Wall clock time and date at job start Tue Mar 31 2020 06:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31653 * 1 3 3 Si 1.86803 * 119.99820 * 2 1 4 4 H 1.48500 * 109.47195 * 269.99807 * 3 2 1 5 5 H 1.48497 * 109.47127 * 29.99884 * 3 2 1 6 6 H 1.48499 * 109.46960 * 149.99828 * 3 2 1 7 7 C 1.38682 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99668 * 0.02562 * 7 2 1 9 9 S 1.76195 * 120.00272 * 180.02562 * 7 2 1 10 10 C 1.76200 * 100.00279 * 174.90142 * 9 7 2 11 11 C 1.38989 * 120.12143 * 6.87299 * 10 9 7 12 12 C 1.38082 * 119.97981 * 180.02562 * 11 10 9 13 13 C 1.38403 * 120.22324 * 359.97438 * 12 11 10 14 14 C 1.38216 * 120.25303 * 359.72427 * 13 12 11 15 15 C 1.38687 * 120.01626 * 0.55569 * 14 13 12 16 16 N 1.39938 * 120.11223 * 179.72151 * 15 14 13 17 17 C 1.34772 * 120.00103 * 34.42176 * 16 15 14 18 18 O 1.21302 * 119.99967 * 355.96090 * 17 16 15 19 19 C 1.50699 * 119.99977 * 175.95776 * 17 16 15 20 20 N 1.46904 * 109.47103 * 180.02562 * 19 17 16 21 21 C 1.49090 * 111.00018 * 54.50737 * 20 19 17 22 22 C 1.54997 * 106.83764 * 145.35559 * 21 20 19 23 23 C 1.52943 * 103.96184 * 2.39649 * 22 21 20 24 24 H 1.09004 * 110.32635 * 89.48972 * 23 22 21 25 25 C 1.51753 * 116.58480 * 216.28182 * 23 22 21 26 26 C 1.52322 * 107.99941 * 177.10902 * 25 23 22 27 27 C 1.52567 * 111.60900 * 302.71520 * 26 25 23 28 28 C 1.53756 * 111.45001 * 54.43341 * 27 26 25 29 29 C 1.46655 * 111.00000 * 170.00120 * 20 19 17 30 30 H 1.08994 * 110.28958 * 313.99461 * 29 20 19 31 31 H 0.97004 * 119.99882 * 359.97438 * 1 2 3 32 32 H 1.08004 * 120.01591 * 0.02562 * 11 10 9 33 33 H 1.07998 * 119.89177 * 179.97438 * 12 11 10 34 34 H 1.08000 * 119.87113 * 179.97438 * 13 12 11 35 35 H 1.08001 * 119.99477 * 180.27387 * 14 13 12 36 36 H 0.96996 * 120.00061 * 214.41736 * 16 15 14 37 37 H 1.09002 * 109.47190 * 60.00223 * 19 17 16 38 38 H 1.08999 * 109.47278 * 299.99792 * 19 17 16 39 39 H 1.09000 * 109.98789 * 26.01175 * 21 20 19 40 40 H 1.09000 * 110.02183 * 264.71758 * 21 20 19 41 41 H 1.09000 * 110.53211 * 243.77532 * 22 21 20 42 42 H 1.08999 * 110.65221 * 121.07676 * 22 21 20 43 43 H 1.08996 * 109.90125 * 297.10870 * 25 23 22 44 44 H 1.09004 * 109.89938 * 58.15434 * 25 23 22 45 45 H 1.08999 * 109.26219 * 181.99412 * 26 25 23 46 46 H 1.09000 * 108.76324 * 63.10503 * 26 25 23 47 47 H 1.09003 * 109.08394 * 293.92658 * 27 26 25 48 48 H 1.09003 * 109.08761 * 174.93565 * 27 26 25 49 49 H 1.08999 * 109.89257 * 61.86600 * 28 27 26 50 50 H 1.08995 * 109.88955 * 182.89517 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2505 1.6178 0.0000 4 1 2.4980 2.0465 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5480 1.4402 0.7001 7 6 2.0100 -1.2010 0.0005 8 1 1.4699 -2.1363 0.0005 9 16 3.7719 -1.2010 0.0012 10 6 4.0779 -2.9294 0.1559 11 6 3.0236 -3.8328 0.0919 12 6 3.2667 -5.1866 0.2140 13 6 4.5580 -5.6486 0.3997 14 6 5.6142 -4.7589 0.4586 15 6 5.3811 -3.3967 0.3430 16 7 6.4482 -2.4938 0.4081 17 6 7.6509 -2.8345 -0.0957 18 8 7.8289 -3.9494 -0.5393 19 6 8.7746 -1.8304 -0.1080 20 7 9.9704 -2.4410 -0.7040 21 6 9.6699 -2.9974 -2.0541 22 6 10.9413 -2.7937 -2.9169 23 6 11.9457 -2.1634 -1.9509 24 1 12.5172 -2.9383 -1.4399 25 6 12.8792 -1.1162 -2.5295 26 6 13.7374 -0.5721 -1.3947 27 6 12.8824 0.0060 -0.2712 28 6 11.8540 -1.0181 0.2367 29 6 11.0075 -1.4338 -0.9504 30 1 10.5739 -0.5526 -1.4232 31 1 -0.4850 0.8401 0.0004 32 1 2.0146 -3.4762 -0.0533 33 1 2.4464 -5.8873 0.1645 34 1 4.7416 -6.7086 0.4950 35 1 6.6207 -5.1244 0.5992 36 1 6.3224 -1.6228 0.8159 37 1 8.9954 -1.5196 0.9131 38 1 8.4791 -0.9617 -0.6964 39 1 8.8291 -2.4644 -2.4980 40 1 9.4384 -4.0597 -1.9768 41 1 10.7353 -2.1192 -3.7480 42 1 11.3133 -3.7498 -3.2850 43 1 13.5132 -1.5660 -3.2936 44 1 12.2995 -0.3006 -2.9618 45 1 14.3924 0.2084 -1.7817 46 1 14.3477 -1.3829 -0.9969 47 1 12.3562 0.8863 -0.6406 48 1 13.5303 0.2999 0.5547 49 1 12.3679 -1.8869 0.6481 50 1 11.2244 -0.5633 1.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072596753.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:50 Heat of formation + Delta-G solvation = -26.930097 kcal Electronic energy + Delta-G solvation = -29759.262336 eV Core-core repulsion = 25876.055848 eV Total energy + Delta-G solvation = -3883.206488 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.161 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.81076 -40.86032 -39.25011 -36.71671 -35.75580 -34.78840 -33.71930 -31.96118 -31.41268 -30.27348 -29.33187 -28.04960 -27.22349 -24.00774 -23.66129 -23.57240 -22.08321 -21.95356 -21.05855 -20.80407 -20.20166 -18.37623 -18.07684 -17.66662 -17.19827 -16.88424 -16.51173 -16.18760 -15.88796 -15.60616 -15.55001 -15.31483 -15.03441 -14.91903 -14.81392 -14.41959 -14.21597 -14.11358 -13.73794 -13.71010 -13.27238 -13.19729 -13.10971 -12.98420 -12.82911 -12.72581 -12.38331 -12.37123 -12.14495 -12.04829 -11.61976 -11.57975 -11.37637 -11.33968 -11.31342 -11.27497 -10.84780 -10.77948 -10.67618 -10.53261 -9.48887 -9.28195 -8.59141 -8.55434 -6.32110 0.29942 0.46438 0.99713 1.28209 1.38155 1.54349 1.58818 1.95940 2.15711 2.50552 2.77590 2.88320 2.91209 3.47725 3.56166 3.81809 3.87865 4.02845 4.05660 4.21875 4.22704 4.24452 4.31092 4.33670 4.41344 4.45524 4.46159 4.55306 4.59130 4.62395 4.63552 4.72633 4.82775 4.94676 4.99366 5.02037 5.14044 5.16377 5.20020 5.30227 5.31205 5.33928 5.36962 5.40017 5.43065 5.56688 5.56748 5.64289 5.68260 5.79927 6.01041 6.09910 6.19953 6.41447 6.82655 7.09366 8.53755 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.011435 B = 0.002620 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.036550 B =10686.339210 C =12475.715671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.046 3.954 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.218 1.218 7 C -0.552 4.552 8 H 0.081 0.919 9 S -0.045 6.045 10 C -0.110 4.110 11 C -0.139 4.139 12 C -0.116 4.116 13 C -0.123 4.123 14 C -0.111 4.111 15 C 0.133 3.867 16 N -0.661 5.661 17 C 0.512 3.488 18 O -0.537 6.537 19 C 0.032 3.968 20 N -0.499 5.499 21 C 0.044 3.956 22 C -0.123 4.123 23 C -0.084 4.084 24 H 0.077 0.923 25 C -0.105 4.105 26 C -0.118 4.118 27 C -0.115 4.115 28 C -0.101 4.101 29 C 0.059 3.941 30 H 0.049 0.951 31 H 0.279 0.721 32 H 0.118 0.882 33 H 0.142 0.858 34 H 0.153 0.847 35 H 0.140 0.860 36 H 0.417 0.583 37 H 0.131 0.869 38 H 0.081 0.919 39 H 0.027 0.973 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.073 0.927 49 H 0.066 0.934 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.240 -0.914 -1.042 27.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.161 4.161 3 Si 0.732 3.268 4 H -0.186 1.186 5 H -0.184 1.184 6 H -0.141 1.141 7 C -0.698 4.698 8 H 0.098 0.902 9 S 0.204 5.796 10 C -0.226 4.226 11 C -0.164 4.164 12 C -0.136 4.136 13 C -0.145 4.145 14 C -0.133 4.133 15 C 0.032 3.968 16 N -0.307 5.307 17 C 0.301 3.699 18 O -0.413 6.413 19 C -0.099 4.099 20 N -0.223 5.223 21 C -0.084 4.084 22 C -0.161 4.161 23 C -0.103 4.103 24 H 0.095 0.905 25 C -0.143 4.143 26 C -0.155 4.155 27 C -0.153 4.153 28 C -0.139 4.139 29 C -0.050 4.050 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.136 0.864 33 H 0.160 0.840 34 H 0.170 0.830 35 H 0.157 0.843 36 H 0.254 0.746 37 H 0.149 0.851 38 H 0.098 0.902 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.092 0.908 49 H 0.085 0.915 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 28.102 -0.825 -1.090 28.135 hybrid contribution -2.328 0.557 -0.330 2.417 sum 25.774 -0.268 -1.421 25.814 Atomic orbital electron populations 1.70027 1.07629 1.29373 1.47701 1.25715 0.95450 1.02559 0.92331 0.85942 0.81401 0.79006 0.80414 1.18632 1.18415 1.14084 1.22897 0.90133 0.97675 1.59137 0.90158 1.82058 1.07838 1.01175 1.88543 1.22011 0.95299 0.99156 1.06122 1.21386 0.98580 0.94018 1.02429 1.21281 0.98066 0.94227 1.00049 1.21280 0.91488 1.00564 1.01127 1.21211 1.00485 0.90836 1.00764 1.17301 0.85244 0.90406 1.03887 1.43444 1.08984 1.19043 1.59240 1.21144 0.83072 0.89418 0.76257 1.90655 1.81914 1.22789 1.45965 1.22263 0.88788 0.94341 1.04532 1.64632 1.06531 1.29592 1.21511 1.23201 0.96536 1.00991 0.87624 1.22273 0.94420 1.01739 0.97695 1.21754 0.95467 0.97357 0.95739 0.90480 1.21152 0.97684 0.97297 0.98133 1.21294 0.97969 1.00819 0.95432 1.21522 0.97383 0.97797 0.98557 1.21325 0.96935 0.99379 0.96222 1.22550 0.91863 0.93078 0.97479 0.93274 0.91122 0.86450 0.84011 0.82963 0.84276 0.74562 0.85121 0.90167 0.95447 0.90815 0.90924 0.90478 0.90800 0.91997 0.90929 0.91995 0.92085 0.90795 0.91485 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.44 13.97 21.63 0.30 -53.14 16 2 C 0.05 2.53 5.50 84.83 0.47 3.00 16 3 Si 0.91 40.22 27.74 68.60 1.90 42.12 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 6 H -0.22 -8.82 6.74 99.48 0.67 -8.15 16 7 C -0.55 -30.68 9.62 67.93 0.65 -30.03 16 8 H 0.08 4.84 5.06 -2.91 -0.01 4.82 16 9 S -0.04 -2.05 18.51 -56.49 -1.05 -3.10 16 10 C -0.11 -4.71 6.12 22.80 0.14 -4.57 16 11 C -0.14 -5.96 9.25 22.41 0.21 -5.76 16 12 C -0.12 -4.00 10.03 22.27 0.22 -3.78 16 13 C -0.12 -3.84 10.04 22.30 0.22 -3.61 16 14 C -0.11 -3.83 8.69 22.37 0.19 -3.64 16 15 C 0.13 4.95 6.32 38.31 0.24 5.19 16 16 N -0.66 -20.43 5.02 -302.99 -1.52 -21.95 16 17 C 0.51 14.76 7.29 87.66 0.64 15.40 16 18 O -0.54 -18.35 11.37 -3.10 -0.04 -18.39 16 19 C 0.03 0.67 5.43 85.56 0.46 1.13 16 20 N -0.50 -10.86 5.16 -863.98 -4.46 -15.32 16 21 C 0.04 1.05 5.15 86.56 0.45 1.49 16 22 C -0.12 -2.18 6.63 31.26 0.21 -1.97 16 23 C -0.08 -1.29 2.53 -10.41 -0.03 -1.32 16 24 H 0.08 1.29 8.06 -2.38 -0.02 1.27 16 25 C -0.10 -1.21 5.55 29.96 0.17 -1.04 16 26 C -0.12 -1.16 5.81 30.23 0.18 -0.99 16 27 C -0.11 -1.21 5.85 30.71 0.18 -1.03 16 28 C -0.10 -1.37 5.90 30.39 0.18 -1.19 16 29 C 0.06 0.98 1.64 45.31 0.07 1.05 16 30 H 0.05 0.84 7.74 -2.39 -0.02 0.82 16 31 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 32 H 0.12 5.67 4.95 -2.91 -0.01 5.66 16 33 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 34 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 35 H 0.14 4.67 6.19 -2.91 -0.02 4.66 16 36 H 0.42 11.51 7.97 -92.71 -0.74 10.77 16 37 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.08 1.53 7.90 -2.39 -0.02 1.51 16 39 H 0.03 0.71 7.65 -2.39 -0.02 0.69 16 40 H 0.07 2.12 6.84 -2.39 -0.02 2.11 16 41 H 0.07 1.18 8.07 -2.39 -0.02 1.16 16 42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.06 0.74 8.04 -2.38 -0.02 0.72 16 45 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.07 1.00 8.06 -2.39 -0.02 0.98 16 50 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -66.11 396.14 0.17 -65.94 By element: Atomic # 1 Polarization: 35.33 SS G_CDS: 0.18 Total: 35.50 kcal Atomic # 6 Polarization: -36.52 SS G_CDS: 4.85 Total: -31.66 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -5.68 Total: -90.41 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.04 Total: -18.39 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 1.90 Total: 42.12 kcal Atomic # 16 Polarization: -2.05 SS G_CDS: -1.05 Total: -3.10 kcal Total: -66.11 0.17 -65.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072596753.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.008 kcal (2) G-P(sol) polarization free energy of solvation -66.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds