Wall clock time and date at job start Tue Mar 31 2020 06:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.28648 * 124.72315 * 2 1 4 4 C 1.33562 * 115.77039 * 179.97438 * 3 2 1 5 5 C 1.47239 * 123.14070 * 180.02562 * 4 3 2 6 6 O 1.21648 * 120.00116 * 175.58356 * 5 4 3 7 7 N 1.34781 * 120.00578 * 355.58532 * 5 4 3 8 8 C 1.46503 * 119.99552 * 5.82629 * 7 5 4 9 9 C 1.50696 * 109.47150 * 276.05510 * 8 7 5 10 10 H 1.08006 * 119.99993 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00134 * 179.97438 * 9 8 7 12 12 N 1.31518 * 119.99465 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00257 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47123 * 60.00048 * 13 11 9 15 15 H 1.48500 * 109.47287 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46952 * 300.00413 * 13 11 9 17 17 C 1.40043 * 120.00096 * 185.83271 * 7 5 4 18 18 C 1.38853 * 120.01629 * 172.87005 * 17 7 5 19 19 C 1.38131 * 120.03332 * 179.79195 * 18 17 7 20 20 C 1.38712 * 120.16417 * 0.22183 * 19 18 17 21 21 C 1.38998 * 119.93467 * 359.95205 * 20 19 18 22 22 C 1.38647 * 119.88560 * 0.11539 * 21 20 19 23 23 O 1.36118 * 120.77935 * 180.20667 * 21 20 19 24 24 C 1.43163 * 116.71273 * 342.70870 * 23 21 20 25 25 C 1.53467 * 108.23660 * 46.27997 * 24 23 21 26 26 O 1.36210 * 119.31609 * 179.80686 * 20 19 18 27 27 C 1.35215 * 113.71197 * 0.27062 * 4 3 2 28 28 S 1.70769 * 124.71963 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47431 * 89.99932 * 1 2 3 30 30 H 1.09000 * 109.47500 * 210.00071 * 1 2 3 31 31 H 1.09007 * 109.47075 * 329.99810 * 1 2 3 32 32 H 1.09001 * 109.46808 * 36.05870 * 8 7 5 33 33 H 1.09001 * 109.46580 * 156.05485 * 8 7 5 34 34 H 0.97004 * 119.99535 * 179.97438 * 12 11 9 35 35 H 1.08001 * 119.98619 * 0.06942 * 18 17 7 36 36 H 1.07999 * 119.91918 * 180.24926 * 19 18 17 37 37 H 1.07998 * 119.98819 * 179.88342 * 22 21 20 38 38 H 1.09008 * 109.71422 * 286.59414 * 24 23 21 39 39 H 1.09001 * 109.71132 * 165.96577 * 24 23 21 40 40 H 1.08991 * 109.71537 * 180.53827 * 25 24 23 41 41 H 1.09008 * 109.74117 * 59.93193 * 25 24 23 42 42 H 1.07998 * 125.58517 * 179.73449 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2397 1.0574 0.0000 4 6 3.5591 0.8495 0.0005 5 6 4.5461 1.9421 0.0012 6 8 5.7332 1.6894 0.0828 7 7 4.1344 3.2224 -0.0886 8 6 2.7036 3.5355 -0.0582 9 6 2.1259 3.3805 -1.4414 10 1 2.7610 3.0785 -2.2611 11 6 0.7864 3.6231 -1.6602 12 7 0.0130 3.9904 -0.6619 13 14 0.0701 3.4303 -3.3746 14 1 0.2615 2.0321 -3.8367 15 1 -1.3802 3.7478 -3.3438 16 1 0.7599 4.3583 -4.3065 17 6 5.0744 4.2532 -0.2111 18 6 4.6517 5.5537 -0.4520 19 6 5.5783 6.5715 -0.5686 20 6 6.9329 6.2977 -0.4503 21 6 7.3594 4.9962 -0.2127 22 6 6.4291 3.9747 -0.0971 23 8 8.6841 4.7088 -0.0895 24 6 9.6038 5.6888 -0.5827 25 6 9.1531 7.0668 -0.0794 26 8 7.8318 7.3137 -0.5722 27 6 3.9036 -0.4580 -0.0048 28 16 2.4796 -1.4036 0.0006 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 2.1971 2.8543 0.6256 33 1 2.5635 4.5618 0.2812 34 1 -0.9293 4.1615 -0.8159 35 1 3.5976 5.7704 -0.5438 36 1 5.2472 7.5830 -0.7520 37 1 6.7587 2.9626 0.0856 38 1 9.6037 5.6776 -1.6728 39 1 10.6058 5.4719 -0.2125 40 1 9.8330 7.8339 -0.4497 41 1 9.1467 7.0765 1.0106 42 1 4.9130 -0.8419 -0.0095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079000360.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:47 Heat of formation + Delta-G solvation = -13.063217 kcal Electronic energy + Delta-G solvation = -30167.917047 eV Core-core repulsion = 26013.645682 eV Total energy + Delta-G solvation = -4154.271364 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.098 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.39856 -41.72772 -40.11774 -38.49990 -38.14718 -36.59082 -34.43233 -33.18821 -31.90835 -31.47042 -29.43023 -29.22258 -28.88909 -26.49823 -25.58843 -24.66006 -23.83636 -22.44268 -21.30515 -20.52668 -19.72993 -19.22858 -18.66111 -18.31544 -18.14571 -17.38254 -16.86219 -16.59040 -16.44779 -16.24740 -15.86370 -15.80129 -15.46176 -15.30019 -15.06406 -14.93655 -14.44043 -14.29928 -14.28127 -14.00202 -13.76604 -13.40410 -13.34631 -13.03008 -12.95350 -12.83136 -12.70464 -12.56807 -12.48847 -12.08321 -11.97424 -11.67661 -11.62253 -10.60105 -10.53463 -10.49644 -10.35303 -9.93982 -9.74951 -9.48512 -8.54148 -8.02656 -6.09354 -0.45297 0.22640 0.31222 0.43076 0.70165 1.16754 1.39978 1.43275 1.49052 1.92167 2.12067 2.33587 2.41933 2.48733 2.80750 3.12750 3.29219 3.37149 3.72286 3.82704 3.98168 4.09930 4.15777 4.20930 4.28459 4.34773 4.43489 4.49907 4.60850 4.62330 4.66877 4.76571 4.83215 4.95611 5.12130 5.20054 5.28451 5.32704 5.40850 5.56818 5.81619 5.93394 6.00186 6.21147 6.37311 6.48398 6.74131 6.91728 7.11383 7.52632 9.03711 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.003672 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.936984 B = 7623.134889 C = 9536.507936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.000 4.000 3 N -0.413 5.413 4 C -0.014 4.014 5 C 0.582 3.418 6 O -0.552 6.552 7 N -0.524 5.524 8 C 0.243 3.757 9 C -0.501 4.501 10 H 0.027 0.973 11 C 0.047 3.953 12 N -0.905 5.905 13 Si 0.931 3.069 14 H -0.277 1.277 15 H -0.276 1.276 16 H -0.284 1.284 17 C 0.149 3.851 18 C -0.147 4.147 19 C -0.088 4.088 20 C 0.016 3.984 21 C 0.065 3.935 22 C -0.191 4.191 23 O -0.323 6.323 24 C 0.011 3.989 25 C 0.016 3.984 26 O -0.319 6.319 27 C -0.235 4.235 28 S 0.271 5.729 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.021 0.979 34 H 0.264 0.736 35 H 0.136 0.864 36 H 0.158 0.842 37 H 0.177 0.823 38 H 0.077 0.923 39 H 0.157 0.843 40 H 0.159 0.841 41 H 0.078 0.922 42 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.469 -4.135 2.341 10.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.280 4.280 3 N -0.128 5.128 4 C -0.149 4.149 5 C 0.372 3.628 6 O -0.435 6.435 7 N -0.242 5.242 8 C 0.124 3.876 9 C -0.540 4.540 10 H 0.045 0.955 11 C -0.154 4.154 12 N -0.545 5.545 13 Si 0.758 3.242 14 H -0.203 1.203 15 H -0.201 1.201 16 H -0.211 1.211 17 C 0.053 3.947 18 C -0.167 4.167 19 C -0.107 4.107 20 C -0.030 4.030 21 C 0.020 3.980 22 C -0.211 4.211 23 O -0.238 6.238 24 C -0.063 4.063 25 C -0.059 4.059 26 O -0.234 6.234 27 C -0.378 4.378 28 S 0.529 5.471 29 H 0.098 0.902 30 H 0.131 0.869 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.154 0.846 36 H 0.175 0.825 37 H 0.193 0.807 38 H 0.095 0.905 39 H 0.174 0.826 40 H 0.176 0.824 41 H 0.096 0.904 42 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 9.369 -4.777 2.450 10.798 hybrid contribution 0.237 1.068 -1.115 1.562 sum 9.606 -3.709 1.335 10.384 Atomic orbital electron populations 1.20446 0.83892 1.04663 1.03910 1.27824 1.03743 0.91657 1.04732 1.67568 1.02281 1.30359 1.12551 1.20134 0.90618 0.93039 1.11149 1.17735 0.86838 0.82352 0.75919 1.90332 1.16625 1.83624 1.52877 1.45915 1.09745 1.04236 1.64294 1.19853 0.72081 0.96793 0.98843 1.20946 0.93998 1.45964 0.93117 0.95496 1.25113 0.96549 0.94903 0.98805 1.69980 1.05973 1.46944 1.31600 0.86050 0.77796 0.78298 0.82025 1.20295 1.20083 1.21058 1.17923 0.88388 0.88816 0.99569 1.20861 1.00797 0.90571 1.04476 1.20355 0.88584 1.00304 1.01486 1.18849 0.90679 0.86055 1.07409 1.18699 0.84465 0.91751 1.03125 1.21832 0.90145 1.02114 1.07022 1.86269 1.12460 1.46360 1.78748 1.24015 0.94095 0.87788 1.00410 1.23943 0.82212 0.99307 1.00439 1.86261 1.21546 1.36368 1.79229 1.26810 1.07718 0.96376 1.06881 1.82000 0.91849 1.09584 1.63641 0.90160 0.86907 0.90891 0.90828 0.96160 0.92691 0.84622 0.82473 0.80673 0.90508 0.82582 0.82364 0.90360 0.78578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.93 10.46 71.23 0.74 -1.18 16 2 C 0.00 0.00 7.34 88.57 0.65 0.65 16 3 N -0.41 -17.53 5.70 -180.86 -1.03 -18.56 16 4 C -0.01 -0.58 6.43 40.55 0.26 -0.32 16 5 C 0.58 27.10 7.54 86.61 0.65 27.75 16 6 O -0.55 -25.77 13.12 -4.18 -0.05 -25.82 16 7 N -0.52 -25.35 2.70 -639.09 -1.73 -27.08 16 8 C 0.24 12.45 4.22 85.63 0.36 12.82 16 9 C -0.50 -26.93 7.79 25.60 0.20 -26.73 16 10 H 0.03 1.54 7.81 -2.91 -0.02 1.52 16 11 C 0.05 2.46 5.46 84.65 0.46 2.92 16 12 N -0.91 -48.52 13.29 21.45 0.28 -48.24 16 13 Si 0.93 42.32 29.54 68.60 2.03 44.35 16 14 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 15 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 16 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 17 C 0.15 6.81 6.49 38.10 0.25 7.06 16 18 C -0.15 -6.17 9.16 22.39 0.21 -5.97 16 19 C -0.09 -3.18 9.95 22.36 0.22 -2.96 16 20 C 0.02 0.55 6.50 22.57 0.15 0.70 16 21 C 0.07 2.49 6.49 22.55 0.15 2.63 16 22 C -0.19 -8.34 8.97 22.50 0.20 -8.14 16 23 O -0.32 -10.59 10.42 -82.67 -0.86 -11.45 16 24 C 0.01 0.23 7.26 72.14 0.52 0.76 16 25 C 0.02 0.30 7.26 72.14 0.52 0.82 16 26 O -0.32 -9.24 10.42 -83.72 -0.87 -10.11 16 27 C -0.24 -7.55 10.62 67.12 0.71 -6.84 16 28 S 0.27 6.64 22.92 -56.49 -1.29 5.35 16 29 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 32 H 0.07 3.94 5.58 -2.39 -0.01 3.93 16 33 H 0.02 1.10 6.18 -2.39 -0.01 1.08 16 34 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 35 H 0.14 6.02 6.22 -2.91 -0.02 6.01 16 36 H 0.16 4.75 8.06 -2.91 -0.02 4.73 16 37 H 0.18 8.18 4.51 -63.37 -0.29 7.89 16 38 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 39 H 0.16 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.16 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.08 1.44 8.14 -2.38 -0.02 1.43 16 42 H 0.20 5.51 8.03 -2.91 -0.02 5.49 16 Total: -1.00 -70.14 363.05 3.55 -66.59 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.81 Total: 21.00 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 6.26 Total: 3.98 kcal Atomic # 7 Polarization: -91.40 SS G_CDS: -2.47 Total: -93.87 kcal Atomic # 8 Polarization: -45.60 SS G_CDS: -1.79 Total: -47.39 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: 6.64 SS G_CDS: -1.29 Total: 5.35 kcal Total: -70.14 3.55 -66.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079000360.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.527 kcal (2) G-P(sol) polarization free energy of solvation -70.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds