Wall clock time and date at job start Tue Mar 31 2020 05:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38129 * 120.03187 * 2 1 4 4 C 1.38357 * 120.05621 * 180.27691 * 3 2 1 5 5 Cl 1.73602 * 119.94366 * 179.76867 * 4 3 2 6 6 C 1.38404 * 120.11556 * 359.75075 * 4 3 2 7 7 C 1.38095 * 120.05329 * 0.02562 * 6 4 3 8 8 C 1.38839 * 120.02487 * 179.79929 * 2 1 3 9 9 N 1.40002 * 120.05702 * 359.97438 * 8 2 1 10 10 C 1.34774 * 120.00269 * 154.91270 * 9 8 2 11 11 O 1.21593 * 119.99367 * 354.39107 * 10 9 8 12 12 N 1.34776 * 120.00335 * 174.38804 * 10 9 8 13 13 C 1.46493 * 119.99875 * 0.02562 * 12 10 9 14 14 C 1.50702 * 109.47439 * 270.00149 * 13 12 10 15 15 H 1.08002 * 119.99832 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00092 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00042 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00216 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47369 * 89.99497 * 18 16 14 20 20 H 1.48500 * 109.47161 * 209.99906 * 18 16 14 21 21 H 1.48500 * 109.46869 * 329.99915 * 18 16 14 22 22 C 1.46497 * 119.99822 * 180.02562 * 12 10 9 23 23 C 1.50699 * 109.47364 * 270.00066 * 22 12 10 24 24 C 1.38224 * 119.61926 * 95.02244 * 23 22 12 25 25 C 1.38622 * 119.16306 * 179.74971 * 24 23 22 26 26 C 1.38675 * 118.41852 * 0.47104 * 25 24 23 27 27 C 1.38177 * 119.16246 * 359.50695 * 26 25 24 28 28 N 1.31858 * 119.61737 * 275.00207 * 23 22 12 29 29 H 1.08999 * 109.46970 * 270.20673 * 1 2 3 30 30 H 1.09000 * 109.46517 * 30.20213 * 1 2 3 31 31 H 1.08995 * 109.47161 * 150.20142 * 1 2 3 32 32 H 1.07995 * 119.97439 * 0.05286 * 3 2 1 33 33 H 1.08000 * 119.97585 * 179.97438 * 6 4 3 34 34 H 1.08005 * 120.02719 * 179.97438 * 7 6 4 35 35 H 0.97002 * 119.99515 * 334.91674 * 9 8 2 36 36 H 1.09006 * 109.47057 * 30.00016 * 13 12 10 37 37 H 1.08996 * 109.47306 * 149.99836 * 13 12 10 38 38 H 0.97001 * 120.00539 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.46775 * 150.00107 * 22 12 10 40 40 H 1.09000 * 109.46973 * 30.00509 * 22 12 10 41 41 H 1.08004 * 120.41761 * 359.95987 * 24 23 22 42 42 H 1.08005 * 120.79132 * 180.23471 * 25 24 23 43 43 H 1.08000 * 120.41759 * 179.78286 * 26 25 24 44 44 H 1.08004 * 119.61872 * 180.24631 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5819 1.1964 -0.0058 5 17 4.4478 2.7011 -0.0118 6 6 4.2769 -0.0005 -0.0064 7 6 3.5905 -1.1987 -0.0017 8 6 2.2018 -1.2021 0.0042 9 7 1.5035 -2.4155 0.0090 10 6 2.0834 -3.5287 -0.4819 11 8 3.1710 -3.4602 -1.0212 12 7 1.4577 -4.7177 -0.3751 13 6 0.1472 -4.8000 0.2742 14 6 0.3319 -5.0493 1.7489 15 1 1.3261 -5.1381 2.1612 16 6 -0.7684 -5.1642 2.5718 17 7 -0.6072 -5.3823 3.8587 18 14 -2.4882 -5.0114 1.8587 19 1 -2.9714 -6.3517 1.4401 20 1 -3.4029 -4.4544 2.8873 21 1 -2.4573 -4.1066 0.6816 22 6 2.0884 -5.9277 -0.9083 23 6 1.6705 -6.1214 -2.3431 24 6 2.4785 -5.6481 -3.3599 25 6 2.0875 -5.8361 -4.6765 26 6 0.8881 -6.4875 -4.9221 27 6 0.1330 -6.9334 -3.8543 28 7 0.5385 -6.7409 -2.6142 29 1 -0.3633 0.0037 1.0277 30 1 -0.3632 0.8882 -0.5170 31 1 -0.3633 -0.8917 -0.5107 32 1 1.6585 2.1312 0.0009 33 1 5.3569 0.0026 -0.0113 34 1 4.1332 -2.1325 -0.0026 35 1 0.6023 -2.4550 0.3657 36 1 -0.3899 -3.8626 0.1287 37 1 -0.4246 -5.6180 -0.1638 38 1 -1.3813 -5.4635 4.4376 39 1 1.7759 -6.7899 -0.3192 40 1 3.1724 -5.8256 -0.8561 41 1 3.4044 -5.1412 -3.1315 42 1 2.7005 -5.4804 -5.4914 43 1 0.5507 -6.6481 -5.9354 44 1 -0.8003 -7.4451 -4.0373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075110188.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:35 Heat of formation + Delta-G solvation = 21.521888 kcal Electronic energy + Delta-G solvation = -29438.322749 eV Core-core repulsion = 25381.226063 eV Total energy + Delta-G solvation = -4057.096686 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 359.114 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.01902 -41.04381 -39.93541 -37.57201 -36.97857 -35.77381 -34.68974 -33.62623 -33.38648 -32.81035 -30.52010 -30.00820 -28.10307 -27.32524 -24.79319 -24.33239 -24.00680 -23.09728 -22.31376 -20.88694 -19.44558 -19.13194 -18.37703 -17.73433 -17.44798 -17.11498 -16.85671 -16.48764 -16.33855 -16.10836 -15.98320 -15.19931 -15.01398 -14.90155 -14.69197 -14.34269 -14.29668 -14.16740 -14.02585 -13.82326 -13.70069 -13.56949 -13.24472 -12.80155 -12.79062 -12.71858 -12.62257 -12.46712 -12.34793 -12.04238 -11.82738 -11.74406 -11.30366 -10.99646 -10.80668 -10.80001 -10.41745 -9.98021 -9.81675 -9.61116 -8.86143 -8.32044 -6.40373 0.12047 0.12849 0.30651 0.39281 1.18416 1.36932 1.40136 1.47290 1.66152 2.01553 2.31447 2.68543 2.76862 3.01022 3.05726 3.38321 3.76004 3.80851 3.85007 4.03325 4.16933 4.17479 4.25676 4.27014 4.35403 4.47103 4.55113 4.58984 4.60824 4.75432 4.77128 4.80675 4.88560 4.92131 5.03672 5.12228 5.22915 5.26431 5.28485 5.30985 5.37781 5.43527 5.53232 5.81565 5.91939 5.94448 6.18867 6.63826 6.80263 7.10231 7.24703 7.43262 8.83934 Molecular weight = 359.11amu Principal moments of inertia in cm(-1) A = 0.007576 B = 0.003751 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3695.043519 B = 7462.957576 C = 9992.711352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.114 4.114 3 C -0.084 4.084 4 C -0.062 4.062 5 Cl -0.068 7.068 6 C -0.094 4.094 7 C -0.136 4.136 8 C 0.164 3.836 9 N -0.674 5.674 10 C 0.706 3.294 11 O -0.603 6.603 12 N -0.598 5.598 13 C 0.226 3.774 14 C -0.541 4.541 15 H 0.033 0.967 16 C 0.025 3.975 17 N -0.937 5.937 18 Si 0.937 3.063 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.240 1.240 22 C 0.185 3.815 23 C 0.094 3.906 24 C -0.158 4.158 25 C -0.080 4.080 26 C -0.163 4.163 27 C 0.081 3.919 28 N -0.502 5.502 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.161 0.839 33 H 0.146 0.854 34 H 0.136 0.864 35 H 0.415 0.585 36 H 0.034 0.966 37 H 0.045 0.955 38 H 0.269 0.731 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.133 0.867 42 H 0.162 0.838 43 H 0.171 0.829 44 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.153 8.692 -16.295 18.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.117 4.117 3 C -0.102 4.102 4 C -0.090 4.090 5 Cl -0.039 7.039 6 C -0.113 4.113 7 C -0.157 4.157 8 C 0.067 3.933 9 N -0.321 5.321 10 C 0.408 3.592 11 O -0.484 6.484 12 N -0.330 5.330 13 C 0.104 3.896 14 C -0.579 4.579 15 H 0.051 0.949 16 C -0.174 4.174 17 N -0.576 5.576 18 Si 0.760 3.240 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.163 1.163 22 C 0.061 3.939 23 C -0.044 4.044 24 C -0.178 4.178 25 C -0.106 4.106 26 C -0.182 4.182 27 C -0.076 4.076 28 N -0.213 5.213 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.178 0.822 33 H 0.164 0.836 34 H 0.154 0.846 35 H 0.255 0.745 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.113 0.887 41 H 0.151 0.849 42 H 0.180 0.820 43 H 0.188 0.812 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.348 8.418 -15.783 18.041 hybrid contribution -0.378 -0.106 0.125 0.412 sum 1.970 8.311 -15.658 17.836 Atomic orbital electron populations 1.20805 0.88905 1.03937 1.03507 1.19749 0.97514 0.90390 1.04085 1.20896 0.91681 0.98280 0.99391 1.20869 0.92713 0.87020 1.08356 1.98344 1.76807 1.31618 1.97149 1.21020 1.01000 0.89768 0.99544 1.21345 0.92810 0.99387 1.02152 1.17848 0.91702 0.84653 0.99118 1.42858 1.19695 1.06243 1.63310 1.15895 0.83585 0.80825 0.78873 1.90759 1.21151 1.85549 1.50971 1.47043 1.21731 1.05279 1.58991 1.19507 0.80961 0.97724 0.91439 1.21447 0.93635 1.50696 0.92164 0.94898 1.25710 1.03393 0.93608 0.94724 1.70039 1.32283 1.49700 1.05578 0.85873 0.79001 0.79895 0.79236 1.19367 1.20605 1.16270 1.20067 0.98068 0.86852 0.88916 1.21563 0.91269 0.95069 0.96473 1.22145 1.01550 1.00143 0.93970 1.21970 0.96560 0.95544 0.96523 1.22523 0.95171 0.98599 1.01947 1.23294 1.00349 0.96796 0.87208 1.67481 1.14924 1.13966 1.24885 0.90093 0.88265 0.92429 0.82163 0.83579 0.84620 0.74506 0.94827 0.93692 0.92176 0.89593 0.88715 0.84921 0.82017 0.81178 0.80531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.55 9.45 71.24 0.67 -1.87 16 2 C -0.11 -3.09 5.90 -19.74 -0.12 -3.21 16 3 C -0.08 -1.97 9.48 22.27 0.21 -1.76 16 4 C -0.06 -1.55 6.32 22.34 0.14 -1.41 16 5 Cl -0.07 -1.45 28.95 -2.72 -0.08 -1.53 16 6 C -0.09 -2.60 9.82 22.28 0.22 -2.38 16 7 C -0.14 -4.56 8.72 22.39 0.20 -4.36 16 8 C 0.16 5.49 6.41 38.13 0.24 5.73 16 9 N -0.67 -24.99 4.85 -317.15 -1.54 -26.53 16 10 C 0.71 28.60 8.08 179.06 1.45 30.05 16 11 O -0.60 -25.03 13.04 -4.01 -0.05 -25.08 16 12 N -0.60 -24.45 2.44 -848.59 -2.07 -26.52 16 13 C 0.23 9.90 4.04 85.64 0.35 10.24 16 14 C -0.54 -28.73 9.94 25.60 0.25 -28.47 16 15 H 0.03 2.02 8.06 -2.91 -0.02 1.99 16 16 C 0.03 1.36 5.47 84.65 0.46 1.83 16 17 N -0.94 -55.16 13.96 21.45 0.30 -54.86 16 18 Si 0.94 39.92 27.47 68.60 1.88 41.80 16 19 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 20 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.24 -9.08 6.54 99.48 0.65 -8.43 16 22 C 0.19 6.89 5.71 85.63 0.49 7.38 16 23 C 0.09 3.13 6.36 42.55 0.27 3.40 16 24 C -0.16 -4.47 9.72 22.36 0.22 -4.26 16 25 C -0.08 -1.70 10.18 22.47 0.23 -1.47 16 26 C -0.16 -3.09 10.11 22.36 0.23 -2.87 16 27 C 0.08 1.95 11.18 84.67 0.95 2.90 16 28 N -0.50 -16.38 10.27 -183.89 -1.89 -18.27 16 29 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.10 1.62 8.09 -2.39 -0.02 1.60 16 31 H 0.06 1.38 6.99 -2.39 -0.02 1.36 16 32 H 0.16 2.83 8.06 -2.91 -0.02 2.80 16 33 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 34 H 0.14 5.11 5.79 -2.91 -0.02 5.10 16 35 H 0.42 15.14 5.11 -92.71 -0.47 14.66 16 36 H 0.03 1.40 5.35 -2.38 -0.01 1.38 16 37 H 0.05 1.99 7.50 -2.39 -0.02 1.98 16 38 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 39 H 0.09 3.36 8.07 -2.39 -0.02 3.34 16 40 H 0.09 3.40 7.32 -2.39 -0.02 3.38 16 41 H 0.13 3.86 8.01 -2.91 -0.02 3.84 16 42 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 43 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 44 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -67.31 385.64 3.53 -63.78 By element: Atomic # 1 Polarization: 37.24 SS G_CDS: 0.52 Total: 37.76 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 6.46 Total: 9.46 kcal Atomic # 7 Polarization: -120.99 SS G_CDS: -5.20 Total: -126.19 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.05 Total: -25.08 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 1.88 Total: 41.80 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.08 Total: -1.53 kcal Total: -67.31 3.53 -63.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075110188.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.302 kcal (2) G-P(sol) polarization free energy of solvation -67.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds