Wall clock time and date at job start Tue Mar 31 2020 05:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00197 * 2 1 4 4 H 1.48497 * 109.47178 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46832 * 299.99546 * 3 2 1 6 6 H 1.48497 * 109.47411 * 59.99691 * 3 2 1 7 7 C 1.37882 * 119.99597 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99549 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00031 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.47094 * 179.97438 * 9 7 2 11 11 C 1.46503 * 120.00063 * 269.99992 * 10 9 7 12 12 C 1.50701 * 109.46798 * 269.99817 * 11 10 9 13 13 C 1.34516 * 125.78710 * 89.71739 * 12 11 10 14 14 C 1.41387 * 106.83747 * 179.88654 * 13 12 11 15 15 C 1.34515 * 106.83750 * 0.37072 * 14 13 12 16 16 O 1.34295 * 108.42383 * 359.77313 * 15 14 13 17 17 C 1.34780 * 119.99756 * 89.99392 * 10 9 7 18 18 O 1.21283 * 119.99185 * 180.02562 * 17 10 9 19 19 C 1.50694 * 120.00037 * 0.02562 * 17 10 9 20 20 N 1.46899 * 109.46926 * 179.97438 * 19 17 10 21 21 C 1.46896 * 111.00269 * 179.97438 * 20 19 17 22 22 H 1.09005 * 109.46317 * 35.00591 * 21 20 19 23 23 C 1.53166 * 109.47203 * 154.99878 * 21 20 19 24 24 C 1.53427 * 109.25342 * 189.19258 * 23 21 20 25 25 C 1.50927 * 108.19967 * 311.31166 * 24 23 21 26 26 N 1.30333 * 127.90375 * 195.92131 * 25 24 23 27 27 C 1.33467 * 109.72833 * 179.91715 * 26 25 24 28 28 N 1.30978 * 109.00230 * 0.03154 * 27 26 25 29 29 N 1.34675 * 124.05367 * 15.92008 * 25 24 23 30 30 C 1.46295 * 125.04803 * 0.15970 * 29 25 24 31 31 H 0.96998 * 119.99618 * 0.02562 * 1 2 3 32 32 H 1.08993 * 109.47589 * 59.99740 * 9 7 2 33 33 H 1.09000 * 109.47101 * 299.99142 * 9 7 2 34 34 H 1.08998 * 109.46977 * 29.99535 * 11 10 9 35 35 H 1.09002 * 109.47194 * 149.99382 * 11 10 9 36 36 H 1.07996 * 126.58207 * 0.02562 * 13 12 11 37 37 H 1.07995 * 126.57636 * 180.11739 * 14 13 12 38 38 H 1.08005 * 125.78468 * 179.78654 * 15 14 13 39 39 H 1.08989 * 109.47415 * 59.99655 * 19 17 10 40 40 H 1.09000 * 109.47199 * 299.99212 * 19 17 10 41 41 H 1.00902 * 111.00221 * 56.04379 * 20 19 17 42 42 H 1.09004 * 109.50104 * 309.12390 * 23 21 20 43 43 H 1.08996 * 109.50657 * 69.21317 * 23 21 20 44 44 H 1.09002 * 109.72150 * 70.98651 * 24 23 21 45 45 H 1.08998 * 109.71926 * 191.63553 * 24 23 21 46 46 H 1.08001 * 125.50355 * 180.02562 * 27 26 25 47 47 H 1.09000 * 109.58256 * 257.23039 * 30 29 25 48 48 H 1.09000 * 109.59141 * 136.80336 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 2.6789 -4.1696 -1.2682 12 6 1.7621 -5.2838 -1.7031 13 6 0.6665 -5.1463 -2.4714 14 6 0.1141 -6.4379 -2.6318 15 6 0.9006 -7.2860 -1.9452 16 8 1.8971 -6.5815 -1.3848 17 6 2.6409 -4.1249 1.1678 18 8 3.4293 -5.0465 1.1677 19 6 2.1509 -3.5524 2.4728 20 7 2.7709 -4.2783 3.5894 21 6 2.3160 -3.7459 4.8807 22 1 1.2746 -3.4346 4.7987 23 6 2.4412 -4.8321 5.9534 24 6 1.7563 -4.3536 7.2402 25 6 2.2440 -2.9577 7.5427 26 7 2.1448 -2.3003 8.6637 27 6 2.7012 -1.0945 8.5297 28 7 3.1636 -0.9714 7.3104 29 7 2.8762 -2.1701 6.6518 30 6 3.1804 -2.5411 5.2698 31 1 -0.4849 0.8401 -0.0004 32 1 0.6246 -2.5571 -0.8896 33 1 0.6241 -2.5567 0.8904 34 1 2.6866 -3.3880 -2.0279 35 1 3.6884 -4.5596 -1.1379 36 1 0.2837 -4.2263 -2.8878 37 1 -0.7718 -6.6936 -3.1940 38 1 0.7553 -8.3528 -1.8594 39 1 1.0674 -3.6547 2.5304 40 1 2.4199 -2.4977 2.5307 41 1 3.7774 -4.2532 3.5226 42 1 1.9609 -5.7460 5.6036 43 1 3.4948 -5.0277 6.1521 44 1 0.6754 -4.3430 7.0995 45 1 2.0140 -5.0197 8.0635 46 1 2.7604 -0.3417 9.3018 47 1 4.2345 -2.8054 5.1860 48 1 2.9580 -1.7032 4.6090 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075603395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:18 Heat of formation + Delta-G solvation = 58.423694 kcal Electronic energy + Delta-G solvation = -32136.333032 eV Core-core repulsion = 27808.253209 eV Total energy + Delta-G solvation = -4328.079822 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.174 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.43154 -43.34847 -40.83302 -38.95515 -36.91164 -35.22253 -34.66504 -34.19841 -33.83728 -32.05466 -31.21257 -30.04962 -29.15744 -27.75349 -26.09318 -25.08876 -24.61403 -23.21722 -22.92106 -22.58513 -21.59137 -20.79057 -19.95778 -18.81326 -18.21304 -17.96691 -17.88451 -17.54710 -17.20240 -16.75741 -16.58898 -16.24158 -16.02237 -15.90884 -15.51256 -15.32260 -15.16323 -14.99893 -14.45158 -14.32179 -14.08239 -13.88863 -13.70524 -13.63611 -13.44262 -13.38755 -13.21115 -13.07197 -12.93639 -12.70887 -12.64946 -12.52181 -12.14438 -12.12811 -11.91532 -11.74743 -11.14410 -10.89331 -10.79268 -10.76648 -10.60299 -10.52787 -9.73639 -9.59740 -9.37317 -8.24239 -6.37775 0.58770 0.75988 1.23912 1.36568 1.42237 1.49796 1.65305 1.71689 1.88884 2.16708 2.32623 2.39300 2.98121 3.07402 3.08449 3.18301 3.57420 3.69456 3.85880 3.87954 3.89516 4.07474 4.16479 4.18942 4.21914 4.25598 4.38489 4.39907 4.49793 4.54910 4.56932 4.59802 4.84091 4.90287 4.94912 5.05167 5.06923 5.13498 5.19773 5.22734 5.28443 5.41018 5.53397 5.64949 5.66937 5.75618 5.83203 6.01440 6.17330 6.27279 6.51425 6.77647 7.05520 7.25373 7.37385 8.81511 Molecular weight = 359.17amu Principal moments of inertia in cm(-1) A = 0.007922 B = 0.003208 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3533.620039 B = 8724.974799 C =11518.384867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.028 3.972 3 Si 0.947 3.053 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.284 1.284 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.255 3.745 10 N -0.595 5.595 11 C 0.197 3.803 12 C -0.043 4.043 13 C -0.207 4.207 14 C -0.225 4.225 15 C -0.043 4.043 16 O -0.189 6.189 17 C 0.515 3.485 18 O -0.570 6.570 19 C 0.052 3.948 20 N -0.648 5.648 21 C 0.084 3.916 22 H 0.091 0.909 23 C -0.105 4.105 24 C -0.035 4.035 25 C 0.275 3.725 26 N -0.566 5.566 27 C 0.192 3.808 28 N -0.359 5.359 29 N -0.378 5.378 30 C 0.096 3.904 31 H 0.267 0.733 32 H 0.024 0.976 33 H 0.030 0.970 34 H 0.116 0.884 35 H 0.086 0.914 36 H 0.148 0.852 37 H 0.172 0.828 38 H 0.239 0.761 39 H 0.103 0.897 40 H 0.067 0.933 41 H 0.353 0.647 42 H 0.113 0.887 43 H 0.077 0.923 44 H 0.116 0.884 45 H 0.128 0.872 46 H 0.246 0.754 47 H 0.098 0.902 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.261 -11.062 7.049 13.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.173 4.173 3 Si 0.774 3.226 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.210 1.210 7 C -0.581 4.581 8 H 0.076 0.924 9 C 0.135 3.865 10 N -0.326 5.326 11 C 0.074 3.926 12 C -0.094 4.094 13 C -0.227 4.227 14 C -0.244 4.244 15 C -0.110 4.110 16 O -0.085 6.085 17 C 0.304 3.696 18 O -0.450 6.450 19 C -0.080 4.080 20 N -0.280 5.280 21 C -0.028 4.028 22 H 0.110 0.890 23 C -0.143 4.143 24 C -0.075 4.075 25 C -0.001 4.001 26 N -0.294 5.294 27 C -0.110 4.110 28 N -0.187 5.187 29 N -0.169 5.169 30 C -0.028 4.028 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.048 0.952 34 H 0.134 0.866 35 H 0.105 0.895 36 H 0.165 0.835 37 H 0.189 0.811 38 H 0.255 0.745 39 H 0.121 0.879 40 H 0.085 0.915 41 H 0.174 0.826 42 H 0.131 0.869 43 H 0.096 0.904 44 H 0.134 0.866 45 H 0.146 0.854 46 H 0.262 0.738 47 H 0.116 0.884 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.547 -11.497 7.111 13.606 hybrid contribution 0.504 2.464 -0.569 2.578 sum 2.051 -9.033 6.542 11.340 Atomic orbital electron populations 1.70004 1.07102 1.28017 1.50416 1.25531 0.95387 1.01869 0.94494 0.85663 0.79152 0.80170 0.77658 1.19344 1.20434 1.21039 1.21690 0.93448 0.91258 1.51746 0.92440 1.19097 0.87298 0.82383 0.97747 1.48246 1.45612 1.34152 1.04605 1.19692 0.95253 0.90786 0.86901 1.23050 1.00992 0.83262 1.02058 1.21887 0.96995 0.99965 1.03890 1.22145 1.03963 0.92155 1.06149 1.24857 0.88469 0.99495 0.98190 1.84084 1.45665 1.18807 1.59953 1.20736 0.80662 0.82068 0.86180 1.90616 1.36354 1.30127 1.87909 1.21762 1.01104 0.96816 0.88329 1.60456 1.13908 1.54455 0.99158 1.22022 0.98999 0.91671 0.90121 0.89047 1.21691 1.02710 0.98723 0.91206 1.20623 1.02273 0.84901 0.99655 1.25171 0.92815 0.97176 0.84946 1.70330 1.27152 1.06923 1.25032 1.26746 0.94573 0.95373 0.94339 1.77947 1.27047 1.04341 1.09355 1.50253 1.43833 1.10653 1.12163 1.22938 1.02311 1.00084 0.77463 0.92397 0.95833 0.95201 0.86614 0.89521 0.83451 0.81066 0.74522 0.87918 0.91465 0.82646 0.86913 0.90392 0.86574 0.85385 0.73766 0.88400 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.26 13.29 21.45 0.28 -47.97 16 2 C 0.03 1.40 5.46 84.66 0.46 1.86 16 3 Si 0.95 40.38 29.54 68.60 2.03 42.41 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.54 -26.11 9.28 25.60 0.24 -25.88 16 8 H 0.06 2.79 7.81 -2.91 -0.02 2.77 16 9 C 0.26 11.27 4.97 85.63 0.43 11.70 16 10 N -0.60 -23.32 2.44 -830.49 -2.03 -25.34 16 11 C 0.20 7.03 5.94 85.63 0.51 7.54 16 12 C -0.04 -1.47 6.90 24.83 0.17 -1.30 16 13 C -0.21 -6.58 10.81 22.19 0.24 -6.34 16 14 C -0.23 -5.88 10.91 22.19 0.24 -5.64 16 15 C -0.04 -1.08 12.09 66.97 0.81 -0.27 16 16 O -0.19 -6.41 10.65 -2.37 -0.03 -6.43 16 17 C 0.51 19.57 7.71 87.65 0.68 20.24 16 18 O -0.57 -23.53 15.78 -3.04 -0.05 -23.57 16 19 C 0.05 1.64 4.52 85.56 0.39 2.03 16 20 N -0.65 -16.49 5.88 -494.79 -2.91 -19.40 16 21 C 0.08 1.73 2.49 45.07 0.11 1.85 16 22 H 0.09 2.00 7.78 -2.38 -0.02 1.98 16 23 C -0.10 -1.58 5.57 30.79 0.17 -1.41 16 24 C -0.03 -0.51 6.33 30.06 0.19 -0.32 16 25 C 0.27 6.52 7.72 138.37 1.07 7.59 16 26 N -0.57 -14.90 11.18 -191.33 -2.14 -17.04 16 27 C 0.19 4.87 13.04 180.62 2.35 7.23 16 28 N -0.36 -10.78 12.74 -60.96 -0.78 -11.56 16 29 N -0.38 -10.13 4.04 -338.35 -1.37 -11.49 16 30 C 0.10 2.28 6.57 86.52 0.57 2.85 16 31 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 32 H 0.02 1.11 8.07 -2.39 -0.02 1.10 16 33 H 0.03 1.37 6.44 -2.39 -0.02 1.35 16 34 H 0.12 3.90 8.07 -2.39 -0.02 3.88 16 35 H 0.09 3.09 7.42 -2.39 -0.02 3.08 16 36 H 0.15 4.58 8.06 -2.91 -0.02 4.56 16 37 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 38 H 0.24 3.62 8.06 -2.91 -0.02 3.60 16 39 H 0.10 3.27 7.32 -2.39 -0.02 3.26 16 40 H 0.07 2.29 7.52 -2.39 -0.02 2.27 16 41 H 0.35 8.96 8.05 -89.69 -0.72 8.23 16 42 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 43 H 0.08 1.14 8.12 -2.39 -0.02 1.12 16 44 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.25 4.10 8.06 -2.91 -0.02 4.08 16 47 H 0.10 2.11 7.95 -2.39 -0.02 2.09 16 48 H 0.08 2.23 7.75 -2.39 -0.02 2.21 16 Total: -1.00 -67.77 404.41 1.92 -65.86 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: 0.27 Total: 32.81 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: 8.62 Total: 21.73 kcal Atomic # 7 Polarization: -123.87 SS G_CDS: -8.93 Total: -132.80 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.07 Total: -30.00 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Total: -67.77 1.92 -65.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075603395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.282 kcal (2) G-P(sol) polarization free energy of solvation -67.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds