438 * 12 11 9 14 14 N 1.34776 * 119.99714 * 179.97438 * 12 11 9 15 15 C 1.39939 * 119.99901 * 174.25918 * 14 12 11 16 16 C 1.38687 * 120.10977 * 335.24676 * 15 14 12 17 17 C 1.38224 * 120.01623 * 179.97438 * 16 15 14 18 18 C 1.38396 * 120.25295 * 0.02562 * 17 16 15 19 19 C 1.38084 * 120.22415 * 359.97438 * 18 17 16 20 20 C 1.38995 * 119.98080 * 359.74150 * 19 18 17 21 21 S 1.76194 * 120.12544 * 180.25546 * 20 19 18 22 22 C 1.76200 * 100.00311 * 5.61279 * 21 20 19 23 23 H 1.08001 * 119.99448 * 354.97095 * 22 21 20 24 24 C 1.38684 * 120.00253 * 174.96564 * 22 21 20 25 25 N 1.31649 * 119.99982 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00137 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46985 * 89.99883 * 26 24 22 28 28 H 1.48492 * 109.47337 * 209.99866 * 26 24 22 29 29 H 1.48496 * 109.47054 * 330.00158 * 26 24 22 30 30 H 1.09005 * 109.47045 * 300.00039 * 1 2 3 31 31 H 1.08997 * 109.47291 * 60.00017 * 1 2 3 32 32 H 1.09003 * 109.47266 * 179.97438 * 1 2 3 33 33 H 1.08004 * 126.57593 * 0.03576 * 5 4 2 34 34 H 1.07999 * 126.58473 * 180.16712 * 6 5 4 35 35 H 1.08002 * 125.78283 * 179.74731 * 7 6 5 36 36 H 1.09003 * 109.46431 * 60.00134 * 10 9 2 37 37 H 1.08996 * 109.47362 * 180.02562 * 10 9 2 38 38 H 1.08997 * 109.46775 * 300.00712 * 10 9 2 39 39 H 1.09001 * 109.46811 * 289.99771 * 11 9 2 40 40 H 1.08998 * 109.47424 * 49.99509 * 11 9 2 41 41 H 0.96998 * 120.00389 * 354.26207 * 14 12 11 42 42 H 1.07994 * 119.99490 * 359.95011 * 16 15 14 43 43 H 1.08001 * 119.87370 * 180.02562 * 17 16 15 44 44 H 1.07992 * 119.88489 * 179.97438 * 18 17 16 45 45 H 1.08007 * 120.00774 * 180.02562 * 19 18 17 46 46 H 0.96997 * 120.00345 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 2.4681 -0.1191 -2.3573 6 6 2.8433 -1.1542 -3.2443 7 6 2.6065 -2.3163 -2.6095 8 8 2.1154 -2.0413 -1.3902 9 7 2.0197 -0.6925 1.1994 10 6 3.4851 -0.7945 1.1870 11 6 1.5486 -0.0264 2.4210 12 6 1.8580 -0.8912 3.6159 13 8 2.4156 -1.9577 3.4646 14 7 1.5150 -0.4795 4.8525 15 6 1.6923 -1.3319 5.9481 16 6 1.7174 -2.7062 5.7633 17 6 1.8931 -3.5464 6.8467 18 6 2.0442 -3.0220 8.1185 19 6 2.0209 -1.6553 8.3141 20 6 1.8507 -0.8014 7.2307 21 16 1.8271 0.9434 7.4750 22 6 2.2223 1.0176 9.1905 23 1 2.3132 0.1067 9.7635 24 6 2.4169 2.2456 9.8048 25 7 2.3057 3.3560 9.1064 26 14 2.8366 2.3242 11.6234 27 1 4.3114 2.2852 11.7931 28 1 2.3052 3.5852 12.2000 29 1 2.2270 1.1647 12.3226 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 2.5232 0.9427 -2.5472 34 1 3.2403 -1.0349 -4.2416 35 1 2.7813 -3.3030 -3.0123 36 1 3.9186 0.2052 1.1591 37 1 3.8209 -1.3117 2.0858 38 1 3.8029 -1.3531 0.3067 39 1 2.0518 0.9345 2.5280 40 1 0.4722 0.1323 2.3564 41 1 1.1453 0.4077 4.9832 42 1 1.5991 -3.1201 4.7729 43 1 1.9127 -4.6163 6.7002 44 1 2.1808 -3.6839 8.9608 45 1 2.1396 -1.2497 9.3081 46 1 2.4422 4.2149 9.5359 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072583562.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:40 Heat of formation + Delta-G solvation = 9.763004 kcal Electronic energy + Delta-G solvation = -28897.070928 eV Core-core repulsion = 24879.622477 eV Total energy + Delta-G solvation = -4017.448450 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.129 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.47547 -41.55801 -39.57899 -38.28747 -35.75252 -34.71958 -33.96322 -32.85277 -31.87136 -31.06068 -29.85640 -28.50711 -27.84644 -25.78007 -24.17757 -23.74217 -22.90892 -22.53304 -21.21724 -20.81299 -20.11749 -18.68756 -18.30279 -17.82826 -17.56024 -17.23454 -16.99891 -16.81032 -16.18421 -16.15520 -15.72065 -15.54333 -15.28876 -14.94911 -14.62448 -14.59671 -14.38837 -14.00229 -13.92122 -13.64968 -13.45631 -13.36225 -13.20519 -13.00038 -12.94233 -12.85311 -12.80761 -12.60901 -12.45486 -12.14984 -12.09651 -11.65096 -11.39920 -11.34149 -10.79578 -10.66814 -10.63272 -10.34251 -9.43410 -9.35269 -9.13520 -8.49097 -8.32811 -6.22538 0.38759 0.54293 0.84427 1.27180 1.38609 1.45334 1.58621 1.63794 1.72678 1.99254 2.17620 2.18090 2.84120 2.86768 3.00460 3.15787 3.63141 3.64142 4.07596 4.09082 4.12876 4.17716 4.21882 4.25990 4.30321 4.33571 4.47396 4.52062 4.53151 4.68131 4.70964 4.77757 4.85691 4.98454 5.00941 5.03378 5.07712 5.23832 5.28334 5.32792 5.44530 5.50329 5.61620 5.65705 5.73417 5.80617 5.90099 6.13201 6.22694 6.34959 6.48534 6.96576 7.14193 8.59577 Molecular weight = 360.13amu Principal moments of inertia in cm(-1) A = 0.016470 B = 0.002153 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.674362 B =13004.497186 C =14165.837771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.159 3.841 3 H 0.091 0.909 4 C -0.013 4.013 5 C -0.218 4.218 6 C -0.224 4.224 7 C -0.053 4.053 8 O -0.183 6.183 9 N -0.530 5.530 10 C 0.028 3.972 11 C 0.037 3.963 12 C 0.512 3.488 13 O -0.536 6.536 14 N -0.658 5.658 15 C 0.131 3.869 16 C -0.123 4.123 17 C -0.130 4.130 18 C -0.118 4.118 19 C -0.143 4.143 20 C -0.130 4.130 21 S -0.011 6.011 22 C -0.563 4.563 23 H 0.096 0.904 24 C 0.027 3.973 25 N -0.901 5.901 26 Si 0.990 3.010 27 H -0.270 1.270 28 H -0.273 1.273 29 H -0.261 1.261 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.162 0.838 34 H 0.167 0.833 35 H 0.227 0.773 36 H 0.034 0.966 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.139 0.861 41 H 0.416 0.584 42 H 0.140 0.860 43 H 0.148 0.852 44 H 0.144 0.856 45 H 0.125 0.875 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.458 -6.357 -20.270 21.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.052 3.948 3 H 0.108 0.892 4 C -0.064 4.064 5 C -0.237 4.237 6 C -0.243 4.243 7 C -0.120 4.120 8 O -0.079 6.079 9 N -0.255 5.255 10 C -0.120 4.120 11 C -0.093 4.093 12 C 0.300 3.700 13 O -0.413 6.413 14 N -0.303 5.303 15 C 0.029 3.971 16 C -0.145 4.145 17 C -0.152 4.152 18 C -0.138 4.138 19 C -0.168 4.168 20 C -0.246 4.246 21 S 0.240 5.760 22 C -0.710 4.710 23 H 0.114 0.886 24 C -0.180 4.180 25 N -0.536 5.536 26 Si 0.812 3.188 27 H -0.195 1.195 28 H -0.198 1.198 29 H -0.185 1.185 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.179 0.821 34 H 0.184 0.816 35 H 0.243 0.757 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.157 0.843 41 H 0.253 0.747 42 H 0.157 0.843 43 H 0.165 0.835 44 H 0.161 0.839 45 H 0.142 0.858 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.578 -6.414 -20.957 22.067 hybrid contribution 0.915 0.553 1.830 2.119 sum -1.663 -5.860 -19.126 20.073 Atomic orbital electron populations 1.21968 0.91449 1.03045 1.03885 1.20346 0.96963 0.94277 0.83234 0.89185 1.22403 1.05070 0.80806 0.98074 1.21864 1.06351 1.01577 0.93942 1.22120 1.07576 0.91943 1.02679 1.24752 1.01994 1.01963 0.83287 1.84122 1.64863 1.25129 1.33747 1.61632 1.11439 1.52011 1.00424 1.22393 0.86503 1.00164 1.02895 1.22113 1.05059 0.95262 0.86903 1.21163 0.77414 0.87394 0.83999 1.90614 1.40852 1.24377 1.85464 1.43490 1.62869 1.18464 1.05476 1.17376 1.04078 0.90494 0.85201 1.21297 1.01692 0.90872 1.00620 1.21223 1.01895 1.00409 0.91701 1.21265 1.00437 0.94009 0.98122 1.21371 1.03026 0.94119 0.98314 1.22401 1.05835 1.01098 0.95281 1.82821 1.83539 0.95549 1.14132 1.23608 1.56052 0.96684 0.94672 0.88622 1.25994 0.93555 0.94076 1.04338 1.70089 1.46434 0.98492 1.38588 0.85055 0.78779 0.78452 0.76498 1.19481 1.19801 1.18461 0.89855 0.90003 0.92643 0.82054 0.81580 0.75662 0.94714 0.91621 0.91963 0.89218 0.84301 0.74672 0.84268 0.83451 0.83852 0.85753 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.97 71.98 0.65 -1.47 16 2 C 0.16 2.81 2.53 44.17 0.11 2.93 16 3 H 0.09 1.27 8.13 -2.39 -0.02 1.25 16 4 C -0.01 -0.26 4.63 24.83 0.11 -0.14 16 5 C -0.22 -3.76 10.80 22.19 0.24 -3.52 16 6 C -0.22 -3.54 10.91 22.19 0.24 -3.30 16 7 C -0.05 -0.88 12.09 66.97 0.81 -0.07 16 8 O -0.18 -4.22 10.18 -2.40 -0.02 -4.24 16 9 N -0.53 -12.13 4.35 -906.06 -3.95 -16.08 16 10 C 0.03 0.71 8.90 127.69 1.14 1.85 16 11 C 0.04 0.78 5.27 85.56 0.45 1.23 16 12 C 0.51 15.56 7.33 87.66 0.64 16.20 16 13 O -0.54 -19.56 11.51 -3.07 -0.04 -19.60 16 14 N -0.66 -21.86 5.16 -302.99 -1.56 -23.42 16 15 C 0.13 5.12 6.44 38.31 0.25 5.37 16 16 C -0.12 -4.48 8.71 22.37 0.19 -4.28 16 17 C -0.13 -4.21 10.04 22.30 0.22 -3.99 16 18 C -0.12 -4.02 10.03 22.27 0.22 -3.80 16 19 C -0.14 -5.96 9.26 22.41 0.21 -5.76 16 20 C -0.13 -5.71 6.12 22.81 0.14 -5.57 16 21 S -0.01 -0.56 20.37 -56.49 -1.15 -1.71 16 22 C -0.56 -30.28 9.08 67.93 0.62 -29.67 16 23 H 0.10 4.96 4.81 -2.91 -0.01 4.95 16 24 C 0.03 1.41 5.49 84.83 0.47 1.87 16 25 N -0.90 -50.14 13.22 21.63 0.29 -49.85 16 26 Si 0.99 41.44 29.55 68.60 2.03 43.46 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 28 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 29 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 30 H 0.08 0.95 6.20 -2.38 -0.01 0.93 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 34 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 35 H 0.23 2.11 8.06 -2.91 -0.02 2.09 16 36 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 2.01 5.82 -2.39 -0.01 1.99 16 38 H 0.06 1.60 6.62 -2.39 -0.02 1.58 16 39 H 0.09 1.61 8.12 -2.39 -0.02 1.59 16 40 H 0.14 2.21 5.83 -2.39 -0.01 2.20 16 41 H 0.42 12.83 7.66 -92.71 -0.71 12.12 16 42 H 0.14 5.06 5.79 -2.91 -0.02 5.05 16 43 H 0.15 3.74 8.06 -2.91 -0.02 3.71 16 44 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 45 H 0.12 5.46 4.93 -2.91 -0.01 5.45 16 46 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -69.77 389.19 2.62 -67.14 By element: Atomic # 1 Polarization: 36.09 SS G_CDS: 0.32 Total: 36.41 kcal Atomic # 6 Polarization: -38.83 SS G_CDS: 6.71 Total: -32.12 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -5.22 Total: -89.35 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.06 Total: -23.84 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal Atomic # 16 Polarization: -0.56 SS G_CDS: -1.15 Total: -1.71 kcal Total: -69.77 2.62 -67.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072583562.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.906 kcal (2) G-P(sol) polarization free energy of solvation -69.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds