Wall clock time and date at job start Tue Mar 31 2020 05:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38129 * 120.03187 * 2 1 4 4 C 1.38357 * 120.05621 * 180.27691 * 3 2 1 5 5 Cl 1.73602 * 119.94366 * 179.76867 * 4 3 2 6 6 C 1.38404 * 120.11556 * 359.75075 * 4 3 2 7 7 C 1.38095 * 120.05329 * 0.02562 * 6 4 3 8 8 C 1.38839 * 120.02487 * 179.79929 * 2 1 3 9 9 N 1.40002 * 120.05702 * 359.97438 * 8 2 1 10 10 C 1.34774 * 120.00269 * 154.91270 * 9 8 2 11 11 O 1.21593 * 119.99367 * 354.39107 * 10 9 8 12 12 N 1.34776 * 120.00335 * 174.38804 * 10 9 8 13 13 C 1.46493 * 119.99875 * 0.02562 * 12 10 9 14 14 C 1.50702 * 109.47439 * 270.00149 * 13 12 10 15 15 H 1.08002 * 119.99832 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00092 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00042 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00216 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47369 * 89.99497 * 18 16 14 20 20 H 1.48500 * 109.47161 * 209.99906 * 18 16 14 21 21 H 1.48500 * 109.46869 * 329.99915 * 18 16 14 22 22 C 1.46497 * 119.99822 * 180.02562 * 12 10 9 23 23 C 1.50699 * 109.47364 * 270.00066 * 22 12 10 24 24 C 1.38224 * 119.61926 * 95.02244 * 23 22 12 25 25 C 1.38622 * 119.16306 * 179.74971 * 24 23 22 26 26 C 1.38675 * 118.41852 * 0.47104 * 25 24 23 27 27 C 1.38177 * 119.16246 * 359.50695 * 26 25 24 28 28 N 1.31858 * 119.61737 * 275.00207 * 23 22 12 29 29 H 1.08999 * 109.46970 * 270.20673 * 1 2 3 30 30 H 1.09000 * 109.46517 * 30.20213 * 1 2 3 31 31 H 1.08995 * 109.47161 * 150.20142 * 1 2 3 32 32 H 1.07995 * 119.97439 * 0.05286 * 3 2 1 33 33 H 1.08000 * 119.97585 * 179.97438 * 6 4 3 34 34 H 1.08005 * 120.02719 * 179.97438 * 7 6 4 35 35 H 0.97002 * 119.99515 * 334.91674 * 9 8 2 36 36 H 1.09006 * 109.47057 * 30.00016 * 13 12 10 37 37 H 1.08996 * 109.47306 * 149.99836 * 13 12 10 38 38 H 0.97001 * 120.00539 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.46775 * 150.00107 * 22 12 10 40 40 H 1.09000 * 109.46973 * 30.00509 * 22 12 10 41 41 H 1.08004 * 120.41761 * 359.95987 * 24 23 22 42 42 H 1.08005 * 120.79132 * 180.23471 * 25 24 23 43 43 H 1.08000 * 120.41759 * 179.78286 * 26 25 24 44 44 H 1.08004 * 119.61872 * 180.24631 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5819 1.1964 -0.0058 5 17 4.4478 2.7011 -0.0118 6 6 4.2769 -0.0005 -0.0064 7 6 3.5905 -1.1987 -0.0017 8 6 2.2018 -1.2021 0.0042 9 7 1.5035 -2.4155 0.0090 10 6 2.0834 -3.5287 -0.4819 11 8 3.1710 -3.4602 -1.0212 12 7 1.4577 -4.7177 -0.3751 13 6 0.1472 -4.8000 0.2742 14 6 0.3319 -5.0493 1.7489 15 1 1.3261 -5.1381 2.1612 16 6 -0.7684 -5.1642 2.5718 17 7 -0.6072 -5.3823 3.8587 18 14 -2.4882 -5.0114 1.8587 19 1 -2.9714 -6.3517 1.4401 20 1 -3.4029 -4.4544 2.8873 21 1 -2.4573 -4.1066 0.6816 22 6 2.0884 -5.9277 -0.9083 23 6 1.6705 -6.1214 -2.3431 24 6 2.4785 -5.6481 -3.3599 25 6 2.0875 -5.8361 -4.6765 26 6 0.8881 -6.4875 -4.9221 27 6 0.1330 -6.9334 -3.8543 28 7 0.5385 -6.7409 -2.6142 29 1 -0.3633 0.0037 1.0277 30 1 -0.3632 0.8882 -0.5170 31 1 -0.3633 -0.8917 -0.5107 32 1 1.6585 2.1312 0.0009 33 1 5.3569 0.0026 -0.0113 34 1 4.1332 -2.1325 -0.0026 35 1 0.6023 -2.4550 0.3657 36 1 -0.3899 -3.8626 0.1287 37 1 -0.4246 -5.6180 -0.1638 38 1 -1.3813 -5.4635 4.4376 39 1 1.7759 -6.7899 -0.3192 40 1 3.1724 -5.8256 -0.8561 41 1 3.4044 -5.1412 -3.1315 42 1 2.7005 -5.4804 -5.4914 43 1 0.5507 -6.6481 -5.9354 44 1 -0.8003 -7.4451 -4.0373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075110188.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:36 Heat of formation + Delta-G solvation = 36.511352 kcal Electronic energy + Delta-G solvation = -29437.672757 eV Core-core repulsion = 25381.226063 eV Total energy + Delta-G solvation = -4056.446694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 359.114 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.66456 -39.96258 -38.68668 -36.49596 -35.45629 -34.45818 -32.84489 -32.48548 -32.31292 -31.57775 -29.30683 -28.29119 -26.99333 -26.03918 -23.43545 -23.12115 -22.51274 -21.97038 -21.16995 -19.46277 -18.07051 -17.20010 -16.95644 -16.67086 -16.23159 -15.99994 -15.56803 -15.35167 -14.99520 -14.71470 -14.37038 -13.93547 -13.81791 -13.69453 -13.28855 -13.20571 -13.11461 -12.89962 -12.71617 -12.66042 -12.51769 -12.08663 -11.84505 -11.66658 -11.56219 -11.51343 -11.27579 -11.06907 -10.77197 -10.74599 -10.37202 -9.99628 -9.81673 -9.74230 -9.55099 -9.30370 -8.92374 -8.78654 -8.69905 -8.09156 -7.58731 -6.27631 -4.30684 1.16597 1.29290 1.39087 1.43336 2.24844 3.02992 3.14008 3.20543 3.23919 3.41735 3.88575 3.96994 4.20649 4.37868 4.51125 4.82286 4.87172 4.91742 4.92822 5.02499 5.14599 5.20103 5.26568 5.35004 5.53049 5.63627 5.66228 5.67124 5.71747 5.89168 5.95985 6.10311 6.12620 6.20973 6.22998 6.26211 6.28590 6.41454 6.47417 6.57136 6.65593 6.80333 7.00707 7.16231 7.34135 7.42550 8.12605 8.17177 8.38327 8.77413 8.92401 9.30707 10.84637 Molecular weight = 359.11amu Principal moments of inertia in cm(-1) A = 0.007576 B = 0.003751 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3695.043519 B = 7462.957576 C = 9992.711352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.116 4.116 3 C -0.088 4.088 4 C -0.063 4.063 5 Cl -0.087 7.087 6 C -0.093 4.093 7 C -0.119 4.119 8 C 0.194 3.806 9 N -0.674 5.674 10 C 0.712 3.288 11 O -0.594 6.594 12 N -0.593 5.593 13 C 0.210 3.790 14 C -0.545 4.545 15 H 0.080 0.920 16 C 0.080 3.920 17 N -0.886 5.886 18 Si 0.870 3.130 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.267 1.267 22 C 0.185 3.815 23 C 0.115 3.885 24 C -0.147 4.147 25 C -0.083 4.083 26 C -0.179 4.179 27 C 0.093 3.907 28 N -0.468 5.468 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.159 0.841 35 H 0.417 0.583 36 H 0.020 0.980 37 H 0.046 0.954 38 H 0.267 0.733 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.140 0.860 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.698 6.778 -13.277 15.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.120 4.120 3 C -0.108 4.108 4 C -0.090 4.090 5 Cl -0.058 7.058 6 C -0.113 4.113 7 C -0.140 4.140 8 C 0.096 3.904 9 N -0.321 5.321 10 C 0.414 3.586 11 O -0.475 6.475 12 N -0.325 5.325 13 C 0.089 3.911 14 C -0.583 4.583 15 H 0.099 0.901 16 C -0.125 4.125 17 N -0.523 5.523 18 Si 0.696 3.304 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.191 1.191 22 C 0.060 3.940 23 C -0.024 4.024 24 C -0.168 4.168 25 C -0.109 4.109 26 C -0.199 4.199 27 C -0.065 4.065 28 N -0.177 5.177 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.176 0.824 35 H 0.257 0.743 36 H 0.037 0.963 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.158 0.842 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.856 6.478 -12.743 14.806 hybrid contribution -1.005 0.442 -0.783 1.349 sum 2.851 6.920 -13.527 15.459 Atomic orbital electron populations 1.20731 0.90511 1.02967 1.02920 1.19477 0.96272 0.91006 1.05254 1.20565 0.91731 0.97643 1.00830 1.20739 0.92228 0.86547 1.09535 1.98334 1.77126 1.33047 1.97298 1.20898 1.00180 0.90170 1.00004 1.21467 0.92609 0.99315 1.00585 1.17548 0.91402 0.84386 0.97056 1.42907 1.19789 1.05987 1.63378 1.15756 0.83569 0.80553 0.78713 1.90775 1.20891 1.85359 1.50469 1.47040 1.22198 1.04476 1.58762 1.19820 0.79749 0.97373 0.94128 1.21352 0.95686 1.51339 0.89913 0.90145 1.24850 0.98844 0.94127 0.94650 1.69882 1.30879 1.47763 1.03797 0.86954 0.84881 0.79371 0.79158 1.19601 1.20859 1.19133 1.20098 0.98225 0.88171 0.87497 1.21917 0.90134 0.93010 0.97318 1.22152 1.01880 0.99808 0.92942 1.21573 0.95973 0.96381 0.96989 1.22100 0.96348 1.00917 1.00564 1.22749 0.99181 0.96798 0.87764 1.67573 1.14543 1.12922 1.22661 0.90556 0.91063 0.91600 0.85068 0.85105 0.82372 0.74273 0.96258 0.93648 0.92264 0.87979 0.88659 0.84194 0.85202 0.85257 0.83057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 9.45 36.01 0.34 -1.05 16 2 C -0.12 -1.66 5.90 -104.44 -0.62 -2.27 16 3 C -0.09 -1.15 9.48 -39.58 -0.38 -1.53 16 4 C -0.06 -0.84 6.32 -39.48 -0.25 -1.09 16 5 Cl -0.09 -1.03 28.95 -51.86 -1.50 -2.53 16 6 C -0.09 -1.31 9.82 -39.57 -0.39 -1.70 16 7 C -0.12 -1.93 8.72 -39.40 -0.34 -2.28 16 8 C 0.19 3.22 6.41 -83.67 -0.54 2.68 16 9 N -0.67 -12.14 4.85 -14.21 -0.07 -12.21 16 10 C 0.71 13.80 8.08 -86.92 -0.70 13.10 16 11 O -0.59 -11.73 13.04 5.28 0.07 -11.66 16 12 N -0.59 -11.57 2.44 -182.19 -0.44 -12.02 16 13 C 0.21 4.52 4.04 -5.20 -0.02 4.49 16 14 C -0.54 -13.82 9.94 -34.44 -0.34 -14.17 16 15 H 0.08 2.30 8.06 -52.49 -0.42 1.87 16 16 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 17 N -0.89 -25.13 13.96 55.43 0.77 -24.36 16 18 Si 0.87 19.40 27.47 -169.99 -4.67 14.73 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 21 H -0.27 -5.57 6.54 56.52 0.37 -5.20 16 22 C 0.18 3.22 5.71 -5.20 -0.03 3.19 16 23 C 0.12 1.87 6.36 -82.59 -0.53 1.35 16 24 C -0.15 -2.11 9.72 -39.44 -0.38 -2.49 16 25 C -0.08 -0.99 10.18 -39.28 -0.40 -1.39 16 26 C -0.18 -2.02 10.11 -39.44 -0.40 -2.42 16 27 C 0.09 1.22 11.18 -17.55 -0.20 1.02 16 28 N -0.47 -7.69 10.27 -9.47 -0.10 -7.79 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 31 H 0.07 0.84 6.99 -51.93 -0.36 0.48 16 32 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.16 2.79 5.79 -52.48 -0.30 2.48 16 35 H 0.42 7.47 5.11 -40.82 -0.21 7.26 16 36 H 0.02 0.41 5.35 -51.93 -0.28 0.13 16 37 H 0.05 1.00 7.50 -51.93 -0.39 0.61 16 38 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.10 1.82 8.07 -51.93 -0.42 1.41 16 40 H 0.10 1.56 7.32 -51.93 -0.38 1.18 16 41 H 0.14 1.98 8.01 -52.48 -0.42 1.56 16 42 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 43 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.15 1.58 8.06 -52.48 -0.42 1.15 16 LS Contribution 385.64 15.07 5.81 5.81 Total: -1.00 -29.44 385.64 -10.70 -40.14 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -5.31 Total: 12.44 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -5.27 Total: -2.55 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.16 Total: -56.38 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.07 Total: -11.66 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.67 Total: 14.73 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.50 Total: -2.53 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.44 -10.70 -40.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075110188.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.653 kcal (2) G-P(sol) polarization free energy of solvation -29.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds