Wall clock time and date at job start Tue Mar 31 2020 05:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.08002 * 119.99706 * 0.27353 * 7 2 1 9 9 C 1.50699 * 119.99783 * 180.27665 * 7 2 1 10 10 N 1.46506 * 109.46892 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00225 * 270.00048 * 10 9 7 12 12 C 1.50701 * 109.46920 * 90.00181 * 11 10 9 13 13 C 1.34513 * 125.79106 * 90.00029 * 12 11 10 14 14 C 1.41383 * 106.84286 * 180.02562 * 13 12 11 15 15 C 1.34510 * 106.83840 * 359.97438 * 14 13 12 16 16 O 1.34303 * 108.42358 * 359.73828 * 15 14 13 17 17 C 1.34777 * 119.99604 * 89.99901 * 10 9 7 18 18 O 1.21281 * 119.99934 * 180.02562 * 17 10 9 19 19 C 1.50702 * 120.00244 * 0.02562 * 17 10 9 20 20 N 1.46895 * 109.47365 * 179.97438 * 19 17 10 21 21 C 1.46900 * 111.00100 * 179.97438 * 20 19 17 22 22 H 1.09000 * 109.46589 * 325.00169 * 21 20 19 23 23 C 1.53155 * 109.46897 * 205.01005 * 21 20 19 24 24 C 1.53424 * 109.25929 * 170.81899 * 23 21 20 25 25 C 1.50926 * 108.19524 * 48.70310 * 24 23 21 26 26 N 1.30331 * 127.90010 * 163.99465 * 25 24 23 27 27 C 1.33473 * 109.72407 * 180.09822 * 26 25 24 28 28 N 1.30977 * 109.00434 * 359.97438 * 27 26 25 29 29 N 1.34677 * 124.05180 * 344.05155 * 25 24 23 30 30 C 1.46301 * 125.04750 * 359.86392 * 29 25 24 31 31 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 32 32 H 1.08992 * 109.47047 * 299.99662 * 9 7 2 33 33 H 1.09005 * 109.46894 * 60.00237 * 9 7 2 34 34 H 1.09001 * 109.46973 * 209.99564 * 11 10 9 35 35 H 1.08992 * 109.47116 * 330.00073 * 11 10 9 36 36 H 1.08005 * 126.58101 * 359.95975 * 13 12 11 37 37 H 1.08003 * 126.58220 * 179.97438 * 14 13 12 38 38 H 1.07999 * 125.79060 * 179.97438 * 15 14 13 39 39 H 1.08999 * 109.46992 * 299.99945 * 19 17 10 40 40 H 1.09001 * 109.47202 * 59.99277 * 19 17 10 41 41 H 1.00901 * 111.00103 * 303.95172 * 20 19 17 42 42 H 1.08998 * 109.50991 * 290.75626 * 23 21 20 43 43 H 1.09004 * 109.50885 * 50.88330 * 23 21 20 44 44 H 1.09001 * 109.71429 * 289.03316 * 24 23 21 45 45 H 1.09003 * 109.76253 * 168.40588 * 24 23 21 46 46 H 1.07997 * 125.49759 * 180.02562 * 27 26 25 47 47 H 1.09001 * 109.58395 * 223.20769 * 30 29 25 48 48 H 1.08993 * 109.58306 * 102.78227 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 1.4644 -2.1294 0.0058 9 6 3.5114 -1.1942 0.0121 10 7 3.9997 -2.5755 0.0181 11 6 4.2385 -3.2625 1.2897 12 6 2.9808 -3.9716 1.7215 13 6 2.6415 -5.2342 1.4051 14 6 1.3917 -5.4878 2.0156 15 6 1.0424 -4.3651 2.6690 16 8 2.0114 -3.4522 2.4924 17 6 4.2291 -3.2141 -1.1464 18 8 4.6328 -4.3577 -1.1415 19 6 3.9840 -2.5072 -2.4546 20 7 4.3072 -3.4102 -3.5672 21 6 4.0791 -2.7536 -4.8614 22 1 3.2185 -2.0891 -4.7849 23 6 3.8108 -3.8152 -5.9322 24 6 3.3490 -3.1265 -7.2230 25 6 4.3068 -1.9999 -7.5248 26 7 4.4561 -1.3551 -8.6475 27 6 5.4077 -0.4289 -8.5119 28 7 5.8771 -0.4754 -7.2901 29 7 5.1754 -1.4889 -6.6314 30 6 5.3199 -1.9402 -5.2472 31 1 -0.4849 0.8401 -0.0004 32 1 3.8785 -0.6826 -0.8776 33 1 3.8710 -0.6782 0.9024 34 1 5.0409 -3.9896 1.1648 35 1 4.5234 -2.5338 2.0485 36 1 3.2134 -5.9220 0.7999 37 1 0.8261 -6.4065 1.9668 38 1 0.1379 -4.2232 3.2419 39 1 2.9364 -2.2128 -2.5177 40 1 4.6147 -1.6201 -2.5120 41 1 5.2552 -3.7481 -3.4950 42 1 4.7251 -4.3761 -6.1259 43 1 3.0330 -4.4950 -5.5840 44 1 2.3434 -2.7281 -7.0877 45 1 3.3531 -3.8428 -8.0447 46 1 5.7368 0.2498 -9.2848 47 1 5.4097 -1.0762 -4.5887 48 1 6.2087 -2.5647 -5.1575 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075603393.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:15 Heat of formation + Delta-G solvation = 85.294804 kcal Electronic energy + Delta-G solvation = -32392.872221 eV Core-core repulsion = 28065.957617 eV Total energy + Delta-G solvation = -4326.914604 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.44096 -41.92815 -39.50185 -38.00133 -35.40332 -34.19749 -33.33046 -32.74541 -32.32360 -30.78179 -30.25821 -29.04798 -27.92598 -26.57701 -24.90658 -23.97646 -22.63170 -22.26835 -22.02748 -21.11312 -20.20077 -19.81771 -18.60213 -17.32878 -17.10453 -16.88778 -16.55130 -16.27722 -16.06656 -15.44633 -15.20446 -15.04974 -14.87961 -14.54946 -14.37804 -14.30413 -14.06410 -13.62512 -13.39140 -13.15308 -12.72649 -12.48520 -12.33712 -12.29990 -12.27815 -12.20364 -11.98271 -11.96568 -11.77587 -11.56252 -11.30457 -11.13663 -10.92938 -10.79569 -10.37767 -10.18530 -9.85954 -9.69955 -9.60610 -9.43099 -9.30036 -8.80222 -8.59947 -8.14054 -7.84622 -6.26085 -4.27669 1.48791 2.10354 2.24794 2.80411 3.01492 3.09783 3.16118 3.17413 3.21755 3.53183 3.66028 3.84216 4.01846 4.09321 4.19874 4.37749 4.67436 4.71462 4.87805 4.97590 5.00223 5.03766 5.06669 5.21289 5.26490 5.32635 5.44617 5.45307 5.57098 5.58832 5.72055 5.76993 5.83605 5.86921 5.92883 6.17089 6.25637 6.28847 6.31136 6.44494 6.46345 6.57136 6.64714 6.73591 7.04744 7.08340 7.20172 7.35329 7.74421 7.93175 7.97799 8.30996 8.66503 8.83976 9.32123 10.86509 Molecular weight = 359.17amu Principal moments of inertia in cm(-1) A = 0.010163 B = 0.002978 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.522008 B = 9400.787356 C =10974.848972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.079 3.921 3 Si 0.866 3.134 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.535 4.535 8 H 0.081 0.919 9 C 0.206 3.794 10 N -0.588 5.588 11 C 0.202 3.798 12 C -0.013 4.013 13 C -0.199 4.199 14 C -0.227 4.227 15 C -0.035 4.035 16 O -0.155 6.155 17 C 0.524 3.476 18 O -0.550 6.550 19 C 0.039 3.961 20 N -0.650 5.650 21 C 0.075 3.925 22 H 0.099 0.901 23 C -0.115 4.115 24 C -0.042 4.042 25 C 0.280 3.720 26 N -0.544 5.544 27 C 0.193 3.807 28 N -0.321 5.321 29 N -0.369 5.369 30 C 0.096 3.904 31 H 0.266 0.734 32 H 0.029 0.971 33 H 0.036 0.964 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.194 0.806 39 H 0.122 0.878 40 H 0.058 0.942 41 H 0.350 0.650 42 H 0.072 0.928 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.106 0.894 46 H 0.216 0.784 47 H 0.095 0.905 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.347 -5.916 -6.797 12.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.125 4.125 3 Si 0.693 3.307 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.574 4.574 8 H 0.099 0.901 9 C 0.085 3.915 10 N -0.320 5.320 11 C 0.079 3.921 12 C -0.065 4.065 13 C -0.219 4.219 14 C -0.246 4.246 15 C -0.104 4.104 16 O -0.049 6.049 17 C 0.312 3.688 18 O -0.429 6.429 19 C -0.093 4.093 20 N -0.282 5.282 21 C -0.037 4.037 22 H 0.117 0.883 23 C -0.153 4.153 24 C -0.082 4.082 25 C 0.003 3.997 26 N -0.272 5.272 27 C -0.110 4.110 28 N -0.149 5.149 29 N -0.161 5.161 30 C -0.028 4.028 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.123 0.877 35 H 0.106 0.894 36 H 0.161 0.839 37 H 0.157 0.843 38 H 0.211 0.789 39 H 0.140 0.860 40 H 0.075 0.925 41 H 0.170 0.830 42 H 0.090 0.910 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.233 0.767 47 H 0.113 0.887 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.224 -5.967 -6.561 12.095 hybrid contribution 0.721 1.609 0.078 1.765 sum 8.945 -4.358 -6.483 11.876 Atomic orbital electron populations 1.69886 1.06164 1.27064 1.49286 1.24844 0.94670 0.98593 0.94348 0.87023 0.80547 0.84405 0.78765 1.20061 1.20807 1.18937 1.21299 0.88681 0.95082 1.52312 0.90134 1.19918 0.96480 0.77436 0.97637 1.48012 1.64334 1.15591 1.04037 1.19632 0.90187 0.96453 0.85861 1.22757 0.92957 0.93224 0.97594 1.21539 0.98164 0.96980 1.05256 1.21711 0.98561 1.00013 1.04320 1.23898 0.94065 0.88026 1.04371 1.84107 1.26027 1.40065 1.54672 1.20214 0.76962 0.86278 0.85336 1.90621 1.47212 1.17502 1.87518 1.22008 1.04943 0.93538 0.88766 1.60321 1.32191 1.36561 0.99093 1.22029 0.96157 0.94957 0.90529 0.88337 1.21737 1.03728 0.97839 0.92031 1.20447 0.96242 0.92318 0.99175 1.24430 0.93155 0.96752 0.85339 1.70306 1.21366 1.11221 1.24327 1.26073 0.93112 0.97593 0.94186 1.77968 1.20197 1.08407 1.08312 1.50164 1.28223 1.26119 1.11557 1.22915 1.01364 1.00447 0.78115 0.92400 0.95301 0.94643 0.87738 0.89354 0.83911 0.84273 0.78895 0.85986 0.92455 0.83014 0.90955 0.87960 0.87845 0.87559 0.76735 0.88660 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.08 13.96 55.43 0.77 -24.30 16 2 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.87 19.15 27.47 -169.99 -4.67 14.48 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.26 -5.50 6.54 56.52 0.37 -5.13 16 7 C -0.54 -13.38 9.84 -34.44 -0.34 -13.72 16 8 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 9 C 0.21 4.20 4.08 -5.19 -0.02 4.17 16 10 N -0.59 -10.85 2.44 -176.43 -0.43 -11.28 16 11 C 0.20 3.41 5.98 -5.19 -0.03 3.38 16 12 C -0.01 -0.25 6.90 -35.62 -0.25 -0.50 16 13 C -0.20 -3.61 10.81 -39.70 -0.43 -4.04 16 14 C -0.23 -3.80 10.91 -39.70 -0.43 -4.23 16 15 C -0.03 -0.59 12.09 29.41 0.36 -0.24 16 16 O -0.15 -3.10 10.65 5.70 0.06 -3.04 16 17 C 0.52 9.29 7.71 -10.98 -0.08 9.20 16 18 O -0.55 -10.46 15.78 5.56 0.09 -10.37 16 19 C 0.04 0.58 4.52 -4.98 -0.02 0.56 16 20 N -0.65 -8.04 5.87 -107.75 -0.63 -8.67 16 21 C 0.08 0.78 2.49 -67.48 -0.17 0.61 16 22 H 0.10 1.13 7.78 -51.93 -0.40 0.72 16 23 C -0.11 -0.99 5.57 -26.43 -0.15 -1.13 16 24 C -0.04 -0.36 6.33 -27.55 -0.17 -0.53 16 25 C 0.28 3.38 7.72 -155.78 -1.20 2.18 16 26 N -0.54 -7.25 11.18 -11.83 -0.13 -7.38 16 27 C 0.19 2.38 13.04 -91.39 -1.19 1.18 16 28 N -0.32 -4.47 12.74 29.38 0.37 -4.09 16 29 N -0.37 -4.67 4.04 -58.30 -0.24 -4.91 16 30 C 0.10 1.01 6.57 -4.00 -0.03 0.99 16 31 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.03 0.55 5.87 -51.93 -0.30 0.25 16 33 H 0.04 0.72 6.95 -51.93 -0.36 0.36 16 34 H 0.10 1.59 7.42 -51.93 -0.39 1.20 16 35 H 0.09 1.34 7.89 -51.93 -0.41 0.93 16 36 H 0.14 2.51 8.06 -52.48 -0.42 2.08 16 37 H 0.14 1.94 8.06 -52.48 -0.42 1.52 16 38 H 0.19 2.61 8.06 -52.49 -0.42 2.19 16 39 H 0.12 2.10 7.92 -51.93 -0.41 1.69 16 40 H 0.06 0.77 6.92 -51.93 -0.36 0.41 16 41 H 0.35 4.04 8.05 -39.29 -0.32 3.72 16 42 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 43 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.22 1.77 8.06 -52.49 -0.42 1.35 16 47 H 0.10 1.04 7.75 -51.93 -0.40 0.63 16 48 H 0.09 0.83 7.95 -51.93 -0.41 0.41 16 LS Contribution 400.55 15.07 6.04 6.04 Total: -1.00 -33.13 400.55 -9.76 -42.89 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -6.74 Total: 10.78 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -4.26 Total: -0.15 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: -0.28 Total: -60.63 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.15 Total: -13.41 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.67 Total: 14.48 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.13 -9.76 -42.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075603393.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.186 kcal (2) G-P(sol) polarization free energy of solvation -33.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds