Wall clock time and date at job start Tue Mar 31 2020 06:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46872 * 2 1 4 4 N 1.46500 * 109.46883 * 119.99365 * 2 1 3 5 5 C 1.39659 * 120.00296 * 274.99817 * 4 2 1 6 6 C 1.38974 * 120.04873 * 0.02562 * 5 4 2 7 7 C 1.38115 * 120.03637 * 179.97438 * 6 5 4 8 8 C 1.38217 * 120.13082 * 359.97438 * 7 6 5 9 9 C 1.38775 * 120.09137 * 0.02562 * 8 7 6 10 10 O 1.35898 * 120.01691 * 180.02562 * 9 8 7 11 11 C 1.42894 * 117.00146 * 0.02562 * 10 9 8 12 12 C 1.52992 * 109.47481 * 179.97438 * 11 10 9 13 13 F 1.39907 * 109.47081 * 60.00093 * 12 11 10 14 14 F 1.39903 * 109.47750 * 180.02562 * 12 11 10 15 15 F 1.39906 * 109.47302 * 300.00354 * 12 11 10 16 16 C 1.38615 * 119.96288 * 0.02562 * 9 8 7 17 17 C 1.50694 * 109.47192 * 239.99640 * 2 1 3 18 18 O 1.21283 * 120.00079 * 254.24905 * 17 2 1 19 19 N 1.34783 * 120.00147 * 74.25012 * 17 2 1 20 20 C 1.46503 * 119.99850 * 3.63205 * 19 17 2 21 21 C 1.46492 * 120.00072 * 183.63390 * 19 17 2 22 22 C 1.50701 * 109.47404 * 89.99997 * 21 19 17 23 23 H 1.08002 * 119.99534 * 359.97438 * 22 21 19 24 24 C 1.37878 * 119.99973 * 179.97438 * 22 21 19 25 25 N 1.31513 * 120.00127 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99661 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47055 * 59.99991 * 26 24 22 28 28 H 1.48495 * 109.47040 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47204 * 300.00214 * 26 24 22 30 30 H 1.09000 * 109.46873 * 56.00023 * 1 2 3 31 31 H 1.09000 * 109.46906 * 175.99936 * 1 2 3 32 32 H 1.08994 * 109.47181 * 295.99824 * 1 2 3 33 33 H 0.97009 * 119.99665 * 95.00600 * 4 2 1 34 34 H 1.07997 * 119.98033 * 0.25779 * 6 5 4 35 35 H 1.08002 * 119.93331 * 179.97438 * 7 6 5 36 36 H 1.07996 * 119.95249 * 179.97438 * 8 7 6 37 37 H 1.09000 * 109.47230 * 300.00444 * 11 10 9 38 38 H 1.09005 * 109.47062 * 59.99480 * 11 10 9 39 39 H 1.08006 * 120.06432 * 179.97438 * 16 9 8 40 40 H 1.09002 * 109.46706 * 84.66298 * 20 19 17 41 41 H 1.08999 * 109.47078 * 204.66681 * 20 19 17 42 42 H 1.09004 * 109.46925 * 324.67241 * 20 19 17 43 43 H 1.09002 * 109.47162 * 210.00022 * 21 19 17 44 44 H 1.09000 * 109.47278 * 329.99902 * 21 19 17 45 45 H 0.96997 * 119.99860 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1517 0.0063 2.3992 6 6 1.8211 1.3546 2.4628 7 6 1.9526 2.0433 3.6528 8 6 2.4125 1.3941 4.7830 9 6 2.7443 0.0478 4.7255 10 8 3.1958 -0.5891 5.8378 11 6 3.3038 0.1884 7.0319 12 6 3.8242 -0.6929 8.1691 13 9 5.0825 -1.2002 7.8276 14 9 3.9294 0.0682 9.3383 15 9 2.9360 -1.7528 8.3815 16 6 2.6147 -0.6468 3.5330 17 6 2.0324 -0.7105 -1.2304 18 8 2.5033 -1.8243 -1.1377 19 7 1.9583 -0.1081 -2.4338 20 6 1.4634 1.2670 -2.5355 21 6 2.3726 -0.8285 -3.6402 22 6 1.1905 -1.5641 -4.2170 23 1 0.2271 -1.5016 -3.7329 24 6 1.3391 -2.3170 -5.3625 25 7 2.5124 -2.3935 -5.9516 26 14 -0.1261 -3.2293 -6.0770 27 1 -1.1941 -2.2571 -6.4225 28 1 0.2939 -3.9595 -7.2999 29 1 -0.6427 -4.1971 -5.0760 30 1 -0.3633 0.5747 -0.8520 31 1 -0.3633 -1.0252 -0.0717 32 1 -0.3633 0.4504 0.9236 33 1 2.2491 -1.6317 1.1527 34 1 1.4567 1.8630 1.5824 35 1 1.6956 3.0913 3.7002 36 1 2.5147 1.9356 5.7118 37 1 3.9954 1.0145 6.8663 38 1 2.3234 0.5834 7.2982 39 1 2.8728 -1.6946 3.4864 40 1 2.2818 1.9624 -2.3485 41 1 1.0639 1.4364 -3.5353 42 1 0.6765 1.4254 -1.7980 43 1 2.7525 -0.1186 -4.3749 44 1 3.1561 -1.5425 -3.3861 45 1 2.6167 -2.9228 -6.7577 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079029586.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:19 Heat of formation + Delta-G solvation = -188.346117 kcal Electronic energy + Delta-G solvation = -31511.583287 eV Core-core repulsion = 26500.934569 eV Total energy + Delta-G solvation = -5010.648718 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.145 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.56763 -48.13102 -48.00707 -40.56171 -39.62015 -38.15466 -35.43211 -34.94699 -32.77197 -31.80346 -31.21526 -29.32754 -28.41696 -27.72683 -26.12095 -24.46525 -23.97068 -23.06399 -22.43145 -21.23244 -19.24311 -19.09848 -18.84011 -18.25333 -18.22664 -16.87751 -16.58798 -16.36698 -16.27137 -16.06070 -15.47475 -15.02821 -14.92361 -14.84977 -14.75517 -14.67262 -14.47403 -14.18436 -14.18110 -14.03724 -13.82131 -13.71408 -13.32670 -13.15250 -12.87784 -12.51428 -12.34354 -12.23683 -12.09372 -11.91531 -11.86799 -11.52048 -11.38038 -11.24894 -11.13982 -10.94663 -10.63061 -10.22929 -10.18647 -9.72988 -9.07252 -8.59000 -8.49801 -7.78618 -7.54796 -6.10859 -4.16469 1.29291 1.41953 1.79307 2.59904 3.15626 3.20468 3.27203 3.29591 3.32381 3.36490 3.44907 3.69688 3.88056 3.95057 4.34426 4.38225 4.41936 4.66842 4.80974 4.89247 4.94830 5.09911 5.15957 5.21251 5.23908 5.38451 5.42056 5.66395 5.68924 5.79304 5.81409 6.03992 6.05749 6.12806 6.25314 6.32085 6.36745 6.88171 6.98575 7.23814 7.34518 7.41700 7.72322 7.84422 8.14493 8.25299 8.76627 8.92195 9.48778 10.97167 Molecular weight = 360.14amu Principal moments of inertia in cm(-1) A = 0.021173 B = 0.001696 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.140930 B =16504.754388 C =17077.999380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.129 3.871 3 H 0.098 0.902 4 N -0.719 5.719 5 C 0.266 3.734 6 C -0.231 4.231 7 C -0.031 4.031 8 C -0.272 4.272 9 C 0.170 3.830 10 O -0.302 6.302 11 C 0.017 3.983 12 C 0.464 3.536 13 F -0.173 7.173 14 F -0.173 7.173 15 F -0.173 7.173 16 C -0.224 4.224 17 C 0.503 3.497 18 O -0.538 6.538 19 N -0.595 5.595 20 C 0.072 3.928 21 C 0.245 3.755 22 C -0.530 4.530 23 H 0.057 0.943 24 C 0.062 3.938 25 N -0.893 5.893 26 Si 0.899 3.101 27 H -0.276 1.276 28 H -0.286 1.286 29 H -0.276 1.276 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.413 0.587 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.131 0.869 40 H 0.046 0.954 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.034 0.966 44 H 0.045 0.955 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.039 12.493 25.742 28.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.020 3.980 3 H 0.115 0.885 4 N -0.347 5.347 5 C 0.160 3.840 6 C -0.253 4.253 7 C -0.050 4.050 8 C -0.293 4.293 9 C 0.125 3.875 10 O -0.216 6.216 11 C -0.060 4.060 12 C 0.410 3.590 13 F -0.154 7.154 14 F -0.155 7.155 15 F -0.155 7.155 16 C -0.247 4.247 17 C 0.288 3.712 18 O -0.415 6.415 19 N -0.327 5.327 20 C -0.072 4.072 21 C 0.126 3.874 22 C -0.569 4.569 23 H 0.075 0.925 24 C -0.141 4.141 25 N -0.532 5.532 26 Si 0.727 3.273 27 H -0.202 1.202 28 H -0.211 1.211 29 H -0.202 1.202 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.251 0.749 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.149 0.851 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.052 0.948 44 H 0.063 0.937 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.674 11.681 25.437 27.999 hybrid contribution -0.669 -0.728 -0.300 1.033 sum -1.343 10.953 25.137 27.452 Atomic orbital electron populations 1.22269 0.93465 1.03837 1.02798 1.20836 0.95321 0.97124 0.84758 0.88477 1.44628 1.71002 1.13365 1.05727 1.17429 0.90450 0.90948 0.85210 1.20670 1.12078 0.93173 0.99407 1.20610 0.94057 0.99004 0.91322 1.20859 1.14174 0.93769 1.00530 1.18421 0.93470 0.90767 0.84873 1.86007 1.81806 1.37558 1.16199 1.23742 1.05040 0.93547 0.83704 1.20048 0.76286 0.79672 0.83024 1.93247 1.42072 1.88139 1.91975 1.93225 1.96051 1.75739 1.50473 1.93243 1.68090 1.58778 1.95364 1.19628 1.13959 1.01224 0.89924 1.20207 0.79868 0.86646 0.84476 1.90666 1.45784 1.19509 1.85557 1.48093 1.62668 1.13962 1.07944 1.21875 0.98418 0.83263 1.03605 1.19347 0.96418 0.92067 0.79593 1.21366 0.95817 1.30035 1.09656 0.92458 1.24943 0.96119 0.96296 0.96722 1.69918 1.22660 1.40671 1.19923 0.86546 0.82456 0.79940 0.78404 1.20203 1.21130 1.20173 0.90470 0.91435 0.91371 0.74911 0.85632 0.85736 0.86093 0.87273 0.87295 0.85063 0.93513 0.90223 0.91930 0.94785 0.93707 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 9.16 37.16 0.34 -1.69 16 2 C 0.13 1.80 1.84 -69.08 -0.13 1.68 16 3 H 0.10 1.16 5.81 -51.93 -0.30 0.85 16 4 N -0.72 -9.95 5.19 -53.31 -0.28 -10.23 16 5 C 0.27 3.28 6.63 -83.81 -0.56 2.72 16 6 C -0.23 -2.42 8.84 -39.35 -0.35 -2.76 16 7 C -0.03 -0.27 10.03 -39.63 -0.40 -0.67 16 8 C -0.27 -2.41 9.04 -39.39 -0.36 -2.76 16 9 C 0.17 1.82 6.68 -39.24 -0.26 1.56 16 10 O -0.30 -3.06 10.02 -19.42 -0.19 -3.25 16 11 C 0.02 0.11 4.70 37.15 0.17 0.28 16 12 C 0.46 3.54 3.32 37.15 0.12 3.66 16 13 F -0.17 -1.62 17.26 2.25 0.04 -1.58 16 14 F -0.17 -1.22 17.32 2.25 0.04 -1.18 16 15 F -0.17 -1.60 17.26 2.25 0.04 -1.57 16 16 C -0.22 -2.72 9.83 -39.24 -0.39 -3.11 16 17 C 0.50 9.83 6.97 -10.99 -0.08 9.75 16 18 O -0.54 -12.82 15.42 5.55 0.09 -12.74 16 19 N -0.60 -11.89 2.86 -182.96 -0.52 -12.41 16 20 C 0.07 1.04 9.85 59.85 0.59 1.63 16 21 C 0.24 6.20 5.16 -5.20 -0.03 6.17 16 22 C -0.53 -14.56 9.39 -34.44 -0.32 -14.88 16 23 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 24 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 25 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 26 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 30 H 0.08 0.88 5.83 -51.93 -0.30 0.58 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.71 7.79 -51.93 -0.40 0.30 16 33 H 0.41 6.24 7.73 -40.82 -0.32 5.92 16 34 H 0.13 1.17 6.19 -52.49 -0.32 0.84 16 35 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 36 H 0.12 0.73 6.29 -52.49 -0.33 0.40 16 37 H 0.11 0.47 7.66 -51.93 -0.40 0.07 16 38 H 0.11 0.46 7.66 -51.93 -0.40 0.06 16 39 H 0.13 1.59 8.06 -52.48 -0.42 1.16 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 1.19 8.03 -51.93 -0.42 0.77 16 42 H 0.06 0.71 4.58 -51.93 -0.24 0.48 16 43 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 44 H 0.04 1.29 7.37 -51.93 -0.38 0.91 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 LS Contribution 387.91 15.07 5.85 5.85 Total: -1.00 -32.97 387.91 -6.43 -39.40 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.47 Total: 3.45 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -1.73 Total: 3.21 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.06 Total: -47.98 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.11 Total: -15.99 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.12 Total: -4.32 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.97 -6.43 -39.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079029586.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.946 kcal (2) G-P(sol) polarization free energy of solvation -32.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds