Wall clock time and date at job start Tue Mar 31 2020 05:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00197 * 2 1 4 4 H 1.48497 * 109.47178 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46832 * 299.99546 * 3 2 1 6 6 H 1.48497 * 109.47411 * 59.99691 * 3 2 1 7 7 C 1.37882 * 119.99597 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99549 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00031 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.47094 * 179.97438 * 9 7 2 11 11 C 1.46503 * 120.00063 * 269.99992 * 10 9 7 12 12 C 1.50701 * 109.46798 * 269.99817 * 11 10 9 13 13 C 1.34516 * 125.78710 * 89.71739 * 12 11 10 14 14 C 1.41387 * 106.83747 * 179.88654 * 13 12 11 15 15 C 1.34515 * 106.83750 * 0.37072 * 14 13 12 16 16 O 1.34295 * 108.42383 * 359.77313 * 15 14 13 17 17 C 1.34780 * 119.99756 * 89.99392 * 10 9 7 18 18 O 1.21283 * 119.99185 * 180.02562 * 17 10 9 19 19 C 1.50694 * 120.00037 * 0.02562 * 17 10 9 20 20 N 1.46899 * 109.46926 * 179.97438 * 19 17 10 21 21 C 1.46896 * 111.00269 * 179.97438 * 20 19 17 22 22 H 1.09005 * 109.46317 * 35.00591 * 21 20 19 23 23 C 1.53166 * 109.47203 * 154.99878 * 21 20 19 24 24 C 1.53427 * 109.25342 * 189.19258 * 23 21 20 25 25 C 1.50927 * 108.19967 * 311.31166 * 24 23 21 26 26 N 1.30333 * 127.90375 * 195.92131 * 25 24 23 27 27 C 1.33467 * 109.72833 * 179.91715 * 26 25 24 28 28 N 1.30978 * 109.00230 * 0.03154 * 27 26 25 29 29 N 1.34675 * 124.05367 * 15.92008 * 25 24 23 30 30 C 1.46295 * 125.04803 * 0.15970 * 29 25 24 31 31 H 0.96998 * 119.99618 * 0.02562 * 1 2 3 32 32 H 1.08993 * 109.47589 * 59.99740 * 9 7 2 33 33 H 1.09000 * 109.47101 * 299.99142 * 9 7 2 34 34 H 1.08998 * 109.46977 * 29.99535 * 11 10 9 35 35 H 1.09002 * 109.47194 * 149.99382 * 11 10 9 36 36 H 1.07996 * 126.58207 * 0.02562 * 13 12 11 37 37 H 1.07995 * 126.57636 * 180.11739 * 14 13 12 38 38 H 1.08005 * 125.78468 * 179.78654 * 15 14 13 39 39 H 1.08989 * 109.47415 * 59.99655 * 19 17 10 40 40 H 1.09000 * 109.47199 * 299.99212 * 19 17 10 41 41 H 1.00902 * 111.00221 * 56.04379 * 20 19 17 42 42 H 1.09004 * 109.50104 * 309.12390 * 23 21 20 43 43 H 1.08996 * 109.50657 * 69.21317 * 23 21 20 44 44 H 1.09002 * 109.72150 * 70.98651 * 24 23 21 45 45 H 1.08998 * 109.71926 * 191.63553 * 24 23 21 46 46 H 1.08001 * 125.50355 * 180.02562 * 27 26 25 47 47 H 1.09000 * 109.58256 * 257.23039 * 30 29 25 48 48 H 1.09000 * 109.59141 * 136.80336 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 2.6789 -4.1696 -1.2682 12 6 1.7621 -5.2838 -1.7031 13 6 0.6665 -5.1463 -2.4714 14 6 0.1141 -6.4379 -2.6318 15 6 0.9006 -7.2860 -1.9452 16 8 1.8971 -6.5815 -1.3848 17 6 2.6409 -4.1249 1.1678 18 8 3.4293 -5.0465 1.1677 19 6 2.1509 -3.5524 2.4728 20 7 2.7709 -4.2783 3.5894 21 6 2.3160 -3.7459 4.8807 22 1 1.2746 -3.4346 4.7987 23 6 2.4412 -4.8321 5.9534 24 6 1.7563 -4.3536 7.2402 25 6 2.2440 -2.9577 7.5427 26 7 2.1448 -2.3003 8.6637 27 6 2.7012 -1.0945 8.5297 28 7 3.1636 -0.9714 7.3104 29 7 2.8762 -2.1701 6.6518 30 6 3.1804 -2.5411 5.2698 31 1 -0.4849 0.8401 -0.0004 32 1 0.6246 -2.5571 -0.8896 33 1 0.6241 -2.5567 0.8904 34 1 2.6866 -3.3880 -2.0279 35 1 3.6884 -4.5596 -1.1379 36 1 0.2837 -4.2263 -2.8878 37 1 -0.7718 -6.6936 -3.1940 38 1 0.7553 -8.3528 -1.8594 39 1 1.0674 -3.6547 2.5304 40 1 2.4199 -2.4977 2.5307 41 1 3.7774 -4.2532 3.5226 42 1 1.9609 -5.7460 5.6036 43 1 3.4948 -5.0277 6.1521 44 1 0.6754 -4.3430 7.0995 45 1 2.0140 -5.0197 8.0635 46 1 2.7604 -0.3417 9.3018 47 1 4.2345 -2.8054 5.1860 48 1 2.9580 -1.7032 4.6090 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075603395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:19 Heat of formation + Delta-G solvation = 76.908886 kcal Electronic energy + Delta-G solvation = -32135.531454 eV Core-core repulsion = 27808.253209 eV Total energy + Delta-G solvation = -4327.278244 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.174 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.37617 -42.21613 -39.38175 -37.92592 -35.33097 -34.12408 -33.26581 -32.90430 -32.56298 -30.74681 -30.21393 -28.98608 -27.43336 -26.53152 -24.89073 -23.97290 -23.00553 -22.22724 -21.95913 -21.38345 -20.36800 -19.79535 -18.58107 -17.24072 -17.01478 -16.72387 -16.47190 -16.20577 -16.10627 -15.52527 -15.21397 -14.99786 -14.80685 -14.62977 -14.43213 -14.25051 -14.11862 -13.86594 -13.30547 -12.82309 -12.73517 -12.51806 -12.45874 -12.43319 -12.26741 -12.20144 -11.96972 -11.83527 -11.57158 -11.36711 -11.25540 -11.09797 -11.03022 -10.86886 -10.32807 -10.12245 -9.93186 -9.78442 -9.61974 -9.54322 -9.30047 -8.71002 -8.55388 -8.22376 -7.96475 -6.32664 -4.41496 1.56083 1.98303 2.19145 2.85594 2.86384 3.12401 3.12949 3.22762 3.24933 3.43069 3.60650 3.88349 4.09739 4.14457 4.24991 4.44483 4.73286 4.77902 4.94532 5.00810 5.02378 5.03880 5.15384 5.15777 5.31390 5.31611 5.35413 5.38312 5.59886 5.66880 5.71584 5.77470 5.83824 5.91352 5.97977 6.07612 6.23433 6.23746 6.35984 6.38341 6.53836 6.62784 6.77564 6.80198 7.03586 7.25381 7.32104 7.48292 7.61600 7.88633 8.04204 8.12292 8.63216 8.83030 9.27910 10.73877 Molecular weight = 359.17amu Principal moments of inertia in cm(-1) A = 0.007922 B = 0.003208 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3533.620039 B = 8724.974799 C =11518.384867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.237 3.763 10 N -0.592 5.592 11 C 0.198 3.802 12 C -0.016 4.016 13 C -0.202 4.202 14 C -0.217 4.217 15 C -0.051 4.051 16 O -0.166 6.166 17 C 0.519 3.481 18 O -0.552 6.552 19 C 0.041 3.959 20 N -0.654 5.654 21 C 0.077 3.923 22 H 0.096 0.904 23 C -0.115 4.115 24 C -0.040 4.040 25 C 0.276 3.724 26 N -0.545 5.545 27 C 0.191 3.809 28 N -0.318 5.318 29 N -0.367 5.367 30 C 0.094 3.906 31 H 0.266 0.734 32 H 0.039 0.961 33 H 0.038 0.962 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.196 0.804 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.352 0.648 42 H 0.100 0.900 43 H 0.072 0.928 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.216 0.784 47 H 0.089 0.911 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.557 -9.594 6.467 11.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.118 3.882 10 N -0.324 5.324 11 C 0.074 3.926 12 C -0.068 4.068 13 C -0.223 4.223 14 C -0.237 4.237 15 C -0.120 4.120 16 O -0.061 6.061 17 C 0.307 3.693 18 O -0.431 6.431 19 C -0.091 4.091 20 N -0.285 5.285 21 C -0.035 4.035 22 H 0.114 0.886 23 C -0.154 4.154 24 C -0.080 4.080 25 C -0.001 4.001 26 N -0.273 5.273 27 C -0.112 4.112 28 N -0.145 5.145 29 N -0.158 5.158 30 C -0.030 4.030 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.213 0.787 39 H 0.121 0.879 40 H 0.096 0.904 41 H 0.172 0.828 42 H 0.118 0.882 43 H 0.091 0.909 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.232 0.768 47 H 0.108 0.892 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.831 -10.021 6.540 12.105 hybrid contribution 0.432 2.084 -0.374 2.161 sum 2.262 -7.937 6.166 10.302 Atomic orbital electron populations 1.69925 1.06012 1.27411 1.49129 1.24933 0.94826 0.99291 0.94524 0.86502 0.80158 0.83294 0.77947 1.19602 1.20674 1.20784 1.21508 0.93651 0.90319 1.52782 0.91903 1.19487 0.87427 0.82309 0.99002 1.48262 1.45969 1.34604 1.03546 1.19677 0.95203 0.90250 0.87494 1.23211 1.00128 0.83041 1.00375 1.21675 0.97276 0.98812 1.04488 1.21795 1.02924 0.93267 1.05686 1.23961 0.90126 0.97880 1.00002 1.84106 1.44196 1.18698 1.59091 1.20277 0.81098 0.82388 0.85533 1.90637 1.35563 1.29318 1.87594 1.21928 1.01080 0.97422 0.88641 1.60413 1.13908 1.55038 0.99152 1.21999 0.99677 0.91241 0.90609 0.88632 1.21745 1.02087 0.99408 0.92140 1.20417 1.01608 0.86818 0.99169 1.24393 0.94026 0.96149 0.85486 1.70285 1.26277 1.06433 1.24322 1.26068 0.95892 0.94930 0.94272 1.78007 1.25281 1.02971 1.08260 1.50177 1.43239 1.10646 1.11740 1.22950 1.01570 1.00392 0.78134 0.92409 0.94301 0.94430 0.87031 0.89232 0.83388 0.83886 0.78702 0.87943 0.90393 0.82801 0.88172 0.90914 0.88036 0.87655 0.76759 0.89241 0.88127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.16 13.29 55.43 0.74 -22.42 16 2 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 19.62 29.54 -169.99 -5.02 14.60 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -12.94 9.28 -34.44 -0.32 -13.26 16 8 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 9 C 0.24 5.13 4.97 -5.19 -0.03 5.11 16 10 N -0.59 -11.40 2.44 -176.43 -0.43 -11.83 16 11 C 0.20 3.46 5.94 -5.19 -0.03 3.43 16 12 C -0.02 -0.27 6.90 -35.62 -0.25 -0.52 16 13 C -0.20 -3.26 10.81 -39.70 -0.43 -3.69 16 14 C -0.22 -3.06 10.91 -39.70 -0.43 -3.49 16 15 C -0.05 -0.71 12.09 29.42 0.36 -0.35 16 16 O -0.17 -2.88 10.65 5.74 0.06 -2.82 16 17 C 0.52 9.78 7.71 -10.99 -0.08 9.70 16 18 O -0.55 -11.38 15.78 5.56 0.09 -11.30 16 19 C 0.04 0.64 4.52 -4.98 -0.02 0.62 16 20 N -0.65 -8.52 5.88 -107.74 -0.63 -9.16 16 21 C 0.08 0.83 2.49 -67.47 -0.17 0.67 16 22 H 0.10 1.08 7.78 -51.93 -0.40 0.68 16 23 C -0.12 -1.00 5.57 -26.42 -0.15 -1.15 16 24 C -0.04 -0.34 6.33 -27.55 -0.17 -0.52 16 25 C 0.28 3.46 7.72 -155.78 -1.20 2.25 16 26 N -0.55 -7.50 11.18 -11.83 -0.13 -7.64 16 27 C 0.19 2.50 13.04 -91.39 -1.19 1.31 16 28 N -0.32 -4.78 12.74 29.38 0.37 -4.41 16 29 N -0.37 -4.99 4.04 -58.29 -0.24 -5.22 16 30 C 0.09 1.12 6.57 -4.00 -0.03 1.09 16 31 H 0.27 6.66 8.31 -40.82 -0.34 6.33 16 32 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.04 0.84 6.44 -51.93 -0.33 0.51 16 34 H 0.11 1.82 8.07 -51.93 -0.42 1.40 16 35 H 0.09 1.56 7.42 -51.93 -0.39 1.17 16 36 H 0.15 2.29 8.06 -52.49 -0.42 1.86 16 37 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.20 1.86 8.06 -52.48 -0.42 1.44 16 39 H 0.10 1.62 7.32 -51.94 -0.38 1.24 16 40 H 0.08 1.29 7.52 -51.93 -0.39 0.90 16 41 H 0.35 4.56 8.05 -39.29 -0.32 4.24 16 42 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 44 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.22 1.93 8.06 -52.49 -0.42 1.51 16 47 H 0.09 0.97 7.95 -51.93 -0.41 0.56 16 48 H 0.10 1.32 7.75 -51.93 -0.40 0.92 16 LS Contribution 404.41 15.07 6.09 6.09 Total: -1.00 -31.53 404.41 -10.13 -41.66 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -6.79 Total: 9.66 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -4.24 Total: 2.78 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -0.32 Total: -60.67 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.15 Total: -14.11 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.53 -10.13 -41.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075603395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.568 kcal (2) G-P(sol) polarization free energy of solvation -31.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds