Wall clock time and date at job start Tue Mar 31 2020 05:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.08002 * 119.99706 * 0.27353 * 7 2 1 9 9 C 1.50699 * 119.99783 * 180.27665 * 7 2 1 10 10 N 1.46506 * 109.46892 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00225 * 270.00048 * 10 9 7 12 12 C 1.50701 * 109.46920 * 90.00181 * 11 10 9 13 13 C 1.34513 * 125.79106 * 90.00029 * 12 11 10 14 14 C 1.41383 * 106.84286 * 180.02562 * 13 12 11 15 15 C 1.34510 * 106.83840 * 359.97438 * 14 13 12 16 16 O 1.34303 * 108.42358 * 359.73828 * 15 14 13 17 17 C 1.34777 * 119.99604 * 89.99901 * 10 9 7 18 18 O 1.21281 * 119.99934 * 180.02562 * 17 10 9 19 19 C 1.50702 * 120.00244 * 0.02562 * 17 10 9 20 20 N 1.46895 * 109.47365 * 179.97438 * 19 17 10 21 21 C 1.46900 * 111.00100 * 179.97438 * 20 19 17 22 22 H 1.09000 * 109.46589 * 325.00169 * 21 20 19 23 23 C 1.53155 * 109.46897 * 205.01005 * 21 20 19 24 24 C 1.53424 * 109.25929 * 170.81899 * 23 21 20 25 25 C 1.50926 * 108.19524 * 48.70310 * 24 23 21 26 26 N 1.30331 * 127.90010 * 163.99465 * 25 24 23 27 27 C 1.33473 * 109.72407 * 180.09822 * 26 25 24 28 28 N 1.30977 * 109.00434 * 359.97438 * 27 26 25 29 29 N 1.34677 * 124.05180 * 344.05155 * 25 24 23 30 30 C 1.46301 * 125.04750 * 359.86392 * 29 25 24 31 31 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 32 32 H 1.08992 * 109.47047 * 299.99662 * 9 7 2 33 33 H 1.09005 * 109.46894 * 60.00237 * 9 7 2 34 34 H 1.09001 * 109.46973 * 209.99564 * 11 10 9 35 35 H 1.08992 * 109.47116 * 330.00073 * 11 10 9 36 36 H 1.08005 * 126.58101 * 359.95975 * 13 12 11 37 37 H 1.08003 * 126.58220 * 179.97438 * 14 13 12 38 38 H 1.07999 * 125.79060 * 179.97438 * 15 14 13 39 39 H 1.08999 * 109.46992 * 299.99945 * 19 17 10 40 40 H 1.09001 * 109.47202 * 59.99277 * 19 17 10 41 41 H 1.00901 * 111.00103 * 303.95172 * 20 19 17 42 42 H 1.08998 * 109.50991 * 290.75626 * 23 21 20 43 43 H 1.09004 * 109.50885 * 50.88330 * 23 21 20 44 44 H 1.09001 * 109.71429 * 289.03316 * 24 23 21 45 45 H 1.09003 * 109.76253 * 168.40588 * 24 23 21 46 46 H 1.07997 * 125.49759 * 180.02562 * 27 26 25 47 47 H 1.09001 * 109.58395 * 223.20769 * 30 29 25 48 48 H 1.08993 * 109.58306 * 102.78227 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 1.4644 -2.1294 0.0058 9 6 3.5114 -1.1942 0.0121 10 7 3.9997 -2.5755 0.0181 11 6 4.2385 -3.2625 1.2897 12 6 2.9808 -3.9716 1.7215 13 6 2.6415 -5.2342 1.4051 14 6 1.3917 -5.4878 2.0156 15 6 1.0424 -4.3651 2.6690 16 8 2.0114 -3.4522 2.4924 17 6 4.2291 -3.2141 -1.1464 18 8 4.6328 -4.3577 -1.1415 19 6 3.9840 -2.5072 -2.4546 20 7 4.3072 -3.4102 -3.5672 21 6 4.0791 -2.7536 -4.8614 22 1 3.2185 -2.0891 -4.7849 23 6 3.8108 -3.8152 -5.9322 24 6 3.3490 -3.1265 -7.2230 25 6 4.3068 -1.9999 -7.5248 26 7 4.4561 -1.3551 -8.6475 27 6 5.4077 -0.4289 -8.5119 28 7 5.8771 -0.4754 -7.2901 29 7 5.1754 -1.4889 -6.6314 30 6 5.3199 -1.9402 -5.2472 31 1 -0.4849 0.8401 -0.0004 32 1 3.8785 -0.6826 -0.8776 33 1 3.8710 -0.6782 0.9024 34 1 5.0409 -3.9896 1.1648 35 1 4.5234 -2.5338 2.0485 36 1 3.2134 -5.9220 0.7999 37 1 0.8261 -6.4065 1.9668 38 1 0.1379 -4.2232 3.2419 39 1 2.9364 -2.2128 -2.5177 40 1 4.6147 -1.6201 -2.5120 41 1 5.2552 -3.7481 -3.4950 42 1 4.7251 -4.3761 -6.1259 43 1 3.0330 -4.4950 -5.5840 44 1 2.3434 -2.7281 -7.0877 45 1 3.3531 -3.8428 -8.0447 46 1 5.7368 0.2498 -9.2848 47 1 5.4097 -1.0762 -4.5887 48 1 6.2087 -2.5647 -5.1575 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075603393.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:13 Heat of formation + Delta-G solvation = 64.252831 kcal Electronic energy + Delta-G solvation = -32393.784669 eV Core-core repulsion = 28065.957617 eV Total energy + Delta-G solvation = -4327.827052 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.174 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.34842 -43.33439 -40.86446 -38.96125 -36.90064 -35.22747 -34.58082 -34.19942 -33.79000 -32.13192 -31.21691 -30.09307 -29.62315 -27.76227 -26.04059 -24.97191 -24.32329 -23.21529 -22.91929 -22.51710 -21.56242 -20.78734 -19.92789 -19.14037 -18.35062 -18.02396 -17.86453 -17.45677 -17.19999 -16.72250 -16.47298 -16.32536 -15.98354 -15.74639 -15.48505 -15.34641 -15.15700 -14.88278 -14.62813 -14.35505 -14.28062 -13.88719 -13.64048 -13.57600 -13.55216 -13.41762 -13.20233 -13.14369 -13.04949 -12.66993 -12.56153 -12.34587 -12.15869 -12.03752 -11.91332 -11.67504 -11.13841 -10.86924 -10.77916 -10.76144 -10.69327 -10.51105 -9.69300 -9.58843 -9.26838 -8.25489 -6.30766 0.57910 0.83564 1.24447 1.37098 1.40753 1.47977 1.63102 1.78574 1.89262 2.26866 2.32223 2.34807 2.97319 3.07606 3.08600 3.17645 3.58090 3.66888 3.87205 3.89510 3.90893 4.06559 4.14935 4.17399 4.23400 4.26376 4.34278 4.40222 4.51149 4.54421 4.54943 4.64148 4.69924 4.82768 4.89452 4.97486 5.06989 5.08134 5.14068 5.29115 5.29842 5.41042 5.44147 5.52980 5.67329 5.70301 5.82697 6.19113 6.26108 6.35745 6.57925 6.76517 7.06069 7.22841 7.35022 8.90874 Molecular weight = 359.17amu Principal moments of inertia in cm(-1) A = 0.010163 B = 0.002978 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.522008 B = 9400.787356 C =10974.848972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.236 1.236 7 C -0.523 4.523 8 H 0.029 0.971 9 C 0.213 3.787 10 N -0.593 5.593 11 C 0.197 3.803 12 C -0.032 4.032 13 C -0.210 4.210 14 C -0.230 4.230 15 C -0.048 4.048 16 O -0.183 6.183 17 C 0.520 3.480 18 O -0.563 6.563 19 C 0.047 3.953 20 N -0.652 5.652 21 C 0.082 3.918 22 H 0.086 0.914 23 C -0.106 4.106 24 C -0.037 4.037 25 C 0.275 3.725 26 N -0.568 5.568 27 C 0.191 3.809 28 N -0.353 5.353 29 N -0.378 5.378 30 C 0.098 3.902 31 H 0.264 0.736 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.121 0.879 35 H 0.105 0.895 36 H 0.146 0.854 37 H 0.167 0.833 38 H 0.223 0.777 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.357 0.643 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.110 0.890 45 H 0.126 0.874 46 H 0.246 0.754 47 H 0.091 0.909 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.992 -5.820 -7.431 13.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.177 4.177 3 Si 0.755 3.245 4 H -0.191 1.191 5 H -0.218 1.218 6 H -0.159 1.159 7 C -0.561 4.561 8 H 0.048 0.952 9 C 0.091 3.909 10 N -0.324 5.324 11 C 0.074 3.926 12 C -0.084 4.084 13 C -0.230 4.230 14 C -0.249 4.249 15 C -0.116 4.116 16 O -0.078 6.078 17 C 0.309 3.691 18 O -0.442 6.442 19 C -0.085 4.085 20 N -0.284 5.284 21 C -0.030 4.030 22 H 0.104 0.896 23 C -0.145 4.145 24 C -0.077 4.077 25 C -0.001 4.001 26 N -0.296 5.296 27 C -0.111 4.111 28 N -0.181 5.181 29 N -0.169 5.169 30 C -0.026 4.026 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.138 0.862 35 H 0.123 0.877 36 H 0.163 0.837 37 H 0.184 0.816 38 H 0.239 0.761 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.178 0.822 42 H 0.100 0.900 43 H 0.124 0.876 44 H 0.128 0.872 45 H 0.144 0.856 46 H 0.262 0.738 47 H 0.109 0.891 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.906 -5.903 -7.192 13.591 hybrid contribution 0.142 1.443 0.263 1.474 sum 10.049 -4.460 -6.929 12.995 Atomic orbital electron populations 1.70058 1.08327 1.27900 1.51849 1.25678 0.95285 1.02540 0.94152 0.85971 0.80085 0.79139 0.79350 1.19070 1.21796 1.15907 1.21385 0.91082 0.92892 1.50781 0.95250 1.19760 0.93253 0.78959 0.98935 1.48025 1.64265 1.15110 1.04952 1.19887 0.89820 0.97211 0.85695 1.23174 0.93515 0.93776 0.97905 1.21740 0.98873 0.97021 1.05403 1.22080 0.98250 1.00992 1.03577 1.24602 0.94494 0.87803 1.04701 1.84080 1.26968 1.41377 1.55375 1.20672 0.76312 0.86207 0.85929 1.90606 1.47797 1.18037 1.87785 1.21841 1.03793 0.94489 0.88375 1.60294 1.32786 1.36262 0.99059 1.21980 0.95667 0.95300 0.90025 0.89584 1.21679 1.04302 0.97211 0.91280 1.20590 0.95667 0.91721 0.99702 1.25044 0.93076 0.96963 0.85037 1.70333 1.22148 1.12032 1.25135 1.26745 0.92395 0.97493 0.94432 1.77910 1.21490 1.09538 1.09162 1.50278 1.28386 1.26116 1.12098 1.22947 1.01839 1.00461 0.77345 0.92649 0.93028 0.93564 0.86153 0.87696 0.83660 0.81573 0.76061 0.88448 0.90451 0.82200 0.90008 0.87648 0.87175 0.85566 0.73768 0.89079 0.87843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.78 13.96 21.45 0.30 -54.48 16 2 C 0.02 1.16 5.47 84.66 0.46 1.62 16 3 Si 0.93 38.67 27.47 68.60 1.88 40.56 16 4 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 5 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.24 -8.65 6.54 99.48 0.65 -8.00 16 7 C -0.52 -26.39 9.84 25.60 0.25 -26.14 16 8 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 9 C 0.21 8.34 4.08 85.63 0.35 8.69 16 10 N -0.59 -21.26 2.44 -830.50 -2.03 -23.29 16 11 C 0.20 6.47 5.98 85.63 0.51 6.98 16 12 C -0.03 -1.22 6.90 24.83 0.17 -1.05 16 13 C -0.21 -7.60 10.81 22.19 0.24 -7.36 16 14 C -0.23 -7.61 10.91 22.19 0.24 -7.36 16 15 C -0.05 -1.65 12.09 66.97 0.81 -0.84 16 16 O -0.18 -7.43 10.65 -2.51 -0.03 -7.46 16 17 C 0.52 17.92 7.71 87.66 0.68 18.60 16 18 O -0.56 -20.82 15.78 -3.03 -0.05 -20.87 16 19 C 0.05 1.35 4.52 85.56 0.39 1.74 16 20 N -0.65 -15.23 5.87 -494.80 -2.91 -18.13 16 21 C 0.08 1.59 2.49 45.07 0.11 1.70 16 22 H 0.09 1.91 7.78 -2.39 -0.02 1.89 16 23 C -0.11 -1.62 5.57 30.79 0.17 -1.45 16 24 C -0.04 -0.57 6.33 30.06 0.19 -0.38 16 25 C 0.27 6.25 7.72 138.37 1.07 7.32 16 26 N -0.57 -14.39 11.18 -191.34 -2.14 -16.53 16 27 C 0.19 4.47 13.04 180.62 2.35 6.83 16 28 N -0.35 -9.44 12.74 -60.96 -0.78 -10.22 16 29 N -0.38 -9.06 4.04 -338.35 -1.37 -10.43 16 30 C 0.10 1.91 6.57 86.52 0.57 2.48 16 31 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 32 H 0.05 1.82 5.87 -2.39 -0.01 1.81 16 33 H 0.05 1.75 6.95 -2.38 -0.02 1.73 16 34 H 0.12 3.52 7.42 -2.39 -0.02 3.50 16 35 H 0.10 3.03 7.89 -2.39 -0.02 3.01 16 36 H 0.15 5.08 8.06 -2.91 -0.02 5.05 16 37 H 0.17 4.41 8.06 -2.91 -0.02 4.38 16 38 H 0.22 5.88 8.06 -2.91 -0.02 5.85 16 39 H 0.10 3.37 7.92 -2.39 -0.02 3.35 16 40 H 0.08 1.91 6.92 -2.39 -0.02 1.89 16 41 H 0.36 7.58 8.05 -89.69 -0.72 6.86 16 42 H 0.08 1.13 8.12 -2.39 -0.02 1.11 16 43 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.25 3.62 8.06 -2.91 -0.02 3.60 16 47 H 0.09 1.85 7.75 -2.39 -0.02 1.83 16 48 H 0.10 1.71 7.95 -2.39 -0.02 1.69 16 Total: -1.00 -73.23 400.55 1.68 -71.55 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: 0.22 Total: 37.93 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 8.57 Total: 11.37 kcal Atomic # 7 Polarization: -124.17 SS G_CDS: -8.92 Total: -133.09 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.07 Total: -28.32 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 1.88 Total: 40.56 kcal Total: -73.23 1.68 -71.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075603393.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.806 kcal (2) G-P(sol) polarization free energy of solvation -73.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds