Wall clock time and date at job start Tue Mar 31 2020 05:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30836 * 125.89648 * 2 1 4 4 N 1.40083 * 108.20704 * 180.02562 * 3 2 1 5 5 C 1.46496 * 126.04282 * 179.97438 * 4 3 2 6 6 C 1.34951 * 107.92428 * 359.76344 * 4 3 2 7 7 C 1.50704 * 126.12949 * 180.24161 * 6 4 3 8 8 C 1.35313 * 107.74489 * 0.38555 * 6 4 3 9 9 C 1.50699 * 126.04269 * 179.87644 * 8 6 4 10 10 H 1.09006 * 110.42216 * 12.40492 * 9 8 6 11 11 C 1.54903 * 110.37594 * 250.09084 * 9 8 6 12 12 C 1.55137 * 101.65525 * 204.09746 * 11 9 8 13 13 C 1.54322 * 103.01919 * 35.65420 * 12 11 9 14 14 N 1.47441 * 107.23186 * 337.71263 * 13 12 11 15 15 C 1.46899 * 111.00167 * 236.74258 * 14 13 12 16 16 C 1.52993 * 109.47209 * 290.12482 * 15 14 13 17 17 C 1.50704 * 109.47148 * 180.02562 * 16 15 14 18 18 O 1.21295 * 119.99525 * 0.02562 * 17 16 15 19 19 N 1.34774 * 119.99866 * 180.02562 * 17 16 15 20 20 C 1.37106 * 119.99622 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00024 * 17.72286 * 20 19 17 22 22 C 1.38951 * 119.99602 * 197.71729 * 20 19 17 23 23 N 1.31411 * 120.00104 * 21.40346 * 22 20 19 24 24 Si 1.86797 * 119.99694 * 201.39770 * 22 20 19 25 25 H 1.48503 * 109.46881 * 90.00666 * 24 22 20 26 26 H 1.48503 * 109.47266 * 210.00157 * 24 22 20 27 27 H 1.48496 * 109.47284 * 330.00572 * 24 22 20 28 28 C 1.46502 * 120.00270 * 359.97438 * 19 17 16 29 29 C 1.47195 * 109.46747 * 84.23635 * 28 19 17 30 30 N 8.32901 * 57.67905 * 137.40436 * 2 1 3 31 31 H 1.09000 * 109.46575 * 269.96948 * 1 2 3 32 32 H 1.09000 * 109.46864 * 29.97469 * 1 2 3 33 33 H 1.09002 * 109.46659 * 149.97679 * 1 2 3 34 34 H 1.09003 * 109.46922 * 90.02557 * 5 4 3 35 35 H 1.08997 * 109.47724 * 210.02532 * 5 4 3 36 36 H 1.09004 * 109.46666 * 330.03252 * 5 4 3 37 37 H 1.09000 * 109.46605 * 270.17172 * 7 6 4 38 38 H 1.08995 * 109.46955 * 30.16931 * 7 6 4 39 39 H 1.09000 * 109.47064 * 150.17061 * 7 6 4 40 40 H 1.08999 * 110.99344 * 86.00516 * 11 9 8 41 41 H 1.09005 * 110.99078 * 322.18599 * 11 9 8 42 42 H 1.08997 * 110.71123 * 277.27062 * 12 11 9 43 43 H 1.09003 * 110.70624 * 154.03114 * 12 11 9 44 44 H 1.08996 * 109.89118 * 97.12081 * 13 12 11 45 45 H 1.09001 * 109.88913 * 218.14989 * 13 12 11 46 46 H 1.08998 * 109.47123 * 50.13224 * 15 14 13 47 47 H 1.09003 * 109.46804 * 170.12908 * 15 14 13 48 48 H 1.08998 * 109.47684 * 300.00399 * 16 15 14 49 49 H 1.09003 * 109.46890 * 60.00478 * 16 15 14 50 50 H 0.96998 * 120.00065 * 179.97438 * 23 22 20 51 51 H 1.08996 * 109.47130 * 204.23562 * 28 19 17 52 52 H 1.08996 * 109.46933 * 324.23600 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0006 5 6 4.7899 1.5008 -0.0013 6 6 3.6143 -0.7153 0.0044 7 6 4.8352 -1.5988 0.0108 8 6 2.3273 -1.1330 -0.0007 9 6 1.8600 -2.5657 -0.0005 10 1 2.6897 -3.2363 0.2237 11 6 1.2288 -2.9273 -1.3681 12 6 0.2968 -4.1057 -0.9813 13 6 -0.2073 -3.7044 0.4210 14 7 0.7690 -2.7513 0.9799 15 6 1.2929 -3.2280 2.2668 16 6 0.1908 -3.1537 3.3252 17 6 0.7285 -3.6422 4.6456 18 8 1.8802 -4.0129 4.7315 19 7 -0.0704 -3.6672 5.7308 20 6 0.4190 -4.1111 6.9321 21 1 1.4854 -4.1682 7.0929 22 6 -0.4571 -4.4875 7.9428 23 7 -1.6930 -4.8244 7.6494 24 14 0.1218 -4.5146 9.7186 25 1 -0.1241 -3.1883 10.3397 26 1 -0.6249 -5.5576 10.4668 27 1 1.5746 -4.8194 9.7610 28 6 -1.4613 -3.2189 5.6270 29 6 -2.2987 -4.3270 5.1398 30 7 -2.9461 -5.1814 4.7638 31 1 -0.3632 -0.0005 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3633 -0.8898 -0.5142 34 1 5.0836 1.7155 1.0262 35 1 5.6090 0.9984 -0.5158 36 1 4.5559 2.4335 -0.5147 37 1 5.1339 -1.8130 -1.0154 38 1 5.6490 -1.0902 0.5275 39 1 4.6055 -2.5322 0.5248 40 1 1.9913 -3.2492 -2.0773 41 1 0.6552 -2.0906 -1.7669 42 1 0.8555 -5.0406 -0.9370 43 1 -0.5348 -4.1852 -1.6815 44 1 -1.1853 -3.2299 0.3418 45 1 -0.2738 -4.5867 1.0576 46 1 1.6279 -4.2600 2.1628 47 1 2.1321 -2.6026 2.5715 48 1 -0.1442 -2.1217 3.4292 49 1 -0.6484 -3.7791 3.0205 50 1 -2.3045 -5.0875 8.3548 51 1 -1.8145 -2.9005 6.6078 52 1 -1.5226 -2.3833 4.9299 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075132464.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:41 Heat of formation + Delta-G solvation = 82.039587 kcal Electronic energy + Delta-G solvation = -33177.156847 eV Core-core repulsion = 28985.934181 eV Total energy + Delta-G solvation = -4191.222666 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.206 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.41568 -39.20983 -38.43546 -35.77879 -34.36316 -34.10336 -33.04309 -32.41954 -31.79231 -29.57496 -29.20877 -28.76501 -27.35388 -26.47057 -25.24061 -24.90887 -22.92128 -21.40830 -20.67692 -19.48058 -19.14052 -18.78023 -17.85512 -16.76238 -16.38151 -16.18087 -15.94375 -15.73341 -15.12064 -14.55322 -14.41862 -14.26726 -13.97695 -13.83638 -13.53417 -13.44397 -13.30427 -13.01052 -12.93322 -12.84872 -12.79607 -12.64641 -12.45966 -12.13881 -11.97754 -11.91897 -11.80991 -11.66059 -11.47757 -11.30002 -11.24108 -11.18645 -11.08807 -11.04187 -10.77703 -10.56166 -10.41830 -10.38226 -10.29430 -10.21946 -9.23568 -8.96614 -8.55716 -8.18595 -8.11689 -8.01404 -6.48108 -3.97136 1.86657 2.50172 2.81323 3.11777 3.23418 3.27426 3.59378 3.82851 4.01733 4.03364 4.17437 4.45386 4.57903 4.68339 4.76435 4.87952 4.93232 4.95892 4.96604 5.06497 5.10385 5.20076 5.24019 5.27306 5.32372 5.42774 5.47615 5.51345 5.54847 5.60564 5.66362 5.75984 5.78104 5.83568 5.89800 5.93504 6.02287 6.04964 6.13687 6.17762 6.19708 6.24166 6.29073 6.44579 6.45715 6.55062 6.83353 7.02573 7.21473 7.31525 7.49401 7.84832 7.94229 8.31401 8.77181 9.03585 9.23385 9.78315 10.58168 Molecular weight = 359.21amu Principal moments of inertia in cm(-1) A = 0.012039 B = 0.002745 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.146195 B =10196.269148 C =11274.979788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.108 3.892 3 N -0.309 5.309 4 N -0.380 5.380 5 C 0.105 3.895 6 C 0.083 3.917 7 C -0.093 4.093 8 C -0.212 4.212 9 C 0.154 3.846 10 H 0.058 0.942 11 C -0.118 4.118 12 C -0.143 4.143 13 C 0.039 3.961 14 N -0.521 5.521 15 C 0.077 3.923 16 C -0.128 4.128 17 C 0.458 3.542 18 O -0.577 6.577 19 N -0.445 5.445 20 C -0.313 4.313 21 H 0.108 0.892 22 C 0.032 3.968 23 N -0.878 5.878 24 Si 0.926 3.074 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.269 1.269 28 C 0.222 3.778 29 C 0.248 3.752 30 N -0.475 5.475 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.058 0.942 46 H 0.039 0.961 47 H 0.077 0.923 48 H 0.088 0.912 49 H 0.076 0.924 50 H 0.273 0.727 51 H 0.126 0.874 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.346 10.328 -17.635 21.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.058 4.058 3 N -0.131 5.131 4 N -0.162 5.162 5 C -0.037 4.037 6 C -0.045 4.045 7 C -0.151 4.151 8 C -0.224 4.224 9 C 0.045 3.955 10 H 0.076 0.924 11 C -0.156 4.156 12 C -0.181 4.181 13 C -0.089 4.089 14 N -0.245 5.245 15 C -0.051 4.051 16 C -0.169 4.169 17 C 0.246 3.754 18 O -0.460 6.460 19 N -0.165 5.165 20 C -0.440 4.440 21 H 0.125 0.875 22 C -0.172 4.172 23 N -0.517 5.517 24 Si 0.753 3.247 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.194 1.194 28 C 0.094 3.906 29 C -0.071 4.071 30 N -0.155 5.155 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.076 0.924 46 H 0.058 0.942 47 H 0.095 0.905 48 H 0.106 0.894 49 H 0.095 0.905 50 H 0.083 0.917 51 H 0.144 0.856 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.748 10.664 -17.906 21.907 hybrid contribution 0.773 -1.431 1.250 2.051 sum 7.520 9.234 -16.657 20.476 Atomic orbital electron populations 1.20126 0.86470 1.02006 1.03364 1.22109 0.96909 0.89596 0.97207 1.77310 0.86018 1.22732 1.27036 1.48197 1.05548 1.03904 1.58563 1.21741 0.84027 0.94788 1.03129 1.20776 0.96818 0.84641 1.02220 1.20458 0.93125 0.98620 1.02912 1.19404 0.90617 0.95521 1.16864 1.20598 0.92917 0.90901 0.91112 0.92384 1.22731 0.98565 0.98043 0.96296 1.22800 0.99596 0.98265 0.97463 1.22852 0.96871 0.94872 0.94263 1.63388 1.13258 1.44979 1.02858 1.21855 0.96726 0.98863 0.87622 1.21530 0.99180 1.02628 0.93558 1.20170 0.87190 0.83339 0.84653 1.90531 1.18419 1.52246 1.84854 1.43639 1.07522 1.56530 1.08831 1.19721 0.94383 1.42457 0.87486 0.87483 1.25257 0.95555 0.95648 1.00734 1.69861 1.06174 1.41918 1.33720 0.85920 0.79058 0.77941 0.81809 1.20160 1.21158 1.19401 1.18728 0.80834 0.88351 1.02700 1.29320 0.93049 0.94591 0.90095 1.80887 1.10975 1.09854 1.13773 0.90114 0.92399 0.90172 0.91023 0.89921 0.89554 0.90487 0.91225 0.89541 0.91309 0.90498 0.91637 0.90904 0.90469 0.92403 0.94250 0.90485 0.89393 0.90518 0.91687 0.85644 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.69 9.50 36.01 0.34 -0.35 16 2 C 0.11 1.46 7.09 -82.40 -0.58 0.88 16 3 N -0.31 -4.43 12.58 33.67 0.42 -4.01 16 4 N -0.38 -4.57 4.01 -63.89 -0.26 -4.83 16 5 C 0.10 0.79 11.09 59.84 0.66 1.45 16 6 C 0.08 0.97 6.93 -82.26 -0.57 0.40 16 7 C -0.09 -0.77 9.63 36.01 0.35 -0.43 16 8 C -0.21 -2.71 5.10 -105.05 -0.54 -3.24 16 9 C 0.15 1.82 2.48 -67.34 -0.17 1.65 16 10 H 0.06 0.70 6.53 -51.93 -0.34 0.37 16 11 C -0.12 -1.16 6.23 -24.60 -0.15 -1.31 16 12 C -0.14 -1.39 6.94 -24.91 -0.17 -1.56 16 13 C 0.04 0.46 6.20 -2.83 -0.02 0.45 16 14 N -0.52 -6.77 3.62 -224.75 -0.81 -7.58 16 15 C 0.08 1.24 3.83 -3.83 -0.01 1.23 16 16 C -0.13 -2.21 4.33 -27.88 -0.12 -2.34 16 17 C 0.46 10.32 7.57 -10.98 -0.08 10.24 16 18 O -0.58 -14.98 15.63 5.54 0.09 -14.89 16 19 N -0.44 -10.38 2.60 -117.93 -0.31 -10.69 16 20 C -0.31 -8.11 9.32 -14.93 -0.14 -8.25 16 21 H 0.11 2.94 7.39 -52.49 -0.39 2.55 16 22 C 0.03 0.78 4.87 -17.47 -0.08 0.70 16 23 N -0.88 -22.22 9.48 55.50 0.53 -21.69 16 24 Si 0.93 19.77 29.60 -169.99 -5.03 14.74 16 25 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 26 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 28 C 0.22 4.40 4.91 -6.83 -0.03 4.37 16 29 C 0.25 5.45 12.95 -20.76 -0.27 5.18 16 30 N -0.47 -11.21 18.54 42.15 0.78 -10.42 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.84 6.07 -51.93 -0.32 0.52 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.41 7.68 -51.93 -0.40 0.02 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.49 7.74 -51.93 -0.40 0.08 16 39 H 0.09 0.76 7.05 -51.93 -0.37 0.40 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.76 6.65 -51.93 -0.35 0.42 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 0.78 6.92 -51.93 -0.36 0.42 16 46 H 0.04 0.68 7.92 -51.93 -0.41 0.27 16 47 H 0.08 1.35 8.03 -51.93 -0.42 0.94 16 48 H 0.09 1.36 7.42 -51.93 -0.39 0.98 16 49 H 0.08 1.31 6.51 -51.93 -0.34 0.98 16 50 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 51 H 0.13 2.57 6.46 -51.93 -0.34 2.23 16 52 H 0.09 1.31 6.68 -51.93 -0.35 0.96 16 LS Contribution 416.99 15.07 6.28 6.28 Total: -1.00 -33.05 416.99 -7.99 -41.04 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -8.09 Total: 3.00 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: -1.59 Total: 9.05 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.36 Total: -59.23 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: 0.09 Total: -14.89 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.03 Total: 14.74 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.05 -7.99 -41.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075132464.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.081 kcal (2) G-P(sol) polarization free energy of solvation -33.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds