Wall clock time and date at job start Tue Mar 31 2020 06:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31648 * 1 3 3 Si 1.86803 * 119.99908 * 2 1 4 4 H 1.48497 * 109.46906 * 269.99755 * 3 2 1 5 5 H 1.48494 * 109.47099 * 30.00257 * 3 2 1 6 6 H 1.48500 * 109.46875 * 150.00001 * 3 2 1 7 7 C 1.38686 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00326 * 359.97438 * 7 2 1 9 9 S 1.76208 * 119.99549 * 180.27481 * 7 2 1 10 10 C 1.76204 * 99.99641 * 174.62280 * 9 7 2 11 11 C 1.38990 * 120.12589 * 6.87561 * 10 9 7 12 12 C 1.38088 * 119.97730 * 179.74338 * 11 10 9 13 13 C 1.38397 * 120.22778 * 0.53688 * 12 11 10 14 14 C 1.38220 * 120.24594 * 359.73929 * 13 12 11 15 15 C 1.38677 * 120.02443 * 359.97438 * 14 13 12 16 16 N 1.39936 * 120.11516 * 180.02562 * 15 14 13 17 17 C 1.34779 * 120.00079 * 34.41856 * 16 15 14 18 18 O 1.21295 * 119.99942 * 355.95992 * 17 16 15 19 19 C 1.50696 * 119.99973 * 175.96189 * 17 16 15 20 20 N 1.46897 * 109.47349 * 179.97438 * 19 17 16 21 21 C 1.48601 * 110.99649 * 69.87131 * 20 19 17 22 22 C 1.55530 * 102.82402 * 158.46966 * 21 20 19 23 23 C 1.54045 * 101.13076 * 319.97432 * 22 21 20 24 24 H 1.08999 * 104.97695 * 276.75233 * 23 22 21 25 25 C 1.49256 * 113.48755 * 161.77099 * 23 22 21 26 26 C 1.52545 * 113.37178 * 261.32123 * 25 23 22 27 27 C 1.53506 * 107.40684 * 305.96409 * 26 25 23 28 28 C 1.52223 * 107.88905 * 69.29441 * 27 26 25 29 29 C 1.49194 * 111.00178 * 187.81520 * 20 19 17 30 30 H 1.08996 * 108.95278 * 336.87465 * 29 20 19 31 31 H 0.96997 * 120.00389 * 359.97438 * 1 2 3 32 32 H 1.07999 * 120.01046 * 359.97438 * 11 10 9 33 33 H 1.07995 * 119.88353 * 180.27303 * 12 11 10 34 34 H 1.08000 * 119.87221 * 179.76280 * 13 12 11 35 35 H 1.08008 * 119.98324 * 180.02562 * 14 13 12 36 36 H 0.96998 * 119.99922 * 214.42494 * 16 15 14 37 37 H 1.08998 * 109.47511 * 300.00170 * 19 17 16 38 38 H 1.09001 * 109.47416 * 59.99784 * 19 17 16 39 39 H 1.08993 * 110.74703 * 276.80668 * 21 20 19 40 40 H 1.09006 * 110.73896 * 40.13734 * 21 20 19 41 41 H 1.08996 * 111.09026 * 77.94240 * 22 21 20 42 42 H 1.09008 * 111.08783 * 201.97280 * 22 21 20 43 43 H 1.09001 * 108.69550 * 22.32917 * 25 23 22 44 44 H 1.09003 * 108.70151 * 140.44345 * 25 23 22 45 45 H 1.09001 * 109.87033 * 65.44367 * 26 25 23 46 46 H 1.09004 * 109.86940 * 186.48622 * 26 25 23 47 47 H 1.09001 * 109.77681 * 188.89049 * 27 26 25 48 48 H 1.08991 * 109.77926 * 309.64216 * 27 26 25 49 49 H 1.08999 * 108.78619 * 62.39087 * 28 27 26 50 50 H 1.09001 * 108.78462 * 180.70973 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2505 1.6178 0.0000 4 1 2.4980 2.0464 -1.4001 5 1 1.4480 2.6526 0.7001 6 1 3.5480 1.4402 0.7000 7 6 2.0099 -1.2011 -0.0005 8 1 1.4699 -2.1364 -0.0005 9 16 3.7719 -1.2010 0.0068 10 6 4.0772 -2.9291 0.1658 11 6 3.0232 -3.8327 0.0993 12 6 3.2666 -5.1867 0.2190 13 6 4.5564 -5.6480 0.4162 14 6 5.6108 -4.7573 0.4894 15 6 5.3790 -3.3957 0.3647 16 7 6.4451 -2.4923 0.4380 17 6 7.6537 -2.8351 -0.0501 18 8 7.8370 -3.9520 -0.4863 19 6 8.7772 -1.8309 -0.0541 20 7 9.9804 -2.4443 -0.6319 21 6 9.8135 -2.6724 -2.0908 22 6 11.2816 -2.7676 -2.5954 23 6 11.9546 -1.6596 -1.7633 24 1 11.7557 -0.7373 -2.3091 25 6 13.4409 -1.7813 -1.7022 26 6 13.9418 -2.4423 -0.4219 27 6 13.3469 -1.6639 0.7599 28 6 11.8491 -1.9337 0.7909 29 6 11.1628 -1.5470 -0.4819 30 1 10.8157 -0.5201 -0.3674 31 1 -0.4850 0.8400 0.0004 32 1 2.0147 -3.4762 -0.0496 33 1 2.4471 -5.8877 0.1627 34 1 4.7397 -6.7079 0.5129 35 1 6.6158 -5.1220 0.6431 36 1 6.3143 -1.6194 0.8402 37 1 8.4886 -0.9650 -0.6498 38 1 8.9860 -1.5152 0.9681 39 1 9.2800 -3.6043 -2.2774 40 1 9.2990 -1.8318 -2.5565 41 1 11.7114 -3.7435 -2.3697 42 1 11.3446 -2.5511 -3.6619 43 1 13.7787 -2.3702 -2.5550 44 1 13.8764 -0.7845 -1.7722 45 1 13.6103 -3.4800 -0.3865 46 1 15.0303 -2.3988 -0.3839 47 1 13.8019 -2.0021 1.6908 48 1 13.5276 -0.5973 0.6274 49 1 11.6876 -2.9983 0.9598 50 1 11.4092 -1.3770 1.6184 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072596755.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:56 Heat of formation + Delta-G solvation = -22.193448 kcal Electronic energy + Delta-G solvation = -29740.729850 eV Core-core repulsion = 25857.728758 eV Total energy + Delta-G solvation = -3883.001092 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.161 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.71618 -40.86485 -39.21334 -36.58829 -35.73669 -34.78521 -33.93934 -31.95985 -31.51691 -30.27873 -29.52377 -28.04425 -27.03816 -23.99918 -23.60062 -23.51162 -22.88140 -22.25771 -21.28068 -20.22352 -19.31784 -18.44332 -18.06288 -17.69722 -17.23080 -17.04551 -16.65876 -16.37425 -15.74231 -15.67285 -15.37782 -15.31249 -15.11993 -14.97831 -14.63054 -14.35705 -14.32857 -14.06507 -13.70844 -13.66307 -13.35433 -13.13192 -13.10510 -12.98070 -12.82046 -12.65241 -12.41220 -12.32781 -12.30262 -12.11507 -11.67937 -11.60695 -11.37315 -11.31450 -11.20515 -10.94007 -10.90287 -10.84058 -10.68729 -10.53214 -9.44331 -9.27641 -8.58671 -8.54860 -6.31716 0.30941 0.46976 1.00101 1.28420 1.38321 1.56568 1.60567 1.95668 2.15923 2.50754 2.78004 2.90638 2.95575 3.54505 3.58185 3.69799 3.83825 4.03213 4.14904 4.16015 4.23416 4.24123 4.29922 4.32007 4.40361 4.46239 4.47680 4.51714 4.62472 4.64245 4.66502 4.82303 4.90499 4.97660 5.00212 5.03723 5.09546 5.16148 5.21611 5.26692 5.32059 5.37825 5.38457 5.43391 5.52177 5.57529 5.58317 5.64670 5.68680 5.88284 5.98236 6.10309 6.20352 6.44436 6.82914 7.13390 8.54068 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.002504 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.894091 B =11177.954863 C =12636.588482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.045 3.955 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.218 1.218 7 C -0.552 4.552 8 H 0.081 0.919 9 S -0.045 6.045 10 C -0.111 4.111 11 C -0.139 4.139 12 C -0.117 4.117 13 C -0.123 4.123 14 C -0.112 4.112 15 C 0.134 3.866 16 N -0.662 5.662 17 C 0.514 3.486 18 O -0.537 6.537 19 C 0.033 3.967 20 N -0.510 5.510 21 C 0.030 3.970 22 C -0.111 4.111 23 C -0.086 4.086 24 H 0.059 0.941 25 C -0.100 4.100 26 C -0.118 4.118 27 C -0.113 4.113 28 C -0.107 4.107 29 C 0.084 3.916 30 H 0.055 0.945 31 H 0.279 0.721 32 H 0.118 0.882 33 H 0.142 0.858 34 H 0.152 0.848 35 H 0.139 0.861 36 H 0.416 0.584 37 H 0.082 0.918 38 H 0.128 0.872 39 H 0.068 0.932 40 H 0.042 0.958 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.054 0.946 46 H 0.074 0.926 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.057 0.943 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.843 -1.709 -0.034 27.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.161 4.161 3 Si 0.733 3.267 4 H -0.186 1.186 5 H -0.185 1.185 6 H -0.141 1.141 7 C -0.698 4.698 8 H 0.098 0.902 9 S 0.204 5.796 10 C -0.226 4.226 11 C -0.164 4.164 12 C -0.137 4.137 13 C -0.145 4.145 14 C -0.134 4.134 15 C 0.033 3.967 16 N -0.309 5.309 17 C 0.303 3.697 18 O -0.413 6.413 19 C -0.099 4.099 20 N -0.234 5.234 21 C -0.097 4.097 22 C -0.149 4.149 23 C -0.105 4.105 24 H 0.078 0.922 25 C -0.138 4.138 26 C -0.155 4.155 27 C -0.151 4.151 28 C -0.145 4.145 29 C -0.023 4.023 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.136 0.864 33 H 0.160 0.840 34 H 0.170 0.830 35 H 0.156 0.844 36 H 0.254 0.746 37 H 0.100 0.900 38 H 0.146 0.854 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.073 0.927 46 H 0.093 0.907 47 H 0.087 0.913 48 H 0.087 0.913 49 H 0.076 0.924 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 28.598 -1.681 -0.188 28.648 hybrid contribution -2.256 0.731 -0.248 2.384 sum 26.342 -0.950 -0.436 26.363 Atomic orbital electron populations 1.70022 1.07631 1.29372 1.47699 1.25721 0.95457 1.02573 0.92340 0.85935 0.81396 0.78975 0.80406 1.18634 1.18451 1.14063 1.22901 0.90149 0.97667 1.59130 0.90173 1.82052 1.07814 1.01178 1.88544 1.22015 0.95317 0.99176 1.06130 1.21386 0.98578 0.94005 1.02423 1.21276 0.98044 0.94238 1.00122 1.21276 0.91532 1.00537 1.01111 1.21208 1.00440 0.90891 1.00841 1.17300 0.85340 0.90422 1.03673 1.43468 1.08666 1.18821 1.59925 1.21164 0.82975 0.89429 0.76176 1.90647 1.82049 1.22682 1.45876 1.22190 0.89215 0.94131 1.04339 1.65022 1.02024 1.42553 1.13824 1.23350 0.98115 1.00716 0.87549 1.22627 0.93209 0.99484 0.99540 1.20393 0.96017 0.99357 0.94713 0.92234 1.20584 0.92787 1.01644 0.98761 1.21538 1.00323 0.99089 0.94554 1.21452 0.94232 1.00636 0.98772 1.20766 0.95942 1.02067 0.95703 1.21306 0.90505 0.94676 0.95834 0.92684 0.91130 0.86445 0.84022 0.83006 0.84363 0.74609 0.89981 0.85394 0.91372 0.94003 0.91196 0.89677 0.91327 0.91227 0.92743 0.90743 0.91260 0.91284 0.92381 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.46 13.97 21.63 0.30 -53.16 16 2 C 0.05 2.51 5.50 84.83 0.47 2.98 16 3 Si 0.91 40.23 27.74 68.60 1.90 42.13 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.22 -8.80 6.73 99.48 0.67 -8.13 16 7 C -0.55 -30.71 9.62 67.93 0.65 -30.06 16 8 H 0.08 4.83 5.06 -2.91 -0.01 4.82 16 9 S -0.04 -2.04 18.50 -56.49 -1.05 -3.08 16 10 C -0.11 -4.75 6.12 22.81 0.14 -4.61 16 11 C -0.14 -5.98 9.26 22.41 0.21 -5.77 16 12 C -0.12 -4.05 10.03 22.27 0.22 -3.83 16 13 C -0.12 -3.87 10.04 22.30 0.22 -3.65 16 14 C -0.11 -3.90 8.69 22.37 0.19 -3.70 16 15 C 0.13 5.02 6.32 38.31 0.24 5.26 16 16 N -0.66 -20.57 5.02 -303.00 -1.52 -22.09 16 17 C 0.51 14.89 7.48 87.66 0.66 15.55 16 18 O -0.54 -18.74 12.28 -3.08 -0.04 -18.78 16 19 C 0.03 0.68 5.13 85.56 0.44 1.12 16 20 N -0.51 -10.87 4.28 -869.65 -3.72 -14.60 16 21 C 0.03 0.68 5.88 86.85 0.51 1.19 16 22 C -0.11 -1.86 6.43 31.82 0.20 -1.66 16 23 C -0.09 -1.22 2.48 -12.27 -0.03 -1.25 16 24 H 0.06 0.81 8.03 -2.39 -0.02 0.79 16 25 C -0.10 -1.12 5.40 29.25 0.16 -0.96 16 26 C -0.12 -1.34 6.08 30.61 0.19 -1.15 16 27 C -0.11 -1.29 5.98 30.51 0.18 -1.11 16 28 C -0.11 -1.60 5.33 29.28 0.16 -1.44 16 29 C 0.08 1.35 2.63 42.77 0.11 1.47 16 30 H 0.06 0.81 7.69 -2.39 -0.02 0.80 16 31 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 32 H 0.12 5.69 4.95 -2.91 -0.01 5.67 16 33 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 34 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 35 H 0.14 4.72 6.19 -2.91 -0.02 4.70 16 36 H 0.42 11.52 7.96 -92.71 -0.74 10.79 16 37 H 0.08 1.51 7.89 -2.39 -0.02 1.50 16 38 H 0.13 2.05 8.11 -2.39 -0.02 2.03 16 39 H 0.07 1.91 6.97 -2.39 -0.02 1.90 16 40 H 0.04 0.91 7.84 -2.38 -0.02 0.90 16 41 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 43 H 0.07 0.72 7.81 -2.39 -0.02 0.70 16 44 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.05 0.76 8.10 -2.39 -0.02 0.75 16 46 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.07 0.70 8.09 -2.39 -0.02 0.68 16 49 H 0.06 1.11 7.89 -2.39 -0.02 1.09 16 50 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -66.83 396.96 0.98 -65.85 By element: Atomic # 1 Polarization: 35.18 SS G_CDS: 0.18 Total: 35.36 kcal Atomic # 6 Polarization: -36.56 SS G_CDS: 4.92 Total: -31.63 kcal Atomic # 7 Polarization: -84.90 SS G_CDS: -4.94 Total: -89.84 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.04 Total: -18.78 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 1.90 Total: 42.13 kcal Atomic # 16 Polarization: -2.04 SS G_CDS: -1.05 Total: -3.08 kcal Total: -66.83 0.98 -65.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072596755.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.655 kcal (2) G-P(sol) polarization free energy of solvation -66.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds