Wall clock time and date at job start Tue Mar 31 2020 06:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46872 * 2 1 4 4 N 1.46500 * 109.46883 * 119.99365 * 2 1 3 5 5 C 1.39659 * 120.00296 * 274.99817 * 4 2 1 6 6 C 1.38974 * 120.04873 * 0.02562 * 5 4 2 7 7 C 1.38115 * 120.03637 * 179.97438 * 6 5 4 8 8 C 1.38217 * 120.13082 * 359.97438 * 7 6 5 9 9 C 1.38775 * 120.09137 * 0.02562 * 8 7 6 10 10 O 1.35898 * 120.01691 * 180.02562 * 9 8 7 11 11 C 1.42894 * 117.00146 * 0.02562 * 10 9 8 12 12 C 1.52992 * 109.47481 * 179.97438 * 11 10 9 13 13 F 1.39907 * 109.47081 * 60.00093 * 12 11 10 14 14 F 1.39903 * 109.47750 * 180.02562 * 12 11 10 15 15 F 1.39906 * 109.47302 * 300.00354 * 12 11 10 16 16 C 1.38615 * 119.96288 * 0.02562 * 9 8 7 17 17 C 1.50694 * 109.47192 * 239.99640 * 2 1 3 18 18 O 1.21283 * 120.00079 * 254.24905 * 17 2 1 19 19 N 1.34783 * 120.00147 * 74.25012 * 17 2 1 20 20 C 1.46503 * 119.99850 * 3.63205 * 19 17 2 21 21 C 1.46492 * 120.00072 * 183.63390 * 19 17 2 22 22 C 1.50701 * 109.47404 * 89.99997 * 21 19 17 23 23 H 1.08002 * 119.99534 * 359.97438 * 22 21 19 24 24 C 1.37878 * 119.99973 * 179.97438 * 22 21 19 25 25 N 1.31513 * 120.00127 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99661 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47055 * 59.99991 * 26 24 22 28 28 H 1.48495 * 109.47040 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47204 * 300.00214 * 26 24 22 30 30 H 1.09000 * 109.46873 * 56.00023 * 1 2 3 31 31 H 1.09000 * 109.46906 * 175.99936 * 1 2 3 32 32 H 1.08994 * 109.47181 * 295.99824 * 1 2 3 33 33 H 0.97009 * 119.99665 * 95.00600 * 4 2 1 34 34 H 1.07997 * 119.98033 * 0.25779 * 6 5 4 35 35 H 1.08002 * 119.93331 * 179.97438 * 7 6 5 36 36 H 1.07996 * 119.95249 * 179.97438 * 8 7 6 37 37 H 1.09000 * 109.47230 * 300.00444 * 11 10 9 38 38 H 1.09005 * 109.47062 * 59.99480 * 11 10 9 39 39 H 1.08006 * 120.06432 * 179.97438 * 16 9 8 40 40 H 1.09002 * 109.46706 * 84.66298 * 20 19 17 41 41 H 1.08999 * 109.47078 * 204.66681 * 20 19 17 42 42 H 1.09004 * 109.46925 * 324.67241 * 20 19 17 43 43 H 1.09002 * 109.47162 * 210.00022 * 21 19 17 44 44 H 1.09000 * 109.47278 * 329.99902 * 21 19 17 45 45 H 0.96997 * 119.99860 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1517 0.0063 2.3992 6 6 1.8211 1.3546 2.4628 7 6 1.9526 2.0433 3.6528 8 6 2.4125 1.3941 4.7830 9 6 2.7443 0.0478 4.7255 10 8 3.1958 -0.5891 5.8378 11 6 3.3038 0.1884 7.0319 12 6 3.8242 -0.6929 8.1691 13 9 5.0825 -1.2002 7.8276 14 9 3.9294 0.0682 9.3383 15 9 2.9360 -1.7528 8.3815 16 6 2.6147 -0.6468 3.5330 17 6 2.0324 -0.7105 -1.2304 18 8 2.5033 -1.8243 -1.1377 19 7 1.9583 -0.1081 -2.4338 20 6 1.4634 1.2670 -2.5355 21 6 2.3726 -0.8285 -3.6402 22 6 1.1905 -1.5641 -4.2170 23 1 0.2271 -1.5016 -3.7329 24 6 1.3391 -2.3170 -5.3625 25 7 2.5124 -2.3935 -5.9516 26 14 -0.1261 -3.2293 -6.0770 27 1 -1.1941 -2.2571 -6.4225 28 1 0.2939 -3.9595 -7.2999 29 1 -0.6427 -4.1971 -5.0760 30 1 -0.3633 0.5747 -0.8520 31 1 -0.3633 -1.0252 -0.0717 32 1 -0.3633 0.4504 0.9236 33 1 2.2491 -1.6317 1.1527 34 1 1.4567 1.8630 1.5824 35 1 1.6956 3.0913 3.7002 36 1 2.5147 1.9356 5.7118 37 1 3.9954 1.0145 6.8663 38 1 2.3234 0.5834 7.2982 39 1 2.8728 -1.6946 3.4864 40 1 2.2818 1.9624 -2.3485 41 1 1.0639 1.4364 -3.5353 42 1 0.6765 1.4254 -1.7980 43 1 2.7525 -0.1186 -4.3749 44 1 3.1561 -1.5425 -3.3861 45 1 2.6167 -2.9228 -6.7577 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079029586.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:18 Heat of formation + Delta-G solvation = -209.627372 kcal Electronic energy + Delta-G solvation = -31512.506111 eV Core-core repulsion = 26500.934569 eV Total energy + Delta-G solvation = -5011.571542 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.145 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -51.19316 -48.73581 -48.68401 -41.42054 -40.88799 -39.07649 -36.76616 -36.29847 -34.75544 -32.72392 -31.99892 -30.10091 -29.71092 -29.06100 -27.50393 -25.82213 -24.89691 -24.04153 -23.57873 -22.15161 -20.23309 -19.87820 -19.72417 -19.08876 -18.88413 -18.68758 -18.02182 -17.58957 -16.90104 -16.87539 -16.65725 -16.34853 -16.27746 -15.88044 -15.59051 -15.51238 -15.40631 -15.11649 -14.85120 -14.83184 -14.80975 -14.54176 -14.42769 -14.15826 -14.05817 -13.89099 -13.56122 -13.39365 -13.28087 -13.08119 -12.95962 -12.88950 -12.68179 -12.52288 -12.31766 -12.24602 -12.15720 -11.89225 -11.72714 -11.01966 -10.65408 -10.62600 -9.47072 -9.35815 -8.43446 -8.23708 -6.38721 0.53388 0.65551 1.20154 1.36319 1.40427 1.47483 1.68615 1.90622 2.14892 2.37816 2.61179 2.70256 2.88669 2.95090 3.06168 3.31108 3.52646 3.88490 3.93505 3.97989 4.04063 4.11469 4.27068 4.31819 4.35667 4.38866 4.61834 4.69051 4.72826 4.77534 4.89915 4.96463 5.00732 5.20953 5.26163 5.32770 5.35309 5.52415 5.60732 5.64498 5.79654 6.03305 6.21437 6.35868 6.62740 6.68210 6.74457 7.23254 7.38081 8.83167 Molecular weight = 360.14amu Principal moments of inertia in cm(-1) A = 0.021173 B = 0.001696 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.140930 B =16504.754388 C =17077.999380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.147 3.853 3 H 0.128 0.872 4 N -0.733 5.733 5 C 0.248 3.752 6 C -0.236 4.236 7 C -0.026 4.026 8 C -0.263 4.263 9 C 0.162 3.838 10 O -0.325 6.325 11 C 0.014 3.986 12 C 0.463 3.537 13 F -0.187 7.187 14 F -0.168 7.168 15 F -0.186 7.186 16 C -0.250 4.250 17 C 0.492 3.508 18 O -0.594 6.594 19 N -0.602 5.602 20 C 0.065 3.935 21 C 0.258 3.742 22 C -0.542 4.542 23 H 0.057 0.943 24 C 0.006 3.994 25 N -0.928 5.928 26 Si 0.967 3.033 27 H -0.257 1.257 28 H -0.281 1.281 29 H -0.279 1.279 30 H 0.090 0.910 31 H 0.042 0.958 32 H 0.095 0.905 33 H 0.400 0.600 34 H 0.142 0.858 35 H 0.161 0.839 36 H 0.156 0.844 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.114 0.886 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.099 0.901 43 H 0.026 0.974 44 H -0.004 1.004 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.042 15.826 27.397 31.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.038 3.962 3 H 0.146 0.854 4 N -0.361 5.361 5 C 0.144 3.856 6 C -0.258 4.258 7 C -0.045 4.045 8 C -0.284 4.284 9 C 0.117 3.883 10 O -0.239 6.239 11 C -0.062 4.062 12 C 0.409 3.591 13 F -0.169 7.169 14 F -0.150 7.150 15 F -0.168 7.168 16 C -0.273 4.273 17 C 0.279 3.721 18 O -0.476 6.476 19 N -0.332 5.332 20 C -0.077 4.077 21 C 0.137 3.863 22 C -0.581 4.581 23 H 0.075 0.925 24 C -0.193 4.193 25 N -0.568 5.568 26 Si 0.792 3.208 27 H -0.182 1.182 28 H -0.206 1.206 29 H -0.204 1.204 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.114 0.886 33 H 0.236 0.764 34 H 0.159 0.841 35 H 0.178 0.822 36 H 0.173 0.827 37 H 0.153 0.847 38 H 0.155 0.845 39 H 0.132 0.868 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.118 0.882 43 H 0.044 0.956 44 H 0.014 0.986 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.697 15.092 27.134 31.166 hybrid contribution 0.039 -1.728 -0.663 1.851 sum -2.658 13.364 26.471 29.772 Atomic orbital electron populations 1.22263 0.91810 1.02840 1.04789 1.20769 0.96220 0.97320 0.81873 0.85439 1.44648 1.72221 1.12910 1.06360 1.17597 0.91733 0.91894 0.84407 1.20943 1.11809 0.92158 1.00887 1.21053 0.92540 1.00511 0.90349 1.21279 1.12217 0.92762 1.02110 1.18520 0.93619 0.91632 0.84515 1.85958 1.81823 1.39030 1.17099 1.24047 1.07233 0.93200 0.81754 1.20294 0.75579 0.79526 0.83696 1.93220 1.43072 1.88438 1.92122 1.93234 1.95989 1.75422 1.50313 1.93218 1.68440 1.59630 1.95499 1.19707 1.15393 1.00950 0.91270 1.21297 0.78664 0.86252 0.85840 1.90631 1.48107 1.22266 1.86552 1.48086 1.62681 1.15872 1.06590 1.22214 1.00505 0.80342 1.04599 1.18796 0.94691 0.91333 0.81515 1.21669 0.96247 1.30350 1.09814 0.92456 1.25877 0.99019 0.97152 0.97236 1.70046 1.24786 1.41541 1.20416 0.85473 0.79210 0.78731 0.77436 1.18177 1.20583 1.20435 0.89123 0.93916 0.88592 0.76412 0.84058 0.82194 0.82669 0.84672 0.84524 0.86836 0.90689 0.90856 0.88235 0.95566 0.98596 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 9.16 71.98 0.66 -2.89 16 2 C 0.15 3.95 1.84 44.24 0.08 4.03 16 3 H 0.13 2.62 5.81 -2.38 -0.01 2.61 16 4 N -0.73 -20.53 5.19 -322.56 -1.68 -22.21 16 5 C 0.25 5.90 6.63 38.20 0.25 6.15 16 6 C -0.24 -4.15 8.84 22.42 0.20 -3.95 16 7 C -0.03 -0.34 10.03 22.24 0.22 -0.12 16 8 C -0.26 -3.60 9.04 22.39 0.20 -3.39 16 9 C 0.16 3.23 6.68 22.49 0.15 3.38 16 10 O -0.32 -6.20 10.02 -92.40 -0.93 -7.13 16 11 C 0.01 0.14 4.70 71.98 0.34 0.48 16 12 C 0.46 6.47 3.32 71.98 0.24 6.71 16 13 F -0.19 -3.43 17.26 44.97 0.78 -2.65 16 14 F -0.17 -2.06 17.32 44.97 0.78 -1.28 16 15 F -0.19 -3.35 17.26 44.97 0.78 -2.58 16 16 C -0.25 -6.15 9.83 22.49 0.22 -5.92 16 17 C 0.49 19.67 6.97 87.65 0.61 20.28 16 18 O -0.59 -30.19 15.42 -3.04 -0.05 -30.24 16 19 N -0.60 -24.29 2.86 -851.13 -2.43 -26.72 16 20 C 0.06 1.73 9.85 127.77 1.26 2.99 16 21 C 0.26 13.67 5.16 85.63 0.44 14.11 16 22 C -0.54 -30.55 9.39 25.60 0.24 -30.31 16 23 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 24 C 0.01 0.36 5.46 84.66 0.46 0.82 16 25 N -0.93 -55.83 13.29 21.45 0.28 -55.55 16 26 Si 0.97 44.29 29.54 68.60 2.03 46.31 16 27 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 28 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 29 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 30 H 0.09 1.76 5.83 -2.39 -0.01 1.74 16 31 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.10 1.65 7.79 -2.39 -0.02 1.63 16 33 H 0.40 13.05 7.73 -92.70 -0.72 12.33 16 34 H 0.14 1.96 6.19 -2.91 -0.02 1.95 16 35 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 36 H 0.16 0.99 6.29 -2.91 -0.02 0.97 16 37 H 0.14 0.66 7.66 -2.39 -0.02 0.64 16 38 H 0.14 0.62 7.66 -2.38 -0.02 0.60 16 39 H 0.11 3.04 8.06 -2.91 -0.02 3.01 16 40 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.07 2.07 8.03 -2.39 -0.02 2.05 16 42 H 0.10 1.90 4.58 -2.38 -0.01 1.89 16 43 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 44 H 0.00 -0.25 7.37 -2.39 -0.02 -0.27 16 45 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -77.59 387.91 5.48 -72.11 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.34 Total: 17.58 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 5.58 Total: 12.35 kcal Atomic # 7 Polarization: -100.65 SS G_CDS: -3.82 Total: -104.48 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -0.97 Total: -37.37 kcal Atomic # 9 Polarization: -8.84 SS G_CDS: 2.33 Total: -6.51 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -77.59 5.48 -72.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079029586.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.519 kcal (2) G-P(sol) polarization free energy of solvation -77.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds