Wall clock time and date at job start Tue Mar 31 2020 05:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30836 * 125.89648 * 2 1 4 4 N 1.40083 * 108.20704 * 180.02562 * 3 2 1 5 5 C 1.46496 * 126.04282 * 179.97438 * 4 3 2 6 6 C 1.34951 * 107.92428 * 359.76344 * 4 3 2 7 7 C 1.50704 * 126.12949 * 180.24161 * 6 4 3 8 8 C 1.35313 * 107.74489 * 0.38555 * 6 4 3 9 9 C 1.50699 * 126.04269 * 179.87644 * 8 6 4 10 10 H 1.09006 * 110.42216 * 12.40492 * 9 8 6 11 11 C 1.54903 * 110.37594 * 250.09084 * 9 8 6 12 12 C 1.55137 * 101.65525 * 204.09746 * 11 9 8 13 13 C 1.54322 * 103.01919 * 35.65420 * 12 11 9 14 14 N 1.47441 * 107.23186 * 337.71263 * 13 12 11 15 15 C 1.46899 * 111.00167 * 236.74258 * 14 13 12 16 16 C 1.52993 * 109.47209 * 290.12482 * 15 14 13 17 17 C 1.50704 * 109.47148 * 180.02562 * 16 15 14 18 18 O 1.21295 * 119.99525 * 0.02562 * 17 16 15 19 19 N 1.34774 * 119.99866 * 180.02562 * 17 16 15 20 20 C 1.37106 * 119.99622 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00024 * 17.72286 * 20 19 17 22 22 C 1.38951 * 119.99602 * 197.71729 * 20 19 17 23 23 N 1.31411 * 120.00104 * 21.40346 * 22 20 19 24 24 Si 1.86797 * 119.99694 * 201.39770 * 22 20 19 25 25 H 1.48503 * 109.46881 * 90.00666 * 24 22 20 26 26 H 1.48503 * 109.47266 * 210.00157 * 24 22 20 27 27 H 1.48496 * 109.47284 * 330.00572 * 24 22 20 28 28 C 1.46502 * 120.00270 * 359.97438 * 19 17 16 29 29 C 1.47195 * 109.46747 * 84.23635 * 28 19 17 30 30 N 8.32901 * 57.67905 * 137.40436 * 2 1 3 31 31 H 1.09000 * 109.46575 * 269.96948 * 1 2 3 32 32 H 1.09000 * 109.46864 * 29.97469 * 1 2 3 33 33 H 1.09002 * 109.46659 * 149.97679 * 1 2 3 34 34 H 1.09003 * 109.46922 * 90.02557 * 5 4 3 35 35 H 1.08997 * 109.47724 * 210.02532 * 5 4 3 36 36 H 1.09004 * 109.46666 * 330.03252 * 5 4 3 37 37 H 1.09000 * 109.46605 * 270.17172 * 7 6 4 38 38 H 1.08995 * 109.46955 * 30.16931 * 7 6 4 39 39 H 1.09000 * 109.47064 * 150.17061 * 7 6 4 40 40 H 1.08999 * 110.99344 * 86.00516 * 11 9 8 41 41 H 1.09005 * 110.99078 * 322.18599 * 11 9 8 42 42 H 1.08997 * 110.71123 * 277.27062 * 12 11 9 43 43 H 1.09003 * 110.70624 * 154.03114 * 12 11 9 44 44 H 1.08996 * 109.89118 * 97.12081 * 13 12 11 45 45 H 1.09001 * 109.88913 * 218.14989 * 13 12 11 46 46 H 1.08998 * 109.47123 * 50.13224 * 15 14 13 47 47 H 1.09003 * 109.46804 * 170.12908 * 15 14 13 48 48 H 1.08998 * 109.47684 * 300.00399 * 16 15 14 49 49 H 1.09003 * 109.46890 * 60.00478 * 16 15 14 50 50 H 0.96998 * 120.00065 * 179.97438 * 23 22 20 51 51 H 1.08996 * 109.47130 * 204.23562 * 28 19 17 52 52 H 1.08996 * 109.46933 * 324.23600 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0006 5 6 4.7899 1.5008 -0.0013 6 6 3.6143 -0.7153 0.0044 7 6 4.8352 -1.5988 0.0108 8 6 2.3273 -1.1330 -0.0007 9 6 1.8600 -2.5657 -0.0005 10 1 2.6897 -3.2363 0.2237 11 6 1.2288 -2.9273 -1.3681 12 6 0.2968 -4.1057 -0.9813 13 6 -0.2073 -3.7044 0.4210 14 7 0.7690 -2.7513 0.9799 15 6 1.2929 -3.2280 2.2668 16 6 0.1908 -3.1537 3.3252 17 6 0.7285 -3.6422 4.6456 18 8 1.8802 -4.0129 4.7315 19 7 -0.0704 -3.6672 5.7308 20 6 0.4190 -4.1111 6.9321 21 1 1.4854 -4.1682 7.0929 22 6 -0.4571 -4.4875 7.9428 23 7 -1.6930 -4.8244 7.6494 24 14 0.1218 -4.5146 9.7186 25 1 -0.1241 -3.1883 10.3397 26 1 -0.6249 -5.5576 10.4668 27 1 1.5746 -4.8194 9.7610 28 6 -1.4613 -3.2189 5.6270 29 6 -2.2987 -4.3270 5.1398 30 7 -2.9461 -5.1814 4.7638 31 1 -0.3632 -0.0005 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3633 -0.8898 -0.5142 34 1 5.0836 1.7155 1.0262 35 1 5.6090 0.9984 -0.5158 36 1 4.5559 2.4335 -0.5147 37 1 5.1339 -1.8130 -1.0154 38 1 5.6490 -1.0902 0.5275 39 1 4.6055 -2.5322 0.5248 40 1 1.9913 -3.2492 -2.0773 41 1 0.6552 -2.0906 -1.7669 42 1 0.8555 -5.0406 -0.9370 43 1 -0.5348 -4.1852 -1.6815 44 1 -1.1853 -3.2299 0.3418 45 1 -0.2738 -4.5867 1.0576 46 1 1.6279 -4.2600 2.1628 47 1 2.1321 -2.6026 2.5715 48 1 -0.1442 -2.1217 3.4292 49 1 -0.6484 -3.7791 3.0205 50 1 -2.3045 -5.0875 8.3548 51 1 -1.8145 -2.9005 6.6078 52 1 -1.5226 -2.3833 4.9299 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075132464.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:39 Heat of formation + Delta-G solvation = 62.482183 kcal Electronic energy + Delta-G solvation = -33178.004920 eV Core-core repulsion = 28985.934181 eV Total energy + Delta-G solvation = -4192.070739 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.206 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.30215 -40.74390 -39.66390 -37.58843 -36.17820 -34.97246 -34.28676 -33.63999 -33.24868 -30.45457 -30.23928 -29.77536 -29.05829 -27.31491 -26.75217 -25.92582 -24.25582 -22.28703 -21.78288 -20.48212 -20.25109 -20.06964 -19.70427 -18.28937 -17.97107 -17.21707 -17.06873 -16.58291 -16.52580 -15.97440 -15.89134 -15.85664 -14.89979 -14.80121 -14.69034 -14.62566 -14.36594 -14.29613 -14.18790 -13.95468 -13.80543 -13.58388 -13.42293 -13.36894 -13.29575 -13.22967 -12.99418 -12.91566 -12.79677 -12.70474 -12.60114 -12.35174 -12.28950 -12.12532 -12.08765 -12.03903 -11.95348 -11.82187 -11.52133 -11.17907 -11.10484 -10.40441 -9.91102 -9.86097 -9.19308 -9.07608 -8.39863 -5.95431 0.98768 1.39897 1.47796 1.57724 1.74643 1.83475 1.87627 2.07683 2.27407 2.36208 2.88840 3.01019 3.34323 3.61818 3.72289 3.82351 3.82737 3.90318 4.06651 4.14114 4.18955 4.21235 4.34130 4.39497 4.42633 4.44892 4.54814 4.55506 4.64206 4.65590 4.70279 4.72839 4.80712 4.89396 4.91067 4.99346 5.01670 5.03303 5.06720 5.09528 5.10763 5.20247 5.28541 5.32692 5.40164 5.48243 5.49123 5.93192 6.04284 6.16028 6.18942 6.29396 6.41514 6.93048 7.02265 7.13446 7.37198 7.94627 8.63996 Molecular weight = 359.21amu Principal moments of inertia in cm(-1) A = 0.012039 B = 0.002745 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.146195 B =10196.269148 C =11274.979788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.094 3.906 3 N -0.344 5.344 4 N -0.384 5.384 5 C 0.095 3.905 6 C 0.079 3.921 7 C -0.090 4.090 8 C -0.233 4.233 9 C 0.154 3.846 10 H 0.052 0.948 11 C -0.109 4.109 12 C -0.136 4.136 13 C 0.035 3.965 14 N -0.515 5.515 15 C 0.093 3.907 16 C -0.113 4.113 17 C 0.450 3.550 18 O -0.620 6.620 19 N -0.456 5.456 20 C -0.342 4.342 21 H 0.080 0.920 22 C 0.006 3.994 23 N -0.892 5.892 24 Si 0.985 3.015 25 H -0.260 1.260 26 H -0.286 1.286 27 H -0.278 1.278 28 C 0.223 3.777 29 C 0.259 3.741 30 N -0.506 5.506 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.039 0.961 46 H 0.018 0.982 47 H 0.058 0.942 48 H 0.113 0.887 49 H 0.083 0.917 50 H 0.274 0.726 51 H 0.123 0.877 52 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.296 11.239 -18.729 23.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.071 4.071 3 N -0.167 5.167 4 N -0.166 5.166 5 C -0.045 4.045 6 C -0.049 4.049 7 C -0.148 4.148 8 C -0.245 4.245 9 C 0.045 3.955 10 H 0.070 0.930 11 C -0.147 4.147 12 C -0.174 4.174 13 C -0.092 4.092 14 N -0.239 5.239 15 C -0.036 4.036 16 C -0.153 4.153 17 C 0.240 3.760 18 O -0.505 6.505 19 N -0.176 5.176 20 C -0.470 4.470 21 H 0.098 0.902 22 C -0.196 4.196 23 N -0.530 5.530 24 Si 0.810 3.190 25 H -0.184 1.184 26 H -0.212 1.212 27 H -0.203 1.203 28 C 0.096 3.904 29 C -0.059 4.059 30 N -0.186 5.186 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.129 0.871 36 H 0.110 0.890 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.058 0.942 46 H 0.037 0.963 47 H 0.076 0.924 48 H 0.131 0.869 49 H 0.101 0.899 50 H 0.084 0.916 51 H 0.140 0.860 52 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.672 11.600 -19.015 23.252 hybrid contribution 0.862 -1.712 1.582 2.485 sum 7.535 9.889 -17.434 21.412 Atomic orbital electron populations 1.20128 0.85510 1.02716 1.03153 1.22444 0.97784 0.89731 0.97166 1.77224 0.87380 1.23713 1.28411 1.48546 1.05726 1.04538 1.57835 1.22072 0.83432 0.94979 1.04009 1.21300 0.97719 0.85004 1.00898 1.20544 0.92205 0.97677 1.04411 1.19581 0.91195 0.95643 1.18088 1.20636 0.92474 0.90572 0.91827 0.92981 1.22685 0.98758 0.97996 0.95260 1.22770 1.00156 0.98100 0.96386 1.22926 0.97120 0.94019 0.95157 1.63400 1.13726 1.44801 1.02011 1.21575 0.95714 0.97271 0.89061 1.21436 0.99339 1.03745 0.90771 1.21060 0.86598 0.82288 0.86016 1.90498 1.20383 1.53905 1.85758 1.43812 1.08873 1.56471 1.08424 1.19612 0.93601 1.44391 0.89378 0.90173 1.25862 0.95518 0.94679 1.03522 1.69939 1.06722 1.41777 1.34586 0.85046 0.77864 0.78474 0.77641 1.18439 1.21159 1.20333 1.19028 0.78594 0.88825 1.03949 1.29711 0.92536 0.94410 0.89238 1.80888 1.12044 1.10667 1.15024 0.90658 0.91763 0.89366 0.90526 0.87079 0.89005 0.88285 0.89716 0.90342 0.89876 0.90279 0.91750 0.89008 0.89308 0.94245 0.96339 0.92364 0.86863 0.89866 0.91573 0.85980 0.84664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.22 9.50 71.24 0.68 -0.54 16 2 C 0.09 2.48 7.09 43.10 0.31 2.79 16 3 N -0.34 -9.72 12.58 -47.38 -0.60 -10.31 16 4 N -0.38 -8.85 4.01 -356.03 -1.43 -10.27 16 5 C 0.10 1.28 11.09 127.77 1.42 2.70 16 6 C 0.08 1.77 6.93 41.41 0.29 2.05 16 7 C -0.09 -1.35 9.63 71.24 0.69 -0.67 16 8 C -0.23 -5.76 5.10 -20.14 -0.10 -5.86 16 9 C 0.15 3.49 2.48 44.64 0.11 3.60 16 10 H 0.05 1.25 6.53 -2.38 -0.02 1.23 16 11 C -0.11 -1.91 6.23 31.98 0.20 -1.71 16 12 C -0.14 -2.37 6.94 31.78 0.22 -2.15 16 13 C 0.04 0.79 6.20 86.65 0.54 1.33 16 14 N -0.52 -12.97 3.62 -864.99 -3.13 -16.09 16 15 C 0.09 2.99 3.83 86.30 0.33 3.32 16 16 C -0.11 -3.81 4.33 29.85 0.13 -3.68 16 17 C 0.45 20.50 7.57 87.66 0.66 21.16 16 18 O -0.62 -33.23 15.63 -3.08 -0.05 -33.28 16 19 N -0.46 -21.32 2.60 -645.42 -1.68 -23.00 16 20 C -0.34 -18.01 9.32 84.04 0.78 -17.23 16 21 H 0.08 4.58 7.39 -2.91 -0.02 4.56 16 22 C 0.01 0.32 4.87 84.93 0.41 0.73 16 23 N -0.89 -44.69 9.48 21.66 0.21 -44.49 16 24 Si 0.99 40.40 29.60 68.60 2.03 42.43 16 25 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 26 H -0.29 -11.68 7.11 99.48 0.71 -10.97 16 27 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 28 C 0.22 8.56 4.91 84.57 0.42 8.97 16 29 C 0.26 11.14 12.95 89.44 1.16 12.29 16 30 N -0.51 -23.55 18.54 20.00 0.37 -23.18 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.09 1.70 6.07 -2.39 -0.01 1.69 16 34 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.11 0.83 7.68 -2.39 -0.02 0.81 16 36 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 1.00 7.74 -2.39 -0.02 0.99 16 39 H 0.08 1.32 7.05 -2.39 -0.02 1.31 16 40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.08 1.39 6.65 -2.38 -0.02 1.37 16 42 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.04 1.03 6.92 -2.39 -0.02 1.02 16 46 H 0.02 0.66 7.92 -2.39 -0.02 0.64 16 47 H 0.06 2.09 8.03 -2.39 -0.02 2.07 16 48 H 0.11 3.27 7.42 -2.39 -0.02 3.25 16 49 H 0.08 2.76 6.51 -2.39 -0.02 2.74 16 50 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 51 H 0.12 4.84 6.46 -2.39 -0.02 4.83 16 52 H 0.14 3.78 6.68 -2.39 -0.02 3.77 16 Total: -1.00 -73.07 416.99 4.89 -68.17 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.94 Total: 22.90 kcal Atomic # 6 Polarization: 18.88 SS G_CDS: 8.23 Total: 27.11 kcal Atomic # 7 Polarization: -121.09 SS G_CDS: -6.25 Total: -127.34 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -0.05 Total: -33.28 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Total: -73.07 4.89 -68.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075132464.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.657 kcal (2) G-P(sol) polarization free energy of solvation -73.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds