Wall clock time and date at job start Tue Mar 31 2020 05:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31356 * 1 3 3 Si 1.86801 * 120.00144 * 2 1 4 4 H 1.48506 * 109.46700 * 275.25688 * 3 2 1 5 5 H 1.48496 * 109.47233 * 35.25560 * 3 2 1 6 6 H 1.48500 * 109.47064 * 155.26107 * 3 2 1 7 7 C 1.39061 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00144 * 338.85156 * 7 2 1 9 9 N 1.36837 * 120.00173 * 158.85563 * 7 2 1 10 10 C 1.46501 * 119.99854 * 322.43761 * 9 7 2 11 11 C 1.50695 * 109.47644 * 265.33786 * 10 9 7 12 12 C 1.38241 * 120.00235 * 84.52986 * 11 10 9 13 13 C 1.38226 * 120.00093 * 179.97438 * 12 11 10 14 14 C 1.38239 * 120.00343 * 0.07422 * 13 12 11 15 15 C 1.38233 * 119.99838 * 359.90189 * 14 13 12 16 16 C 1.38238 * 120.00128 * 264.51134 * 11 10 9 17 17 C 1.34775 * 120.00366 * 142.44156 * 9 7 2 18 18 O 1.21623 * 120.00083 * 183.66205 * 17 9 7 19 19 C 1.47491 * 119.99750 * 3.66695 * 17 9 7 20 20 C 1.39590 * 120.22058 * 312.50449 * 19 17 9 21 21 C 1.37900 * 119.96223 * 179.97438 * 20 19 17 22 22 C 1.38542 * 120.41649 * 359.97438 * 21 20 19 23 23 C 1.38040 * 120.44618 * 0.02562 * 22 21 20 24 24 C 1.39202 * 120.02202 * 359.74028 * 23 22 21 25 25 C 1.48180 * 120.20526 * 180.27700 * 24 23 22 26 26 C 1.39818 * 120.92730 * 126.79014 * 25 24 23 27 27 N 1.32178 * 118.93808 * 179.76746 * 26 25 24 28 28 C 1.31844 * 120.95027 * 0.52365 * 27 26 25 29 29 N 1.31840 * 122.07131 * 359.72358 * 28 27 26 30 30 C 1.32179 * 120.95488 * 0.02562 * 29 28 27 31 31 H 0.97004 * 119.99382 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.47055 * 145.33011 * 10 9 7 33 33 H 1.09006 * 109.46825 * 25.33914 * 10 9 7 34 34 H 1.07998 * 119.99771 * 359.70512 * 12 11 10 35 35 H 1.08002 * 120.00316 * 179.97438 * 13 12 11 36 36 H 1.07996 * 120.00209 * 180.02562 * 14 13 12 37 37 H 1.08000 * 120.00426 * 180.02562 * 15 14 13 38 38 H 1.08002 * 119.99413 * 359.97438 * 16 11 10 39 39 H 1.08005 * 120.01925 * 0.02562 * 20 19 17 40 40 H 1.08004 * 119.79126 * 179.97438 * 21 20 19 41 41 H 1.07997 * 119.77682 * 179.97438 * 22 21 20 42 42 H 1.07993 * 119.99000 * 180.02562 * 23 22 21 43 43 H 1.07999 * 120.52834 * 0.02640 * 26 25 24 44 44 H 1.08002 * 118.95855 * 179.74973 * 28 27 26 45 45 H 1.08001 * 120.52799 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 2.3840 2.1105 -1.3943 5 1 1.5051 2.6181 0.8081 6 1 3.5963 1.4106 0.5859 7 6 2.0088 -1.2043 0.0005 8 1 1.5234 -2.1080 0.3384 9 7 3.3081 -1.2445 -0.4269 10 6 3.7327 -0.4171 -1.5589 11 6 3.6601 -1.2264 -2.8280 12 6 2.4639 -1.3321 -3.5129 13 6 2.3975 -2.0741 -4.6773 14 6 3.5267 -2.7117 -5.1561 15 6 4.7229 -2.6056 -4.4715 16 6 4.7896 -1.8629 -3.3075 17 6 4.1972 -2.0453 0.1934 18 8 5.3659 -2.0316 -0.1429 19 6 3.7528 -2.9382 1.2799 20 6 2.9419 -2.4479 2.3049 21 6 2.5291 -3.2876 3.3179 22 6 2.9135 -4.6185 3.3261 23 6 3.7151 -5.1213 2.3211 24 6 4.1385 -4.2913 1.2869 25 6 4.9940 -4.8282 0.2027 26 6 4.6362 -4.6708 -1.1397 27 7 5.4307 -5.1614 -2.0752 28 6 6.5396 -5.7995 -1.7567 29 7 6.9116 -5.9744 -0.5040 30 6 6.1784 -5.5118 0.4938 31 1 -0.4849 0.8401 -0.0004 32 1 4.7576 -0.0820 -1.3997 33 1 3.0762 0.4491 -1.6422 34 1 1.5804 -0.8386 -3.1359 35 1 1.4629 -2.1570 -5.2122 36 1 3.4749 -3.2910 -6.0660 37 1 5.6053 -3.1034 -4.8457 38 1 5.7243 -1.7797 -2.7727 39 1 2.6373 -1.4117 2.3041 40 1 1.9020 -2.9052 4.1098 41 1 2.5846 -5.2669 4.1247 42 1 4.0101 -6.1601 2.3346 43 1 3.7272 -4.1530 -1.4081 44 1 7.1631 -6.1909 -2.5470 45 1 6.4898 -5.6587 1.5174 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078087722.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:17 Heat of formation + Delta-G solvation = 86.758228 kcal Electronic energy + Delta-G solvation = -32617.985553 eV Core-core repulsion = 28566.150576 eV Total energy + Delta-G solvation = -4051.834976 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 359.137 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.78833 -39.62436 -38.64414 -37.53001 -35.18139 -33.41411 -33.07457 -32.35777 -31.51414 -30.32577 -30.23043 -29.18069 -26.11997 -25.23476 -24.32932 -24.19214 -22.61085 -21.96766 -21.43023 -20.82121 -19.30568 -17.84653 -17.35663 -17.10079 -16.73008 -16.14226 -15.91555 -15.61673 -14.91075 -14.75149 -14.65274 -14.34257 -14.14052 -13.85472 -13.70426 -13.41029 -13.29932 -13.18893 -12.89960 -12.79828 -12.66462 -12.53045 -12.05286 -12.01446 -11.75745 -11.53563 -11.13327 -11.07015 -10.81546 -10.53916 -10.48110 -10.46505 -10.27841 -10.07749 -9.68607 -9.35254 -9.02705 -8.83081 -8.46685 -8.34784 -8.21176 -8.14276 -7.98995 -6.64894 -4.22447 0.89935 1.39241 1.54822 1.82480 1.84908 1.97829 2.92204 3.09964 3.16301 3.50584 3.94042 3.99383 4.07776 4.24832 4.36942 4.49752 4.54527 4.76449 4.79248 4.89881 5.17268 5.34643 5.37824 5.39105 5.39727 5.50856 5.53972 5.64203 5.70037 5.77749 5.84489 5.90876 6.04855 6.12340 6.16788 6.18438 6.27056 6.38168 6.52314 6.59678 6.62357 6.70793 6.84436 6.89856 7.00632 7.02216 7.11520 7.19247 7.26359 7.30936 7.54919 7.87595 8.08948 8.33893 8.74758 9.13501 9.46558 10.44016 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.007855 B = 0.006337 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3563.795816 B = 4417.701663 C = 7007.008568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.072 3.928 3 Si 0.863 3.137 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.347 4.347 8 H 0.109 0.891 9 N -0.445 5.445 10 C 0.137 3.863 11 C -0.091 4.091 12 C -0.093 4.093 13 C -0.130 4.130 14 C -0.125 4.125 15 C -0.115 4.115 16 C -0.094 4.094 17 C 0.515 3.485 18 O -0.582 6.582 19 C -0.071 4.071 20 C -0.055 4.055 21 C -0.126 4.126 22 C -0.112 4.112 23 C -0.119 4.119 24 C -0.023 4.023 25 C -0.125 4.125 26 C 0.184 3.816 27 N -0.506 5.506 28 C 0.278 3.722 29 N -0.524 5.524 30 C 0.156 3.844 31 H 0.277 0.723 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.144 0.856 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.159 0.841 44 H 0.189 0.811 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.526 -6.656 -0.133 8.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.136 4.136 3 Si 0.690 3.310 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.473 4.473 8 H 0.126 0.874 9 N -0.164 5.164 10 C 0.014 3.986 11 C -0.092 4.092 12 C -0.111 4.111 13 C -0.148 4.148 14 C -0.144 4.144 15 C -0.133 4.133 16 C -0.112 4.112 17 C 0.304 3.696 18 O -0.467 6.467 19 C -0.074 4.074 20 C -0.073 4.073 21 C -0.144 4.144 22 C -0.130 4.130 23 C -0.137 4.137 24 C -0.026 4.026 25 C -0.129 4.129 26 C 0.018 3.982 27 N -0.219 5.219 28 C -0.009 4.009 29 N -0.237 5.237 30 C -0.010 4.010 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.143 0.857 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.162 0.838 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.176 0.824 44 H 0.206 0.794 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.482 -6.867 -1.059 8.850 hybrid contribution -0.522 1.342 0.680 1.592 sum 4.959 -5.525 -0.379 7.434 Atomic orbital electron populations 1.69732 1.06189 1.28379 1.43820 1.25282 0.94991 0.98158 0.95217 0.87151 0.81440 0.83906 0.78533 1.19789 1.21109 1.18290 1.19119 0.85678 0.96792 1.45749 0.87357 1.43607 1.09616 1.38297 1.24829 1.20641 1.00683 0.93062 0.84187 1.20194 0.93634 0.99364 0.96014 1.21137 0.97524 0.98262 0.94205 1.21048 0.98055 0.98695 0.96996 1.21008 0.93287 1.00169 0.99905 1.20947 0.97534 0.99103 0.95728 1.21068 0.98242 0.96440 0.95482 1.18122 0.85051 0.83611 0.82782 1.90676 1.17276 1.71174 1.67580 1.19945 0.98172 0.92679 0.96633 1.21545 0.92629 1.01474 0.91688 1.21172 1.00581 0.93763 0.98929 1.21064 0.98028 0.95688 0.98253 1.20927 0.99693 0.98931 0.94189 1.18376 0.97648 0.92395 0.94136 1.20414 0.97211 0.99973 0.95272 1.23233 0.97023 0.90405 0.87565 1.68363 1.05422 1.10066 1.38049 1.24828 0.91462 0.92180 0.92476 1.68296 1.33061 1.21141 1.01188 1.23171 0.88788 0.90242 0.98821 0.91232 0.90589 0.90453 0.85703 0.86768 0.87023 0.86903 0.86441 0.83802 0.85890 0.86149 0.86145 0.82383 0.79437 0.81977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.23 13.95 55.50 0.77 -20.46 16 2 C 0.07 1.72 5.30 -17.45 -0.09 1.63 16 3 Si 0.86 18.79 24.97 -169.99 -4.24 14.54 16 4 H -0.27 -5.77 6.68 56.52 0.38 -5.39 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.35 -8.10 7.27 -15.01 -0.11 -8.21 16 8 H 0.11 2.72 6.83 -52.48 -0.36 2.36 16 9 N -0.44 -9.87 2.17 -117.30 -0.25 -10.13 16 10 C 0.14 2.90 4.15 -5.20 -0.02 2.88 16 11 C -0.09 -1.79 5.43 -104.62 -0.57 -2.36 16 12 C -0.09 -1.75 9.72 -39.58 -0.38 -2.14 16 13 C -0.13 -2.13 10.05 -39.59 -0.40 -2.52 16 14 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 15 C -0.12 -1.87 10.05 -39.58 -0.40 -2.27 16 16 C -0.09 -1.73 9.68 -39.58 -0.38 -2.11 16 17 C 0.51 11.25 5.55 -12.49 -0.07 11.18 16 18 O -0.58 -13.62 14.83 5.26 0.08 -13.54 16 19 C -0.07 -1.39 5.08 -104.69 -0.53 -1.92 16 20 C -0.05 -0.99 7.90 -39.20 -0.31 -1.30 16 21 C -0.13 -1.88 10.02 -39.59 -0.40 -2.27 16 22 C -0.11 -1.49 10.03 -39.54 -0.40 -1.88 16 23 C -0.12 -1.69 9.59 -39.30 -0.38 -2.06 16 24 C -0.02 -0.40 5.51 -104.53 -0.58 -0.97 16 25 C -0.12 -2.14 4.41 -104.63 -0.46 -2.60 16 26 C 0.18 3.36 9.32 -16.81 -0.16 3.20 16 27 N -0.51 -8.62 10.42 -14.28 -0.15 -8.77 16 28 C 0.28 4.19 12.27 -92.07 -1.13 3.06 16 29 N -0.52 -8.17 10.42 -14.28 -0.15 -8.32 16 30 C 0.16 2.41 10.90 -16.81 -0.18 2.22 16 31 H 0.28 6.55 8.31 -40.82 -0.34 6.21 16 32 H 0.08 1.62 7.42 -51.93 -0.39 1.23 16 33 H 0.08 1.67 3.40 -51.93 -0.18 1.49 16 34 H 0.12 2.49 8.06 -52.49 -0.42 2.06 16 35 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 37 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.12 2.30 7.83 -52.49 -0.41 1.89 16 39 H 0.14 2.79 6.84 -52.48 -0.36 2.43 16 40 H 0.12 1.54 8.06 -52.48 -0.42 1.11 16 41 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 42 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.16 3.18 7.63 -52.49 -0.40 2.78 16 44 H 0.19 2.14 8.06 -52.49 -0.42 1.71 16 45 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 380.69 15.07 5.74 5.74 Total: -1.00 -27.57 380.69 -10.60 -38.17 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -5.05 Total: 13.55 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -7.34 Total: -10.78 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.22 Total: -47.67 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.08 Total: -13.54 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -4.24 Total: 14.54 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -27.57 -10.60 -38.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078087722.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.927 kcal (2) G-P(sol) polarization free energy of solvation -27.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds