Wall clock time and date at job start Tue Mar 31 2020 05:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00133 * 2 1 4 4 H 1.48499 * 109.47146 * 270.00185 * 3 2 1 5 5 H 1.48495 * 109.46802 * 30.00009 * 3 2 1 6 6 H 1.48503 * 109.47065 * 150.00131 * 3 2 1 7 7 C 1.38817 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99910 * 196.26664 * 7 2 1 9 9 N 1.36935 * 119.99942 * 16.27074 * 7 2 1 10 10 C 1.46969 * 120.59558 * 211.44783 * 9 7 2 11 11 C 1.53369 * 108.63899 * 235.20572 * 10 9 7 12 12 N 1.46965 * 108.63325 * 310.57399 * 11 10 9 13 13 C 1.34771 * 120.59328 * 235.20056 * 12 11 10 14 14 O 1.21279 * 119.99688 * 185.29928 * 13 12 11 15 15 C 1.50699 * 120.00041 * 5.30540 * 13 12 11 16 16 H 1.09004 * 109.50568 * 44.79652 * 15 13 12 17 17 C 1.53092 * 109.50502 * 284.70579 * 15 13 12 18 18 N 1.47011 * 109.25786 * 183.21766 * 17 15 13 19 19 C 1.46906 * 111.00253 * 182.39317 * 18 17 15 20 20 C 1.50705 * 109.46749 * 302.41004 * 19 18 17 21 21 C 1.38227 * 119.99943 * 269.72280 * 20 19 18 22 22 C 1.38234 * 119.99969 * 179.78848 * 21 20 19 23 23 C 1.38236 * 120.00072 * 0.44741 * 22 21 20 24 24 C 1.38238 * 119.99842 * 359.80733 * 23 22 21 25 25 C 1.38229 * 119.99834 * 90.00145 * 20 19 18 26 26 C 1.47017 * 110.75378 * 58.61512 * 18 17 15 27 27 C 1.53096 * 109.25578 * 301.38415 * 26 18 17 28 28 O 1.43016 * 109.50527 * 164.87813 * 15 13 12 29 29 C 1.46974 * 118.81079 * 55.47968 * 12 11 10 30 30 C 1.46965 * 120.59528 * 31.42599 * 9 7 2 31 31 H 0.96995 * 119.99750 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.60837 * 115.45391 * 10 9 7 33 33 H 1.09002 * 109.60339 * 354.95408 * 10 9 7 34 34 H 1.08992 * 109.60989 * 190.82877 * 11 10 9 35 35 H 1.09006 * 109.60696 * 70.31800 * 11 10 9 36 36 H 1.08999 * 109.51062 * 63.27983 * 17 15 13 37 37 H 1.09005 * 109.51024 * 303.15211 * 17 15 13 38 38 H 1.08996 * 109.46995 * 62.41001 * 19 18 17 39 39 H 1.08999 * 109.47325 * 182.40800 * 19 18 17 40 40 H 1.07997 * 120.00413 * 0.02562 * 21 20 19 41 41 H 1.08007 * 120.00386 * 180.27146 * 22 21 20 42 42 H 1.07997 * 120.00372 * 179.83455 * 23 22 21 43 43 H 1.08002 * 120.00163 * 180.02562 * 24 23 22 44 44 H 1.08003 * 120.00373 * 359.97438 * 25 20 19 45 45 H 1.09002 * 109.50501 * 181.44535 * 26 18 17 46 46 H 1.09000 * 109.50497 * 61.32417 * 26 18 17 47 47 H 1.09009 * 109.50375 * 176.77984 * 27 26 18 48 48 H 1.08995 * 109.50923 * 296.86667 * 27 26 18 49 49 H 1.08997 * 109.61043 * 64.26534 * 29 12 11 50 50 H 1.08998 * 109.60461 * 184.77904 * 29 12 11 51 51 H 1.08998 * 109.61031 * 244.54095 * 30 9 7 52 52 H 1.08998 * 109.60730 * 5.05453 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0578 -1.2208 0.2625 9 7 1.3667 -2.3645 -0.3312 10 6 1.7709 -3.6420 0.2726 11 6 2.0935 -4.6349 -0.8509 12 7 0.9859 -4.6271 -1.8168 13 6 0.3525 -5.7711 -2.1433 14 8 -0.4945 -5.7687 -3.0113 15 6 0.6967 -7.0530 -1.4298 16 1 0.7634 -6.8664 -0.3579 17 6 2.0405 -7.5782 -1.9419 18 7 2.3341 -8.8673 -1.2991 19 6 3.6445 -9.3798 -1.7213 20 6 3.6707 -9.5165 -3.2219 21 6 3.2802 -10.7026 -3.8147 22 6 3.3000 -10.8266 -5.1913 23 6 3.7191 -9.7676 -5.9747 24 6 4.1146 -8.5832 -5.3816 25 6 4.0906 -8.4578 -4.0051 26 6 1.2712 -9.8435 -1.5800 27 6 -0.0648 -9.2956 -1.0714 28 8 -0.3189 -8.0277 -1.6824 29 6 0.5853 -3.3505 -2.4249 30 6 0.2590 -2.3567 -1.2971 31 1 -0.4849 0.8400 0.0004 32 1 0.9564 -4.0320 0.8830 33 1 2.6550 -3.4902 0.8919 34 1 2.2078 -5.6351 -0.4334 35 1 3.0157 -4.3362 -1.3494 36 1 2.8269 -6.8633 -1.6998 37 1 1.9906 -7.7132 -3.0224 38 1 4.4244 -8.6867 -1.4059 39 1 3.8180 -10.3541 -1.2645 40 1 2.9560 -11.5312 -3.2026 41 1 2.9908 -11.7519 -5.6548 42 1 3.7372 -9.8653 -7.0501 43 1 4.4417 -7.7556 -5.9937 44 1 4.3996 -7.5324 -3.5418 45 1 1.4962 -10.7822 -1.0736 46 1 1.2091 -10.0148 -2.6546 47 1 -0.8646 -9.9903 -1.3284 48 1 -0.0207 -9.1756 0.0110 49 1 1.4026 -2.9625 -3.0329 50 1 -0.2966 -3.5025 -3.0471 51 1 -0.6631 -2.6554 -0.7986 52 1 0.1448 -1.3564 -1.7146 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073099766.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:19 Heat of formation + Delta-G solvation = -23.624191 kcal Electronic energy + Delta-G solvation = -33625.202971 eV Core-core repulsion = 29397.105628 eV Total energy + Delta-G solvation = -4228.097342 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.200 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.81359 -40.67077 -39.54951 -38.38736 -36.85762 -35.71516 -33.33604 -32.90630 -32.42240 -31.89850 -31.45373 -29.23896 -28.57982 -26.43661 -25.40023 -25.16496 -24.36332 -23.37795 -22.72803 -22.07583 -21.21304 -20.35626 -18.96279 -18.02366 -17.84007 -17.64426 -17.29200 -16.79540 -16.58875 -16.48487 -16.25668 -15.79353 -15.73440 -15.63167 -15.51921 -15.32119 -15.22067 -15.02539 -14.69827 -14.37569 -14.12412 -13.91315 -13.75388 -13.41336 -13.39696 -13.17010 -12.90168 -12.66775 -12.65111 -12.47836 -12.41550 -12.26726 -12.23972 -12.03494 -11.90839 -11.88103 -11.75228 -11.64141 -10.78921 -10.74621 -10.60722 -9.88632 -9.83096 -9.73829 -9.47804 -8.63794 -7.88489 -5.40382 0.37329 0.46342 1.39702 1.49342 1.50914 1.59272 1.72509 2.50758 2.65341 2.86774 2.95056 3.27143 3.47528 3.58547 3.64085 3.81565 3.88218 3.90839 4.03875 4.11804 4.15986 4.20342 4.23963 4.24379 4.33448 4.36721 4.43214 4.46420 4.52986 4.58844 4.61887 4.70568 4.75482 4.77057 4.79052 4.84352 4.87997 4.97218 5.04757 5.10524 5.11231 5.21963 5.41664 5.51322 5.54924 5.57727 5.59544 5.66214 5.81438 5.90061 6.02453 6.08591 6.37106 6.40915 7.05905 7.10031 7.78237 8.33699 9.17116 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.014771 B = 0.002559 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.206028 B =10939.337935 C =11591.768652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.048 4.048 3 Si 0.969 3.031 4 H -0.286 1.286 5 H -0.299 1.299 6 H -0.263 1.263 7 C -0.263 4.263 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.126 3.874 11 C 0.094 3.906 12 N -0.594 5.594 13 C 0.513 3.487 14 O -0.578 6.578 15 C 0.088 3.912 16 H 0.103 0.897 17 C 0.036 3.964 18 N -0.517 5.517 19 C 0.094 3.906 20 C -0.132 4.132 21 C -0.114 4.114 22 C -0.131 4.131 23 C -0.131 4.131 24 C -0.138 4.138 25 C -0.122 4.122 26 C 0.014 3.986 27 C 0.054 3.946 28 O -0.391 6.391 29 C 0.103 3.897 30 C 0.174 3.826 31 H 0.250 0.750 32 H 0.015 0.985 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.037 0.963 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.134 0.866 43 H 0.127 0.873 44 H 0.124 0.876 45 H 0.119 0.881 46 H 0.039 0.961 47 H 0.117 0.883 48 H 0.073 0.927 49 H 0.071 0.929 50 H 0.071 0.929 51 H -0.007 1.007 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.572 -25.562 -4.664 28.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.244 4.244 3 Si 0.797 3.203 4 H -0.213 1.213 5 H -0.226 1.226 6 H -0.188 1.188 7 C -0.393 4.393 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.000 4.000 11 C -0.029 4.029 12 N -0.327 5.327 13 C 0.301 3.699 14 O -0.458 6.458 15 C 0.027 3.973 16 H 0.120 0.880 17 C -0.092 4.092 18 N -0.239 5.239 19 C -0.033 4.033 20 C -0.134 4.134 21 C -0.133 4.133 22 C -0.149 4.149 23 C -0.149 4.149 24 C -0.156 4.156 25 C -0.141 4.141 26 C -0.114 4.114 27 C -0.022 4.022 28 O -0.310 6.310 29 C -0.021 4.021 30 C 0.047 3.953 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.103 0.897 34 H 0.131 0.869 35 H 0.102 0.898 36 H 0.125 0.875 37 H 0.055 0.945 38 H 0.116 0.884 39 H 0.128 0.872 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.152 0.848 43 H 0.145 0.855 44 H 0.142 0.858 45 H 0.137 0.863 46 H 0.057 0.943 47 H 0.135 0.865 48 H 0.091 0.909 49 H 0.089 0.911 50 H 0.089 0.911 51 H 0.011 0.989 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.890 -25.310 -4.646 27.568 hybrid contribution -0.121 1.327 -0.974 1.650 sum 9.769 -23.983 -5.620 26.499 Atomic orbital electron populations 1.70181 1.06972 1.26059 1.54993 1.25943 0.95930 1.01879 1.00649 0.85248 0.78226 0.79323 0.77508 1.21286 1.22634 1.18753 1.19542 0.92789 0.85309 1.41656 0.90589 1.44202 1.38558 1.03601 1.46675 1.21494 0.98787 0.86020 0.93722 1.22578 0.88531 1.01506 0.90271 1.48038 1.34920 1.06314 1.43429 1.20694 0.81001 0.85419 0.82819 1.90641 1.34963 1.86419 1.33764 1.21863 0.88991 0.86683 0.99803 0.87957 1.22649 0.95564 0.93705 0.97332 1.62694 1.02965 1.02299 1.55981 1.21406 0.90636 1.03180 0.88054 1.20796 1.00085 0.94323 0.98168 1.21337 0.99219 0.97508 0.95207 1.21472 0.99670 0.99543 0.94251 1.21460 0.99008 0.93581 1.00896 1.21428 1.00375 0.98449 0.95361 1.21311 0.99707 0.98894 0.94196 1.22946 0.91335 0.96896 1.00227 1.23037 0.97566 0.83528 0.98079 1.88084 1.44746 1.22546 1.75617 1.22243 1.00250 0.83281 0.96303 1.20891 0.88707 0.96963 0.88728 0.94071 0.96704 0.89728 0.86871 0.89763 0.87513 0.94493 0.88445 0.87242 0.84265 0.84294 0.84826 0.85490 0.85814 0.86296 0.94297 0.86503 0.90922 0.91057 0.91054 0.98894 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.05 11.37 21.65 0.25 -54.80 16 2 C -0.05 -2.62 4.91 84.86 0.42 -2.20 16 3 Si 0.97 43.55 29.58 68.60 2.03 45.58 16 4 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 5 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 7 C -0.26 -13.69 9.55 84.03 0.80 -12.89 16 8 H 0.08 3.75 7.88 -2.91 -0.02 3.73 16 9 N -0.61 -29.16 2.95 -697.33 -2.06 -31.21 16 10 C 0.13 4.68 6.67 86.41 0.58 5.26 16 11 C 0.09 2.74 5.62 86.41 0.49 3.23 16 12 N -0.59 -21.20 2.94 -817.14 -2.40 -23.60 16 13 C 0.51 18.87 7.01 87.66 0.61 19.48 16 14 O -0.58 -26.38 16.00 15.53 0.25 -26.14 16 15 C 0.09 2.46 2.36 29.88 0.07 2.53 16 16 H 0.10 2.59 7.13 -2.39 -0.02 2.57 16 17 C 0.04 0.79 3.79 86.31 0.33 1.12 16 18 N -0.52 -8.43 4.94 -899.77 -4.44 -12.88 16 19 C 0.09 1.19 5.58 85.56 0.48 1.66 16 20 C -0.13 -2.12 4.01 -19.87 -0.08 -2.20 16 21 C -0.11 -1.68 8.05 22.27 0.18 -1.50 16 22 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 23 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 24 C -0.14 -2.59 10.05 22.27 0.22 -2.36 16 25 C -0.12 -2.26 7.93 22.27 0.18 -2.08 16 26 C 0.01 0.21 5.14 86.31 0.44 0.65 16 27 C 0.05 1.02 7.01 72.01 0.50 1.53 16 28 O -0.39 -11.80 10.05 -130.42 -1.31 -13.11 16 29 C 0.10 4.24 6.61 86.56 0.57 4.81 16 30 C 0.17 8.53 5.50 86.57 0.48 9.00 16 31 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 32 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.08 2.87 7.93 -2.39 -0.02 2.85 16 34 H 0.11 2.47 4.62 -2.39 -0.01 2.46 16 35 H 0.08 2.26 8.14 -2.38 -0.02 2.25 16 36 H 0.11 2.03 6.17 -2.39 -0.01 2.01 16 37 H 0.04 0.98 6.22 -2.38 -0.01 0.97 16 38 H 0.10 1.10 8.09 -2.39 -0.02 1.08 16 39 H 0.11 0.94 8.05 -2.39 -0.02 0.92 16 40 H 0.14 1.41 8.04 -2.91 -0.02 1.38 16 41 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.13 1.77 8.06 -2.91 -0.02 1.75 16 43 H 0.13 2.10 8.06 -2.91 -0.02 2.07 16 44 H 0.12 2.11 8.02 -2.91 -0.02 2.08 16 45 H 0.12 1.09 8.12 -2.39 -0.02 1.07 16 46 H 0.04 0.72 6.34 -2.39 -0.02 0.70 16 47 H 0.12 1.78 8.14 -2.38 -0.02 1.76 16 48 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 50 H 0.07 3.05 7.02 -2.39 -0.02 3.03 16 51 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 52 H 0.07 3.57 6.21 -2.39 -0.01 3.56 16 Total: -1.00 -73.92 400.20 -0.06 -73.99 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.91 Total: 19.94 kcal Atomic # 6 Polarization: 15.52 SS G_CDS: 6.71 Total: 22.23 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -8.66 Total: -122.50 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -1.06 Total: -39.25 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -73.92 -0.06 -73.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073099766.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.361 kcal (2) G-P(sol) polarization free energy of solvation -73.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds