Wall clock time and date at job start Tue Mar 31 2020 05:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38283 * 119.93695 * 2 1 4 4 C 1.38100 * 120.07755 * 179.69682 * 3 2 1 5 5 C 1.38888 * 119.95690 * 0.53432 * 4 3 2 6 6 N 1.39954 * 120.06214 * 179.74127 * 5 4 3 7 7 C 1.34776 * 119.99818 * 214.82250 * 6 5 4 8 8 O 1.21586 * 120.00351 * 355.39971 * 7 6 5 9 9 N 1.34780 * 119.99845 * 175.40986 * 7 6 5 10 10 C 1.46497 * 119.99934 * 359.97438 * 9 7 6 11 11 C 1.50698 * 109.47558 * 270.00420 * 10 9 7 12 12 H 1.08003 * 119.99842 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00318 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00110 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00040 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47044 * 60.00228 * 15 13 11 17 17 H 1.48496 * 109.46885 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47105 * 299.99984 * 15 13 11 19 19 C 1.46502 * 119.99787 * 179.97438 * 9 7 6 20 20 C 1.50702 * 109.47108 * 89.99871 * 19 9 7 21 21 C 1.38232 * 119.61766 * 95.01578 * 20 19 9 22 22 C 1.38630 * 119.15786 * 179.74696 * 21 20 19 23 23 C 1.38671 * 118.41916 * 0.47275 * 22 21 20 24 24 C 1.38179 * 119.16638 * 359.50978 * 23 22 21 25 25 N 1.31851 * 119.61541 * 274.99943 * 20 19 9 26 26 C 1.38824 * 119.87775 * 359.46965 * 5 4 3 27 27 C 1.38253 * 119.91419 * 0.27374 * 26 5 4 28 28 Cl 1.73596 * 119.97975 * 180.02562 * 27 26 5 29 29 H 1.09001 * 109.47165 * 270.02236 * 1 2 3 30 30 H 1.08995 * 109.46934 * 30.02376 * 1 2 3 31 31 H 1.08998 * 109.47076 * 150.02232 * 1 2 3 32 32 H 1.07998 * 119.95614 * 0.02562 * 3 2 1 33 33 H 1.08005 * 120.01750 * 180.27399 * 4 3 2 34 34 H 0.96990 * 119.99910 * 34.81220 * 6 5 4 35 35 H 1.09005 * 109.47132 * 30.00684 * 10 9 7 36 36 H 1.09004 * 109.46968 * 149.99902 * 10 9 7 37 37 H 0.97000 * 120.00423 * 180.02562 * 14 13 11 38 38 H 1.08992 * 109.47265 * 329.99525 * 19 9 7 39 39 H 1.09005 * 109.46848 * 209.99237 * 19 9 7 40 40 H 1.07997 * 120.41735 * 359.96128 * 21 20 19 41 41 H 1.08004 * 120.78481 * 180.23683 * 22 21 20 42 42 H 1.08003 * 120.41537 * 179.77818 * 23 22 21 43 43 H 1.07997 * 119.61571 * 180.24901 * 24 23 22 44 44 H 1.07999 * 120.04229 * 180.25390 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5781 1.2017 0.0063 5 6 4.2747 0.0001 0.0015 6 7 5.6742 0.0010 0.0024 7 6 6.3491 -0.9538 -0.6679 8 8 5.7451 -1.8631 -1.2033 9 7 7.6937 -0.9008 -0.7446 10 6 8.4215 0.1950 -0.0997 11 6 8.5728 1.3375 -1.0706 12 1 8.1670 1.2558 -2.0682 13 6 9.2292 2.4872 -0.6855 14 7 9.7229 2.5869 0.5293 15 14 9.4174 3.9031 -1.8894 16 1 8.0743 4.3797 -2.3069 17 1 10.1550 5.0138 -1.2356 18 1 10.1719 3.4417 -3.0823 19 6 8.4273 -1.9390 -1.4727 20 6 8.5807 -1.5282 -2.9145 21 6 9.7351 -0.8870 -3.3231 22 6 9.8683 -0.5181 -4.6528 23 6 8.8267 -0.8003 -5.5236 24 6 7.7028 -1.4445 -5.0427 25 7 7.6123 -1.7849 -3.7717 26 6 3.5801 -1.2019 0.0014 27 6 2.1975 -1.1992 0.0005 28 17 1.3272 -2.7013 0.0010 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6554 2.1326 0.0004 33 1 4.1161 2.1382 0.0108 34 1 6.1584 0.6888 0.4853 35 1 7.8676 0.5333 0.7760 36 1 9.4074 -0.1545 0.2067 37 1 10.1845 3.3959 0.8004 38 1 7.8770 -2.8782 -1.4190 39 1 9.4127 -2.0691 -1.0253 40 1 10.5246 -0.6792 -2.6162 41 1 10.7606 -0.0193 -5.0013 42 1 8.8948 -0.5240 -6.5654 43 1 6.8889 -1.6714 -5.7153 44 1 4.1190 -2.1378 0.0018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075105198.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:22 Heat of formation + Delta-G solvation = 18.708041 kcal Electronic energy + Delta-G solvation = -29524.038157 eV Core-core repulsion = 25466.819454 eV Total energy + Delta-G solvation = -4057.218703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 359.114 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.79460 -40.92628 -39.90374 -37.53842 -36.90524 -35.94724 -34.63796 -33.34821 -32.95733 -32.00249 -31.71506 -29.45451 -28.04089 -26.61065 -24.92851 -24.27683 -24.01398 -23.26747 -22.32402 -20.86174 -19.37219 -18.75032 -18.27160 -17.68310 -17.05902 -16.91824 -16.65996 -16.53740 -16.39264 -16.16686 -15.70876 -15.29861 -15.05095 -14.82326 -14.56423 -14.45895 -14.33194 -14.08472 -13.91181 -13.52166 -13.35316 -13.23172 -13.13821 -12.84302 -12.79018 -12.71228 -12.61123 -12.49579 -12.25693 -12.09046 -11.80761 -11.75303 -11.11475 -10.91977 -10.70051 -10.58985 -10.30796 -9.87712 -9.76223 -9.52569 -8.91726 -8.19056 -6.31045 0.15395 0.22576 0.31671 0.48662 1.13641 1.38384 1.42043 1.47639 1.77338 2.18305 2.39612 2.73488 2.88533 3.11881 3.18688 3.48736 3.86181 3.90866 3.97567 4.05389 4.15509 4.24250 4.31917 4.33475 4.45233 4.49486 4.61250 4.76965 4.79576 4.83408 4.86484 4.87198 4.93681 5.07976 5.15319 5.21314 5.28181 5.32666 5.35479 5.46355 5.54048 5.63044 5.77307 5.88763 5.98626 6.04666 6.08123 6.69233 6.98149 7.22057 7.39259 7.62349 8.85536 Molecular weight = 359.11amu Principal moments of inertia in cm(-1) A = 0.009550 B = 0.003533 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.095467 B = 7923.523724 C = 9469.716399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.103 4.103 3 C -0.080 4.080 4 C -0.146 4.146 5 C 0.162 3.838 6 N -0.681 5.681 7 C 0.703 3.297 8 O -0.603 6.603 9 N -0.605 5.605 10 C 0.252 3.748 11 C -0.525 4.525 12 H 0.040 0.960 13 C 0.034 3.966 14 N -0.914 5.914 15 Si 0.940 3.060 16 H -0.281 1.281 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.185 3.815 20 C 0.102 3.898 21 C -0.145 4.145 22 C -0.088 4.088 23 C -0.169 4.169 24 C 0.071 3.929 25 N -0.496 5.496 26 C -0.130 4.130 27 C -0.029 4.029 28 Cl -0.067 7.067 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.170 0.830 33 H 0.141 0.859 34 H 0.417 0.583 35 H 0.025 0.975 36 H 0.035 0.965 37 H 0.267 0.733 38 H 0.081 0.919 39 H 0.109 0.891 40 H 0.137 0.863 41 H 0.156 0.844 42 H 0.164 0.836 43 H 0.167 0.833 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.050 -2.718 -3.622 10.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.104 4.104 3 C -0.099 4.099 4 C -0.167 4.167 5 C 0.065 3.935 6 N -0.329 5.329 7 C 0.405 3.595 8 O -0.483 6.483 9 N -0.338 5.338 10 C 0.132 3.868 11 C -0.564 4.564 12 H 0.058 0.942 13 C -0.167 4.167 14 N -0.553 5.553 15 Si 0.767 3.233 16 H -0.207 1.207 17 H -0.207 1.207 18 H -0.197 1.197 19 C 0.061 3.939 20 C -0.037 4.037 21 C -0.165 4.165 22 C -0.114 4.114 23 C -0.189 4.189 24 C -0.086 4.086 25 N -0.206 5.206 26 C -0.152 4.152 27 C -0.056 4.056 28 Cl -0.038 7.038 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.187 0.813 33 H 0.159 0.841 34 H 0.256 0.744 35 H 0.043 0.957 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.128 0.872 40 H 0.155 0.845 41 H 0.174 0.826 42 H 0.182 0.818 43 H 0.184 0.816 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.076 -3.826 -3.566 11.353 hybrid contribution 1.592 1.399 -0.555 2.190 sum -8.485 -2.427 -4.121 9.740 Atomic orbital electron populations 1.20859 0.88088 1.04060 1.03669 1.20067 0.98263 0.90604 1.01499 1.21105 0.92320 0.98349 0.98108 1.21270 0.95443 0.96488 1.03457 1.17669 0.82015 0.94027 0.99744 1.42809 1.04498 1.31783 1.53836 1.15960 0.82435 0.82151 0.78986 1.90849 1.67830 1.36837 1.52803 1.47302 1.03618 1.28113 1.54781 1.19135 0.92125 0.83535 0.92039 1.21371 1.36302 1.00005 0.98687 0.94158 1.25393 0.94999 1.00000 0.96286 1.69965 1.37750 1.28960 1.18609 0.85882 0.78034 0.79608 0.79801 1.20716 1.20741 1.19668 1.20145 0.97571 0.90313 0.85858 1.21648 0.90039 0.95875 0.96129 1.22097 0.99073 0.97916 0.97439 1.21906 0.99888 0.96749 0.92896 1.22422 0.94295 0.99786 1.02382 1.23128 0.98153 0.95592 0.91731 1.67527 1.29586 1.19316 1.04154 1.21039 0.92704 0.98530 1.02895 1.20698 0.91319 0.87506 1.06056 1.98324 1.76056 1.32544 1.96922 0.89631 0.89189 0.91432 0.81297 0.84148 0.74356 0.95693 0.94707 0.92357 0.90031 0.87247 0.84513 0.82639 0.81805 0.81621 0.85656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.91 9.61 71.24 0.68 -1.23 16 2 C -0.10 -2.54 5.89 -19.82 -0.12 -2.65 16 3 C -0.08 -1.89 9.69 22.25 0.22 -1.67 16 4 C -0.15 -4.28 9.97 22.39 0.22 -4.05 16 5 C 0.16 5.82 6.30 38.14 0.24 6.06 16 6 N -0.68 -26.96 5.22 -317.19 -1.65 -28.61 16 7 C 0.70 30.81 8.12 179.05 1.45 32.26 16 8 O -0.60 -28.81 13.36 -3.99 -0.05 -28.87 16 9 N -0.60 -25.36 2.44 -848.56 -2.07 -27.43 16 10 C 0.25 11.26 5.01 85.63 0.43 11.69 16 11 C -0.52 -25.49 9.24 25.60 0.24 -25.26 16 12 H 0.04 2.11 7.81 -2.91 -0.02 2.09 16 13 C 0.03 1.68 5.46 84.65 0.46 2.14 16 14 N -0.91 -46.90 13.29 21.44 0.28 -46.62 16 15 Si 0.94 40.13 29.54 68.60 2.03 42.15 16 16 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 17 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 19 C 0.19 7.00 5.76 85.63 0.49 7.49 16 20 C 0.10 3.88 6.36 42.55 0.27 4.15 16 21 C -0.14 -4.94 9.58 22.36 0.21 -4.73 16 22 C -0.09 -2.55 10.18 22.47 0.23 -2.32 16 23 C -0.17 -4.55 10.11 22.36 0.23 -4.33 16 24 C 0.07 2.29 11.18 84.67 0.95 3.23 16 25 N -0.50 -19.67 10.27 -183.88 -1.89 -21.56 16 26 C -0.13 -4.72 8.48 22.41 0.19 -4.53 16 27 C -0.03 -0.87 6.31 22.31 0.14 -0.73 16 28 Cl -0.07 -1.85 27.28 -2.72 -0.07 -1.92 16 29 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.09 1.17 8.08 -2.39 -0.02 1.15 16 31 H 0.07 1.23 6.89 -2.39 -0.02 1.21 16 32 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 33 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 34 H 0.42 16.24 6.52 -92.72 -0.60 15.63 16 35 H 0.03 1.15 6.30 -2.38 -0.02 1.14 16 36 H 0.03 1.60 7.89 -2.39 -0.02 1.58 16 37 H 0.27 13.20 8.31 -92.71 -0.77 12.43 16 38 H 0.08 3.17 7.42 -2.39 -0.02 3.15 16 39 H 0.11 3.53 7.79 -2.38 -0.02 3.51 16 40 H 0.14 4.51 8.06 -2.91 -0.02 4.48 16 41 H 0.16 3.52 8.06 -2.91 -0.02 3.49 16 42 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 43 H 0.17 4.39 8.06 -2.91 -0.02 4.37 16 44 H 0.13 5.17 6.22 -2.91 -0.02 5.15 16 Total: -1.00 -63.95 389.68 3.55 -60.40 By element: Atomic # 1 Polarization: 36.49 SS G_CDS: 0.44 Total: 36.93 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: 6.54 Total: 15.53 kcal Atomic # 7 Polarization: -118.90 SS G_CDS: -5.33 Total: -124.23 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.05 Total: -28.87 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.15 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.07 Total: -1.92 kcal Total: -63.95 3.55 -60.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075105198.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.113 kcal (2) G-P(sol) polarization free energy of solvation -63.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds