Wall clock time and date at job start Tue Mar 31 2020 05:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38283 * 119.93695 * 2 1 4 4 C 1.38100 * 120.07755 * 179.69682 * 3 2 1 5 5 C 1.38888 * 119.95690 * 0.53432 * 4 3 2 6 6 N 1.39954 * 120.06214 * 179.74127 * 5 4 3 7 7 C 1.34776 * 119.99818 * 214.82250 * 6 5 4 8 8 O 1.21586 * 120.00351 * 355.39971 * 7 6 5 9 9 N 1.34780 * 119.99845 * 175.40986 * 7 6 5 10 10 C 1.46497 * 119.99934 * 359.97438 * 9 7 6 11 11 C 1.50698 * 109.47558 * 270.00420 * 10 9 7 12 12 H 1.08003 * 119.99842 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00318 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00110 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00040 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47044 * 60.00228 * 15 13 11 17 17 H 1.48496 * 109.46885 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47105 * 299.99984 * 15 13 11 19 19 C 1.46502 * 119.99787 * 179.97438 * 9 7 6 20 20 C 1.50702 * 109.47108 * 89.99871 * 19 9 7 21 21 C 1.38232 * 119.61766 * 95.01578 * 20 19 9 22 22 C 1.38630 * 119.15786 * 179.74696 * 21 20 19 23 23 C 1.38671 * 118.41916 * 0.47275 * 22 21 20 24 24 C 1.38179 * 119.16638 * 359.50978 * 23 22 21 25 25 N 1.31851 * 119.61541 * 274.99943 * 20 19 9 26 26 C 1.38824 * 119.87775 * 359.46965 * 5 4 3 27 27 C 1.38253 * 119.91419 * 0.27374 * 26 5 4 28 28 Cl 1.73596 * 119.97975 * 180.02562 * 27 26 5 29 29 H 1.09001 * 109.47165 * 270.02236 * 1 2 3 30 30 H 1.08995 * 109.46934 * 30.02376 * 1 2 3 31 31 H 1.08998 * 109.47076 * 150.02232 * 1 2 3 32 32 H 1.07998 * 119.95614 * 0.02562 * 3 2 1 33 33 H 1.08005 * 120.01750 * 180.27399 * 4 3 2 34 34 H 0.96990 * 119.99910 * 34.81220 * 6 5 4 35 35 H 1.09005 * 109.47132 * 30.00684 * 10 9 7 36 36 H 1.09004 * 109.46968 * 149.99902 * 10 9 7 37 37 H 0.97000 * 120.00423 * 180.02562 * 14 13 11 38 38 H 1.08992 * 109.47265 * 329.99525 * 19 9 7 39 39 H 1.09005 * 109.46848 * 209.99237 * 19 9 7 40 40 H 1.07997 * 120.41735 * 359.96128 * 21 20 19 41 41 H 1.08004 * 120.78481 * 180.23683 * 22 21 20 42 42 H 1.08003 * 120.41537 * 179.77818 * 23 22 21 43 43 H 1.07997 * 119.61571 * 180.24901 * 24 23 22 44 44 H 1.07999 * 120.04229 * 180.25390 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5781 1.2017 0.0063 5 6 4.2747 0.0001 0.0015 6 7 5.6742 0.0010 0.0024 7 6 6.3491 -0.9538 -0.6679 8 8 5.7451 -1.8631 -1.2033 9 7 7.6937 -0.9008 -0.7446 10 6 8.4215 0.1950 -0.0997 11 6 8.5728 1.3375 -1.0706 12 1 8.1670 1.2558 -2.0682 13 6 9.2292 2.4872 -0.6855 14 7 9.7229 2.5869 0.5293 15 14 9.4174 3.9031 -1.8894 16 1 8.0743 4.3797 -2.3069 17 1 10.1550 5.0138 -1.2356 18 1 10.1719 3.4417 -3.0823 19 6 8.4273 -1.9390 -1.4727 20 6 8.5807 -1.5282 -2.9145 21 6 9.7351 -0.8870 -3.3231 22 6 9.8683 -0.5181 -4.6528 23 6 8.8267 -0.8003 -5.5236 24 6 7.7028 -1.4445 -5.0427 25 7 7.6123 -1.7849 -3.7717 26 6 3.5801 -1.2019 0.0014 27 6 2.1975 -1.1992 0.0005 28 17 1.3272 -2.7013 0.0010 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6554 2.1326 0.0004 33 1 4.1161 2.1382 0.0108 34 1 6.1584 0.6888 0.4853 35 1 7.8676 0.5333 0.7760 36 1 9.4074 -0.1545 0.2067 37 1 10.1845 3.3959 0.8004 38 1 7.8770 -2.8782 -1.4190 39 1 9.4127 -2.0691 -1.0253 40 1 10.5246 -0.6792 -2.6162 41 1 10.7606 -0.0193 -5.0013 42 1 8.8948 -0.5240 -6.5654 43 1 6.8889 -1.6714 -5.7153 44 1 4.1190 -2.1378 0.0018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075105198.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:23 Heat of formation + Delta-G solvation = 32.544049 kcal Electronic energy + Delta-G solvation = -29523.438183 eV Core-core repulsion = 25466.819454 eV Total energy + Delta-G solvation = -4056.618729 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 359.114 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.34273 -39.64810 -38.58568 -36.35138 -35.35505 -34.50769 -32.83505 -32.03546 -31.68329 -30.74487 -30.53238 -27.73027 -26.74221 -25.33229 -23.21181 -22.95753 -22.76371 -21.97674 -21.10141 -19.37453 -17.92087 -17.03533 -16.67340 -16.36260 -15.74483 -15.54271 -15.36563 -15.19740 -14.94880 -14.62196 -14.29252 -14.00441 -13.96099 -13.43341 -13.28838 -13.12616 -12.81933 -12.70882 -12.42840 -12.34337 -12.22757 -11.86135 -11.72270 -11.54642 -11.44200 -11.31383 -11.12250 -11.04951 -10.85085 -10.66890 -10.31527 -9.91271 -9.71542 -9.44628 -9.33260 -8.96589 -8.70480 -8.57511 -8.52755 -7.95869 -7.57497 -6.28995 -4.36127 1.34945 1.49780 1.51820 1.74980 2.30295 3.15546 3.21045 3.21846 3.27645 3.62604 4.06570 4.22483 4.25173 4.67207 4.76113 4.91960 5.02282 5.04258 5.17706 5.20002 5.26537 5.44668 5.46280 5.55703 5.59001 5.62622 5.78174 5.82527 5.93229 5.99505 6.00946 6.15858 6.19726 6.34940 6.50528 6.53423 6.56262 6.60239 6.62661 6.74116 6.96297 7.12663 7.24184 7.30969 7.63859 7.66821 7.92612 8.45403 8.52397 8.74963 9.19757 9.33556 10.77103 Molecular weight = 359.11amu Principal moments of inertia in cm(-1) A = 0.009550 B = 0.003533 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.095467 B = 7923.523724 C = 9469.716399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.111 4.111 3 C -0.090 4.090 4 C -0.144 4.144 5 C 0.193 3.807 6 N -0.682 5.682 7 C 0.709 3.291 8 O -0.581 6.581 9 N -0.605 5.605 10 C 0.238 3.762 11 C -0.532 4.532 12 H 0.059 0.941 13 C 0.069 3.931 14 N -0.890 5.890 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.276 1.276 19 C 0.189 3.811 20 C 0.122 3.878 21 C -0.132 4.132 22 C -0.085 4.085 23 C -0.181 4.181 24 C 0.087 3.913 25 N -0.457 5.457 26 C -0.113 4.113 27 C -0.017 4.017 28 Cl -0.076 7.076 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.418 0.582 35 H 0.031 0.969 36 H 0.041 0.959 37 H 0.266 0.734 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.136 0.864 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.146 0.854 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.947 -4.437 -2.310 9.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.112 4.112 3 C -0.109 4.109 4 C -0.166 4.166 5 C 0.095 3.905 6 N -0.331 5.331 7 C 0.411 3.589 8 O -0.459 6.459 9 N -0.339 5.339 10 C 0.118 3.882 11 C -0.571 4.571 12 H 0.078 0.922 13 C -0.135 4.135 14 N -0.529 5.529 15 Si 0.719 3.281 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.201 1.201 19 C 0.064 3.936 20 C -0.017 4.017 21 C -0.153 4.153 22 C -0.111 4.111 23 C -0.201 4.201 24 C -0.071 4.071 25 N -0.167 5.167 26 C -0.135 4.135 27 C -0.044 4.044 28 Cl -0.047 7.047 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.258 0.742 35 H 0.049 0.951 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.154 0.846 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.164 0.836 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.961 -5.538 -2.257 10.773 hybrid contribution 1.353 1.973 -0.922 2.564 sum -7.608 -3.565 -3.179 8.983 Atomic orbital electron populations 1.20765 0.90767 1.02941 1.02311 1.19614 0.96378 0.91416 1.03836 1.20665 0.93192 0.96887 1.00138 1.21061 0.94347 0.97204 1.03942 1.17393 0.82696 0.92910 0.97474 1.42876 1.03671 1.32408 1.54097 1.15773 0.82273 0.81972 0.78889 1.90875 1.67440 1.35861 1.51687 1.47320 1.03742 1.28154 1.54664 1.19417 0.92532 0.83641 0.92595 1.21420 1.36923 0.99341 0.99434 0.92236 1.24887 0.95066 0.98322 0.95192 1.69896 1.37004 1.28424 1.17529 0.86647 0.78469 0.81719 0.81246 1.20224 1.21126 1.20120 1.20004 0.97025 0.91290 0.85309 1.21678 0.89271 0.94525 0.96261 1.21994 0.99492 0.97600 0.96181 1.21496 0.98634 0.97341 0.93648 1.22036 0.95684 1.01726 1.00668 1.22645 0.96625 0.95467 0.92326 1.67581 1.28615 1.17848 1.02614 1.21210 0.91616 0.99505 1.01136 1.20544 0.91904 0.86168 1.05768 1.98328 1.76570 1.32884 1.96959 0.91263 0.91563 0.91239 0.85176 0.85011 0.74173 0.95108 0.94072 0.92402 0.89103 0.89260 0.84597 0.85489 0.85684 0.83648 0.82987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.61 36.01 0.35 -0.80 16 2 C -0.11 -1.49 5.89 -104.55 -0.62 -2.10 16 3 C -0.09 -1.18 9.69 -39.62 -0.38 -1.56 16 4 C -0.14 -2.18 9.97 -39.39 -0.39 -2.57 16 5 C 0.19 3.38 6.30 -83.69 -0.53 2.85 16 6 N -0.68 -12.93 5.22 -14.23 -0.07 -13.01 16 7 C 0.71 14.81 8.12 -86.92 -0.71 14.11 16 8 O -0.58 -13.12 13.36 5.29 0.07 -13.05 16 9 N -0.61 -12.19 2.44 -182.18 -0.44 -12.63 16 10 C 0.24 5.17 5.01 -5.20 -0.03 5.15 16 11 C -0.53 -12.82 9.24 -34.44 -0.32 -13.14 16 12 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 13 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -22.90 13.29 55.43 0.74 -22.16 16 15 Si 0.89 19.88 29.54 -169.99 -5.02 14.86 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 C 0.19 3.41 5.76 -5.19 -0.03 3.38 16 20 C 0.12 2.28 6.36 -82.59 -0.53 1.75 16 21 C -0.13 -2.27 9.58 -39.44 -0.38 -2.65 16 22 C -0.09 -1.31 10.18 -39.28 -0.40 -1.71 16 23 C -0.18 -2.65 10.11 -39.44 -0.40 -3.05 16 24 C 0.09 1.43 11.18 -17.55 -0.20 1.24 16 25 N -0.46 -8.92 10.27 -9.47 -0.10 -9.01 16 26 C -0.11 -1.98 8.48 -39.36 -0.33 -2.31 16 27 C -0.02 -0.26 6.31 -39.52 -0.25 -0.50 16 28 Cl -0.08 -1.06 27.28 -51.86 -1.41 -2.47 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 31 H 0.07 0.72 6.89 -51.93 -0.36 0.37 16 32 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.13 1.86 8.06 -52.48 -0.42 1.43 16 34 H 0.42 7.81 6.52 -40.82 -0.27 7.54 16 35 H 0.03 0.69 6.30 -51.93 -0.33 0.36 16 36 H 0.04 0.92 7.89 -51.93 -0.41 0.51 16 37 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 38 H 0.09 1.66 7.42 -51.93 -0.39 1.27 16 39 H 0.09 1.38 7.79 -51.93 -0.40 0.98 16 40 H 0.14 2.24 8.06 -52.49 -0.42 1.81 16 41 H 0.13 1.64 8.06 -52.48 -0.42 1.21 16 42 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 43 H 0.15 2.01 8.06 -52.49 -0.42 1.59 16 44 H 0.15 2.91 6.22 -52.49 -0.33 2.59 16 LS Contribution 389.68 15.07 5.87 5.87 Total: -1.00 -29.09 389.68 -11.01 -40.09 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -5.40 Total: 11.84 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -5.23 Total: -0.33 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.12 Total: -56.82 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.07 Total: -13.05 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.41 Total: -2.47 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.09 -11.01 -40.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075105198.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.638 kcal (2) G-P(sol) polarization free energy of solvation -29.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds