Wall clock time and date at job start Tue Mar 31 2020 06:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31653 * 1 3 3 Si 1.86803 * 119.99820 * 2 1 4 4 H 1.48500 * 109.47195 * 269.99807 * 3 2 1 5 5 H 1.48497 * 109.47127 * 29.99884 * 3 2 1 6 6 H 1.48499 * 109.46960 * 149.99828 * 3 2 1 7 7 C 1.38682 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99668 * 0.02562 * 7 2 1 9 9 S 1.76195 * 120.00272 * 180.02562 * 7 2 1 10 10 C 1.76200 * 100.00279 * 174.90142 * 9 7 2 11 11 C 1.38989 * 120.12143 * 6.87299 * 10 9 7 12 12 C 1.38082 * 119.97981 * 180.02562 * 11 10 9 13 13 C 1.38403 * 120.22324 * 359.97438 * 12 11 10 14 14 C 1.38216 * 120.25303 * 359.72427 * 13 12 11 15 15 C 1.38687 * 120.01626 * 0.55569 * 14 13 12 16 16 N 1.39938 * 120.11223 * 179.72151 * 15 14 13 17 17 C 1.34772 * 120.00103 * 34.42176 * 16 15 14 18 18 O 1.21302 * 119.99967 * 355.96090 * 17 16 15 19 19 C 1.50699 * 119.99977 * 175.95776 * 17 16 15 20 20 N 1.46904 * 109.47103 * 180.02562 * 19 17 16 21 21 C 1.49090 * 111.00018 * 54.50737 * 20 19 17 22 22 C 1.54997 * 106.83764 * 145.35559 * 21 20 19 23 23 C 1.52943 * 103.96184 * 2.39649 * 22 21 20 24 24 H 1.09004 * 110.32635 * 89.48972 * 23 22 21 25 25 C 1.51753 * 116.58480 * 216.28182 * 23 22 21 26 26 C 1.52322 * 107.99941 * 177.10902 * 25 23 22 27 27 C 1.52567 * 111.60900 * 302.71520 * 26 25 23 28 28 C 1.53756 * 111.45001 * 54.43341 * 27 26 25 29 29 C 1.46655 * 111.00000 * 170.00120 * 20 19 17 30 30 H 1.08994 * 110.28958 * 313.99461 * 29 20 19 31 31 H 0.97004 * 119.99882 * 359.97438 * 1 2 3 32 32 H 1.08004 * 120.01591 * 0.02562 * 11 10 9 33 33 H 1.07998 * 119.89177 * 179.97438 * 12 11 10 34 34 H 1.08000 * 119.87113 * 179.97438 * 13 12 11 35 35 H 1.08001 * 119.99477 * 180.27387 * 14 13 12 36 36 H 0.96996 * 120.00061 * 214.41736 * 16 15 14 37 37 H 1.09002 * 109.47190 * 60.00223 * 19 17 16 38 38 H 1.08999 * 109.47278 * 299.99792 * 19 17 16 39 39 H 1.09000 * 109.98789 * 26.01175 * 21 20 19 40 40 H 1.09000 * 110.02183 * 264.71758 * 21 20 19 41 41 H 1.09000 * 110.53211 * 243.77532 * 22 21 20 42 42 H 1.08999 * 110.65221 * 121.07676 * 22 21 20 43 43 H 1.08996 * 109.90125 * 297.10870 * 25 23 22 44 44 H 1.09004 * 109.89938 * 58.15434 * 25 23 22 45 45 H 1.08999 * 109.26219 * 181.99412 * 26 25 23 46 46 H 1.09000 * 108.76324 * 63.10503 * 26 25 23 47 47 H 1.09003 * 109.08394 * 293.92658 * 27 26 25 48 48 H 1.09003 * 109.08761 * 174.93565 * 27 26 25 49 49 H 1.08999 * 109.89257 * 61.86600 * 28 27 26 50 50 H 1.08995 * 109.88955 * 182.89517 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2505 1.6178 0.0000 4 1 2.4980 2.0465 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5480 1.4402 0.7001 7 6 2.0100 -1.2010 0.0005 8 1 1.4699 -2.1363 0.0005 9 16 3.7719 -1.2010 0.0012 10 6 4.0779 -2.9294 0.1559 11 6 3.0236 -3.8328 0.0919 12 6 3.2667 -5.1866 0.2140 13 6 4.5580 -5.6486 0.3997 14 6 5.6142 -4.7589 0.4586 15 6 5.3811 -3.3967 0.3430 16 7 6.4482 -2.4938 0.4081 17 6 7.6509 -2.8345 -0.0957 18 8 7.8289 -3.9494 -0.5393 19 6 8.7746 -1.8304 -0.1080 20 7 9.9704 -2.4410 -0.7040 21 6 9.6699 -2.9974 -2.0541 22 6 10.9413 -2.7937 -2.9169 23 6 11.9457 -2.1634 -1.9509 24 1 12.5172 -2.9383 -1.4399 25 6 12.8792 -1.1162 -2.5295 26 6 13.7374 -0.5721 -1.3947 27 6 12.8824 0.0060 -0.2712 28 6 11.8540 -1.0181 0.2367 29 6 11.0075 -1.4338 -0.9504 30 1 10.5739 -0.5526 -1.4232 31 1 -0.4850 0.8401 0.0004 32 1 2.0146 -3.4762 -0.0533 33 1 2.4464 -5.8873 0.1645 34 1 4.7416 -6.7086 0.4950 35 1 6.6207 -5.1244 0.5992 36 1 6.3224 -1.6228 0.8159 37 1 8.9954 -1.5196 0.9131 38 1 8.4791 -0.9617 -0.6964 39 1 8.8291 -2.4644 -2.4980 40 1 9.4384 -4.0597 -1.9768 41 1 10.7353 -2.1192 -3.7480 42 1 11.3133 -3.7498 -3.2850 43 1 13.5132 -1.5660 -3.2936 44 1 12.2995 -0.3006 -2.9618 45 1 14.3924 0.2084 -1.7817 46 1 14.3477 -1.3829 -0.9969 47 1 12.3562 0.8863 -0.6406 48 1 13.5303 0.2999 0.5547 49 1 12.3679 -1.8869 0.6481 50 1 11.2244 -0.5633 1.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072596753.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:51 Heat of formation + Delta-G solvation = -10.246648 kcal Electronic energy + Delta-G solvation = -29758.538887 eV Core-core repulsion = 25876.055848 eV Total energy + Delta-G solvation = -3882.483040 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.161 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.79440 -39.80205 -37.89242 -35.94081 -34.41560 -32.96258 -32.75267 -30.56306 -30.38775 -29.11892 -28.58926 -26.28869 -25.97553 -22.96200 -22.55742 -22.20557 -21.45002 -20.89126 -20.26063 -19.81996 -18.44847 -16.94369 -16.81405 -16.13831 -15.89621 -15.69971 -15.25218 -15.19811 -14.96617 -14.72617 -14.32107 -14.07447 -13.99088 -13.90810 -13.43824 -13.34887 -13.00834 -12.80127 -12.58640 -12.47721 -12.32871 -12.08914 -11.97804 -11.56406 -11.46761 -11.45323 -11.29180 -11.25437 -11.14046 -10.95892 -10.72100 -10.67708 -10.64748 -10.15772 -10.05321 -9.77733 -9.57003 -9.36211 -8.96105 -8.83089 -8.58094 -7.80532 -6.82622 -6.53619 -4.29885 1.76411 2.00060 2.72506 2.78719 3.08662 3.12511 3.18620 3.36012 3.75149 4.03501 4.19402 4.34836 4.39386 4.44798 4.49736 4.72260 4.76638 4.86883 4.89402 4.96445 5.05239 5.09630 5.15217 5.16730 5.18884 5.24372 5.34390 5.53789 5.56761 5.57759 5.60688 5.65592 5.73970 5.80193 5.80687 5.82311 5.92994 5.94386 6.02840 6.07187 6.14601 6.15759 6.20995 6.50742 6.67364 6.76473 6.81265 6.86693 7.05256 7.14900 7.56692 7.66600 7.70418 8.28753 8.32999 8.87738 10.53745 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.011435 B = 0.002620 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.036550 B =10686.339210 C =12475.715671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.099 3.901 3 Si 0.854 3.146 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.237 1.237 7 C -0.532 4.532 8 H 0.111 0.889 9 S -0.057 6.057 10 C -0.082 4.082 11 C -0.120 4.120 12 C -0.115 4.115 13 C -0.141 4.141 14 C -0.104 4.104 15 C 0.127 3.873 16 N -0.661 5.661 17 C 0.513 3.487 18 O -0.512 6.512 19 C 0.026 3.974 20 N -0.488 5.488 21 C 0.042 3.958 22 C -0.128 4.128 23 C -0.089 4.089 24 H 0.083 0.917 25 C -0.108 4.108 26 C -0.119 4.119 27 C -0.117 4.117 28 C -0.103 4.103 29 C 0.059 3.941 30 H 0.049 0.951 31 H 0.275 0.725 32 H 0.145 0.855 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.133 0.867 36 H 0.409 0.591 37 H 0.106 0.894 38 H 0.068 0.932 39 H 0.042 0.958 40 H 0.099 0.901 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.064 0.936 49 H 0.072 0.928 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.953 -1.376 -1.327 24.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.112 4.112 3 Si 0.678 3.322 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.162 1.162 7 C -0.679 4.679 8 H 0.128 0.872 9 S 0.194 5.806 10 C -0.198 4.198 11 C -0.145 4.145 12 C -0.136 4.136 13 C -0.164 4.164 14 C -0.126 4.126 15 C 0.026 3.974 16 N -0.307 5.307 17 C 0.299 3.701 18 O -0.387 6.387 19 C -0.106 4.106 20 N -0.211 5.211 21 C -0.085 4.085 22 C -0.166 4.166 23 C -0.108 4.108 24 H 0.101 0.899 25 C -0.146 4.146 26 C -0.156 4.156 27 C -0.155 4.155 28 C -0.141 4.141 29 C -0.050 4.050 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.163 0.837 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.151 0.849 36 H 0.246 0.754 37 H 0.124 0.876 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.118 0.882 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.091 0.909 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 24.780 -1.256 -1.386 24.850 hybrid contribution -1.352 0.962 -0.239 1.676 sum 23.428 -0.294 -1.625 23.486 Atomic orbital electron populations 1.69921 1.05854 1.28200 1.45972 1.24789 0.94628 0.98922 0.92825 0.86826 0.81825 0.83554 0.80012 1.19032 1.19383 1.16150 1.22655 0.87283 0.98412 1.59520 0.87183 1.82591 1.11679 0.99376 1.86938 1.21951 0.94085 1.00107 1.03661 1.21427 0.99710 0.92286 1.01080 1.21019 0.96494 0.95254 1.00824 1.20840 0.92548 0.98769 1.04200 1.20983 0.99762 0.91057 1.00751 1.17172 0.85400 0.89417 1.05403 1.43366 1.09246 1.19073 1.58995 1.20492 0.82973 0.89110 0.77494 1.90664 1.81547 1.21393 1.45104 1.22223 0.90108 0.95372 1.02851 1.64628 1.06154 1.28449 1.21908 1.23327 0.95696 1.02777 0.86678 1.22302 0.95408 1.01129 0.97729 1.21774 0.95626 0.97197 0.96240 0.89876 1.21167 0.97886 0.97883 0.97698 1.21294 0.98042 1.00467 0.95815 1.21534 0.97592 0.98290 0.98116 1.21321 0.96837 0.99198 0.96737 1.22474 0.92355 0.93637 0.96530 0.93271 0.91466 0.83740 0.86727 0.86749 0.84927 0.75433 0.87551 0.91433 0.93926 0.88229 0.91659 0.90920 0.91617 0.91983 0.92040 0.92081 0.92217 0.91758 0.90911 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.47 13.97 55.48 0.78 -23.69 16 2 C 0.10 2.67 5.50 -17.46 -0.10 2.57 16 3 Si 0.85 19.49 27.74 -169.99 -4.71 14.77 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 6 H -0.24 -5.14 6.74 56.52 0.38 -4.76 16 7 C -0.53 -14.23 9.62 30.90 0.30 -13.93 16 8 H 0.11 3.09 5.06 -52.49 -0.27 2.83 16 9 S -0.06 -1.29 18.51 -107.50 -1.99 -3.28 16 10 C -0.08 -1.73 6.12 -38.76 -0.24 -1.97 16 11 C -0.12 -2.50 9.25 -39.36 -0.36 -2.87 16 12 C -0.12 -2.05 10.03 -39.58 -0.40 -2.45 16 13 C -0.14 -2.37 10.04 -39.53 -0.40 -2.77 16 14 C -0.10 -1.87 8.69 -39.42 -0.34 -2.21 16 15 C 0.13 2.41 6.32 -83.44 -0.53 1.88 16 16 N -0.66 -10.58 5.02 -9.70 -0.05 -10.63 16 17 C 0.51 7.68 7.29 -10.99 -0.08 7.60 16 18 O -0.51 -8.93 11.37 5.54 0.06 -8.87 16 19 C 0.03 0.30 5.43 -4.97 -0.03 0.27 16 20 N -0.49 -5.65 5.16 -224.44 -1.16 -6.81 16 21 C 0.04 0.51 5.15 -1.55 -0.01 0.51 16 22 C -0.13 -1.20 6.63 -25.71 -0.17 -1.37 16 23 C -0.09 -0.77 2.53 -90.03 -0.23 -0.99 16 24 H 0.08 0.76 8.06 -51.93 -0.42 0.35 16 25 C -0.11 -0.76 5.55 -27.71 -0.15 -0.91 16 26 C -0.12 -0.75 5.81 -27.30 -0.16 -0.91 16 27 C -0.12 -0.78 5.85 -26.56 -0.16 -0.93 16 28 C -0.10 -0.82 5.90 -27.04 -0.16 -0.98 16 29 C 0.06 0.55 1.64 -67.30 -0.11 0.44 16 30 H 0.05 0.48 7.74 -51.93 -0.40 0.08 16 31 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.15 3.26 4.95 -52.48 -0.26 3.00 16 33 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 34 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.13 2.35 6.19 -52.49 -0.32 2.02 16 36 H 0.41 5.92 7.97 -40.82 -0.33 5.60 16 37 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 0.72 7.90 -51.93 -0.41 0.31 16 39 H 0.04 0.56 7.65 -51.93 -0.40 0.16 16 40 H 0.10 1.41 6.84 -51.93 -0.36 1.06 16 41 H 0.06 0.58 8.07 -51.93 -0.42 0.16 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.45 8.04 -51.93 -0.42 0.03 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 0.62 8.06 -51.93 -0.42 0.20 16 50 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 396.14 15.07 5.97 5.97 Total: -1.00 -29.49 396.14 -12.22 -41.71 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -7.80 Total: 9.84 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -3.32 Total: -19.02 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: -0.43 Total: -41.13 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.06 Total: -8.87 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.71 Total: 14.77 kcal Atomic # 16 Polarization: -1.29 SS G_CDS: -1.99 Total: -3.28 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.49 -12.22 -41.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072596753.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.463 kcal (2) G-P(sol) polarization free energy of solvation -29.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds