Wall clock time and date at job start Tue Mar 31 2020 06:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31648 * 1 3 3 Si 1.86803 * 119.99908 * 2 1 4 4 H 1.48497 * 109.46906 * 269.99755 * 3 2 1 5 5 H 1.48494 * 109.47099 * 30.00257 * 3 2 1 6 6 H 1.48500 * 109.46875 * 150.00001 * 3 2 1 7 7 C 1.38686 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00326 * 359.97438 * 7 2 1 9 9 S 1.76208 * 119.99549 * 180.27481 * 7 2 1 10 10 C 1.76204 * 99.99641 * 174.62280 * 9 7 2 11 11 C 1.38990 * 120.12589 * 6.87561 * 10 9 7 12 12 C 1.38088 * 119.97730 * 179.74338 * 11 10 9 13 13 C 1.38397 * 120.22778 * 0.53688 * 12 11 10 14 14 C 1.38220 * 120.24594 * 359.73929 * 13 12 11 15 15 C 1.38677 * 120.02443 * 359.97438 * 14 13 12 16 16 N 1.39936 * 120.11516 * 180.02562 * 15 14 13 17 17 C 1.34779 * 120.00079 * 34.41856 * 16 15 14 18 18 O 1.21295 * 119.99942 * 355.95992 * 17 16 15 19 19 C 1.50696 * 119.99973 * 175.96189 * 17 16 15 20 20 N 1.46897 * 109.47349 * 179.97438 * 19 17 16 21 21 C 1.48601 * 110.99649 * 69.87131 * 20 19 17 22 22 C 1.55530 * 102.82402 * 158.46966 * 21 20 19 23 23 C 1.54045 * 101.13076 * 319.97432 * 22 21 20 24 24 H 1.08999 * 104.97695 * 276.75233 * 23 22 21 25 25 C 1.49256 * 113.48755 * 161.77099 * 23 22 21 26 26 C 1.52545 * 113.37178 * 261.32123 * 25 23 22 27 27 C 1.53506 * 107.40684 * 305.96409 * 26 25 23 28 28 C 1.52223 * 107.88905 * 69.29441 * 27 26 25 29 29 C 1.49194 * 111.00178 * 187.81520 * 20 19 17 30 30 H 1.08996 * 108.95278 * 336.87465 * 29 20 19 31 31 H 0.96997 * 120.00389 * 359.97438 * 1 2 3 32 32 H 1.07999 * 120.01046 * 359.97438 * 11 10 9 33 33 H 1.07995 * 119.88353 * 180.27303 * 12 11 10 34 34 H 1.08000 * 119.87221 * 179.76280 * 13 12 11 35 35 H 1.08008 * 119.98324 * 180.02562 * 14 13 12 36 36 H 0.96998 * 119.99922 * 214.42494 * 16 15 14 37 37 H 1.08998 * 109.47511 * 300.00170 * 19 17 16 38 38 H 1.09001 * 109.47416 * 59.99784 * 19 17 16 39 39 H 1.08993 * 110.74703 * 276.80668 * 21 20 19 40 40 H 1.09006 * 110.73896 * 40.13734 * 21 20 19 41 41 H 1.08996 * 111.09026 * 77.94240 * 22 21 20 42 42 H 1.09008 * 111.08783 * 201.97280 * 22 21 20 43 43 H 1.09001 * 108.69550 * 22.32917 * 25 23 22 44 44 H 1.09003 * 108.70151 * 140.44345 * 25 23 22 45 45 H 1.09001 * 109.87033 * 65.44367 * 26 25 23 46 46 H 1.09004 * 109.86940 * 186.48622 * 26 25 23 47 47 H 1.09001 * 109.77681 * 188.89049 * 27 26 25 48 48 H 1.08991 * 109.77926 * 309.64216 * 27 26 25 49 49 H 1.08999 * 108.78619 * 62.39087 * 28 27 26 50 50 H 1.09001 * 108.78462 * 180.70973 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2505 1.6178 0.0000 4 1 2.4980 2.0464 -1.4001 5 1 1.4480 2.6526 0.7001 6 1 3.5480 1.4402 0.7000 7 6 2.0099 -1.2011 -0.0005 8 1 1.4699 -2.1364 -0.0005 9 16 3.7719 -1.2010 0.0068 10 6 4.0772 -2.9291 0.1658 11 6 3.0232 -3.8327 0.0993 12 6 3.2666 -5.1867 0.2190 13 6 4.5564 -5.6480 0.4162 14 6 5.6108 -4.7573 0.4894 15 6 5.3790 -3.3957 0.3647 16 7 6.4451 -2.4923 0.4380 17 6 7.6537 -2.8351 -0.0501 18 8 7.8370 -3.9520 -0.4863 19 6 8.7772 -1.8309 -0.0541 20 7 9.9804 -2.4443 -0.6319 21 6 9.8135 -2.6724 -2.0908 22 6 11.2816 -2.7676 -2.5954 23 6 11.9546 -1.6596 -1.7633 24 1 11.7557 -0.7373 -2.3091 25 6 13.4409 -1.7813 -1.7022 26 6 13.9418 -2.4423 -0.4219 27 6 13.3469 -1.6639 0.7599 28 6 11.8491 -1.9337 0.7909 29 6 11.1628 -1.5470 -0.4819 30 1 10.8157 -0.5201 -0.3674 31 1 -0.4850 0.8400 0.0004 32 1 2.0147 -3.4762 -0.0496 33 1 2.4471 -5.8877 0.1627 34 1 4.7397 -6.7079 0.5129 35 1 6.6158 -5.1220 0.6431 36 1 6.3143 -1.6194 0.8402 37 1 8.4886 -0.9650 -0.6498 38 1 8.9860 -1.5152 0.9681 39 1 9.2800 -3.6043 -2.2774 40 1 9.2990 -1.8318 -2.5565 41 1 11.7114 -3.7435 -2.3697 42 1 11.3446 -2.5511 -3.6619 43 1 13.7787 -2.3702 -2.5550 44 1 13.8764 -0.7845 -1.7722 45 1 13.6103 -3.4800 -0.3865 46 1 15.0303 -2.3988 -0.3839 47 1 13.8019 -2.0021 1.6908 48 1 13.5276 -0.5973 0.6274 49 1 11.6876 -2.9983 0.9598 50 1 11.4092 -1.3770 1.6184 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072596755.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:57 Heat of formation + Delta-G solvation = -5.887013 kcal Electronic energy + Delta-G solvation = -29740.022750 eV Core-core repulsion = 25857.728758 eV Total energy + Delta-G solvation = -3882.293992 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.161 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.72303 -39.79687 -37.83657 -35.83479 -34.37988 -33.21997 -32.75080 -30.63921 -30.38202 -29.17778 -28.70956 -26.15515 -25.94296 -22.91568 -22.56050 -22.25802 -22.19180 -21.28417 -20.04043 -18.65006 -18.43947 -17.16824 -16.77155 -16.34413 -16.03719 -15.60993 -15.50095 -15.21458 -14.72897 -14.66978 -14.40223 -14.10277 -13.98086 -13.68285 -13.49049 -13.37471 -12.99509 -12.78384 -12.62416 -12.42530 -12.38887 -11.97375 -11.92872 -11.69084 -11.56707 -11.41235 -11.34174 -11.28628 -11.14217 -10.98888 -10.67082 -10.61145 -10.31811 -10.27651 -10.03457 -9.77085 -9.57106 -9.37935 -8.95238 -8.82231 -8.58323 -7.79007 -6.81531 -6.53071 -4.29226 1.78325 2.01348 2.73240 2.82092 3.08646 3.10640 3.18877 3.36102 3.83867 4.04017 4.23241 4.33262 4.34681 4.38557 4.45685 4.77323 4.81347 4.87433 4.87689 4.92355 4.98069 5.08738 5.11882 5.14810 5.23792 5.28591 5.44649 5.57969 5.58866 5.60247 5.61761 5.62285 5.72619 5.82984 5.85274 5.87500 5.93619 5.98684 6.04838 6.10130 6.10645 6.16342 6.22330 6.51900 6.70035 6.73402 6.82331 6.85024 7.06592 7.16026 7.58199 7.69458 7.71242 8.29418 8.37216 8.88287 10.54308 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.002504 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.894091 B =11177.954863 C =12636.588482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.099 3.901 3 Si 0.854 3.146 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.238 1.238 7 C -0.532 4.532 8 H 0.111 0.889 9 S -0.058 6.058 10 C -0.082 4.082 11 C -0.120 4.120 12 C -0.116 4.116 13 C -0.140 4.140 14 C -0.105 4.105 15 C 0.129 3.871 16 N -0.663 5.663 17 C 0.514 3.486 18 O -0.509 6.509 19 C 0.026 3.974 20 N -0.495 5.495 21 C 0.032 3.968 22 C -0.117 4.117 23 C -0.088 4.088 24 H 0.054 0.946 25 C -0.101 4.101 26 C -0.118 4.118 27 C -0.116 4.116 28 C -0.110 4.110 29 C 0.084 3.916 30 H 0.047 0.953 31 H 0.275 0.725 32 H 0.145 0.855 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.133 0.867 36 H 0.409 0.591 37 H 0.068 0.932 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.067 0.933 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.060 0.940 49 H 0.078 0.922 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.526 -2.301 -0.364 24.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.112 4.112 3 Si 0.678 3.322 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.162 1.162 7 C -0.678 4.678 8 H 0.128 0.872 9 S 0.193 5.807 10 C -0.199 4.199 11 C -0.145 4.145 12 C -0.137 4.137 13 C -0.163 4.163 14 C -0.126 4.126 15 C 0.027 3.973 16 N -0.309 5.309 17 C 0.301 3.699 18 O -0.383 6.383 19 C -0.105 4.105 20 N -0.219 5.219 21 C -0.095 4.095 22 C -0.155 4.155 23 C -0.107 4.107 24 H 0.073 0.927 25 C -0.139 4.139 26 C -0.156 4.156 27 C -0.154 4.154 28 C -0.148 4.148 29 C -0.024 4.024 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.162 0.838 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.151 0.849 36 H 0.245 0.755 37 H 0.086 0.914 38 H 0.122 0.878 39 H 0.116 0.884 40 H 0.060 0.940 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.078 0.922 49 H 0.096 0.904 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 25.245 -2.242 -0.529 25.350 hybrid contribution -1.267 1.176 -0.147 1.735 sum 23.978 -1.065 -0.676 24.012 Atomic orbital electron populations 1.69916 1.05852 1.28193 1.45999 1.24791 0.94628 0.98919 0.92840 0.86823 0.81818 0.83554 0.80000 1.19041 1.19408 1.16154 1.22659 0.87290 0.98403 1.59490 0.87186 1.82592 1.11668 0.99434 1.86967 1.21952 0.94117 1.00094 1.03691 1.21426 0.99696 0.92282 1.01087 1.21014 0.96494 0.95251 1.00894 1.20838 0.92585 0.98755 1.04142 1.20986 0.99759 0.91077 1.00792 1.17169 0.85471 0.89438 1.05179 1.43384 1.08921 1.18859 1.59722 1.20459 0.82850 0.89118 0.77515 1.90662 1.81644 1.21147 1.44851 1.22166 0.90541 0.95216 1.02600 1.65044 1.01448 1.41377 1.14055 1.23435 0.96872 1.02258 0.86975 1.22657 0.94837 0.99339 0.98622 1.20375 0.95232 0.99699 0.95399 0.92739 1.20585 0.93869 1.00883 0.98561 1.21544 0.99542 0.99902 0.94587 1.21461 0.95458 1.00087 0.98400 1.20788 0.94734 1.03359 0.95872 1.21213 0.91301 0.94767 0.95123 0.93520 0.91475 0.83754 0.86743 0.86762 0.84933 0.75503 0.91403 0.87796 0.88417 0.93955 0.90493 0.90958 0.91785 0.92360 0.91433 0.92018 0.91808 0.92170 0.90384 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.49 13.97 55.48 0.78 -23.72 16 2 C 0.10 2.67 5.50 -17.46 -0.10 2.57 16 3 Si 0.85 19.52 27.74 -169.99 -4.72 14.80 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.24 -5.15 6.73 56.52 0.38 -4.77 16 7 C -0.53 -14.24 9.62 30.90 0.30 -13.95 16 8 H 0.11 3.10 5.06 -52.49 -0.27 2.83 16 9 S -0.06 -1.31 18.50 -107.50 -1.99 -3.30 16 10 C -0.08 -1.75 6.12 -38.75 -0.24 -1.98 16 11 C -0.12 -2.51 9.26 -39.36 -0.36 -2.88 16 12 C -0.12 -2.07 10.03 -39.58 -0.40 -2.47 16 13 C -0.14 -2.38 10.04 -39.53 -0.40 -2.78 16 14 C -0.10 -1.89 8.69 -39.43 -0.34 -2.24 16 15 C 0.13 2.45 6.32 -83.45 -0.53 1.92 16 16 N -0.66 -10.66 5.02 -9.70 -0.05 -10.71 16 17 C 0.51 7.75 7.48 -10.99 -0.08 7.67 16 18 O -0.51 -9.04 12.28 5.54 0.07 -8.97 16 19 C 0.03 0.30 5.13 -4.98 -0.03 0.28 16 20 N -0.49 -5.63 4.28 -226.23 -0.97 -6.60 16 21 C 0.03 0.37 5.88 -1.54 -0.01 0.36 16 22 C -0.12 -1.06 6.43 -24.84 -0.16 -1.22 16 23 C -0.09 -0.73 2.48 -92.90 -0.23 -0.96 16 24 H 0.05 0.45 8.03 -51.93 -0.42 0.03 16 25 C -0.10 -0.70 5.40 -28.81 -0.16 -0.85 16 26 C -0.12 -0.81 6.08 -26.70 -0.16 -0.97 16 27 C -0.12 -0.81 5.98 -26.87 -0.16 -0.97 16 28 C -0.11 -0.93 5.33 -28.77 -0.15 -1.08 16 29 C 0.08 0.77 2.63 -69.06 -0.18 0.59 16 30 H 0.05 0.42 7.69 -51.93 -0.40 0.02 16 31 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.15 3.26 4.95 -52.49 -0.26 3.00 16 33 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.13 2.37 6.19 -52.48 -0.32 2.05 16 36 H 0.41 5.94 7.96 -40.82 -0.33 5.61 16 37 H 0.07 0.71 7.89 -51.93 -0.41 0.30 16 38 H 0.10 0.98 8.11 -51.93 -0.42 0.56 16 39 H 0.10 1.35 6.97 -51.93 -0.36 0.98 16 40 H 0.04 0.48 7.84 -51.93 -0.41 0.07 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 43 H 0.06 0.41 7.81 -51.93 -0.41 0.01 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 49 H 0.08 0.79 7.89 -51.93 -0.41 0.38 16 50 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 396.96 15.07 5.98 5.98 Total: -1.00 -29.75 396.96 -12.07 -41.82 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -7.79 Total: 9.64 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -3.38 Total: -18.95 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: -0.24 Total: -41.02 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.07 Total: -8.97 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.72 Total: 14.80 kcal Atomic # 16 Polarization: -1.31 SS G_CDS: -1.99 Total: -3.30 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.75 -12.07 -41.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072596755.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.930 kcal (2) G-P(sol) polarization free energy of solvation -29.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds