Wall clock time and date at job start Tue Mar 31 2020 05:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47002 * 2 1 4 4 N 1.46507 * 109.47034 * 239.99974 * 2 1 3 5 5 C 1.39672 * 119.99644 * 85.00206 * 4 2 1 6 6 C 1.38918 * 120.07035 * 179.97438 * 5 4 2 7 7 C 1.38103 * 119.92232 * 180.26003 * 6 5 4 8 8 C 1.38291 * 120.07426 * 359.43747 * 7 6 5 9 9 C 1.50698 * 119.92195 * 180.27995 * 8 7 6 10 10 N 1.46494 * 109.47453 * 270.27536 * 9 8 7 11 11 C 1.46758 * 124.35443 * 269.73400 * 10 9 8 12 12 C 1.54655 * 105.38580 * 162.85214 * 11 10 9 13 13 C 1.54636 * 101.68411 * 25.76534 * 12 11 10 14 14 C 1.34426 * 124.34550 * 90.02694 * 10 9 8 15 15 O 1.21277 * 124.94004 * 0.43225 * 14 10 9 16 16 C 1.38281 * 120.14889 * 0.56232 * 8 7 6 17 17 C 1.38103 * 120.07737 * 359.72142 * 16 8 7 18 18 C 1.50701 * 109.46736 * 120.00343 * 2 1 3 19 19 O 1.21285 * 119.99999 * 120.00393 * 18 2 1 20 20 N 1.34778 * 119.99925 * 299.99846 * 18 2 1 21 21 C 1.46498 * 119.99791 * 359.97438 * 20 18 2 22 22 C 1.46501 * 120.00019 * 180.02562 * 20 18 2 23 23 C 1.50699 * 109.47453 * 89.99395 * 22 20 18 24 24 H 1.07997 * 119.99743 * 0.02562 * 23 22 20 25 25 C 1.37876 * 119.99985 * 179.97438 * 23 22 20 26 26 N 1.31517 * 119.99765 * 180.02562 * 25 23 22 27 27 Si 1.86802 * 120.00014 * 0.02562 * 25 23 22 28 28 H 1.48500 * 109.46947 * 90.00200 * 27 25 23 29 29 H 1.48498 * 109.47011 * 209.99911 * 27 25 23 30 30 H 1.48500 * 109.47087 * 330.00294 * 27 25 23 31 31 H 1.08994 * 109.47304 * 299.99990 * 1 2 3 32 32 H 1.09004 * 109.46822 * 59.99997 * 1 2 3 33 33 H 1.09001 * 109.47425 * 179.97438 * 1 2 3 34 34 H 0.97003 * 119.99787 * 264.99876 * 4 2 1 35 35 H 1.08002 * 120.03585 * 359.97438 * 6 5 4 36 36 H 1.08004 * 119.95970 * 179.72372 * 7 6 5 37 37 H 1.08999 * 109.47004 * 30.28589 * 9 8 7 38 38 H 1.09008 * 109.46525 * 150.28019 * 9 8 7 39 39 H 1.09002 * 110.24362 * 281.98086 * 11 10 9 40 40 H 1.08995 * 110.25026 * 43.97815 * 11 10 9 41 41 H 1.09003 * 111.19555 * 267.58988 * 12 11 10 42 42 H 1.08997 * 110.82412 * 143.77125 * 12 11 10 43 43 H 1.08997 * 110.48452 * 216.31096 * 13 12 11 44 44 H 1.08996 * 110.59581 * 93.72222 * 13 12 11 45 45 H 1.07998 * 119.96635 * 179.69477 * 16 8 7 46 46 H 1.08001 * 120.04036 * 179.97438 * 17 16 8 47 47 H 1.09004 * 109.46974 * 90.00276 * 21 20 18 48 48 H 1.09003 * 109.47273 * 209.99852 * 21 20 18 49 49 H 1.09003 * 109.47524 * 330.00091 * 21 20 18 50 50 H 1.08995 * 109.46638 * 209.99835 * 22 20 18 51 51 H 1.09002 * 109.46778 * 329.99303 * 22 20 18 52 52 H 0.97003 * 119.99584 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1517 0.0062 -2.3993 6 6 2.6151 -0.6470 -3.5344 7 6 2.7509 0.0463 -4.7210 8 6 2.4152 1.3864 -4.7830 9 6 2.5588 2.1380 -6.0813 10 7 3.9022 2.7162 -6.1649 11 6 4.2601 4.0535 -5.6777 12 6 5.8029 4.0515 -5.5696 13 6 6.1885 2.9761 -6.6118 14 6 4.9643 2.0920 -6.7029 15 8 4.9440 0.9819 -7.1906 16 6 1.9536 2.0396 -3.6551 17 6 1.8209 1.3538 -2.4637 18 6 2.0322 -0.7105 1.2305 19 8 2.7296 -1.6966 1.1192 20 7 1.7066 -0.2501 2.4546 21 6 0.8649 0.9414 2.5889 22 6 2.1953 -0.9404 3.6508 23 6 3.5227 -0.3566 4.0607 24 1 3.9585 0.4485 3.4878 25 6 4.1803 -0.8496 5.1678 26 7 5.3385 -0.3397 5.5258 27 14 3.4260 -2.2416 6.1591 28 1 3.8868 -3.5438 5.6139 29 1 3.8462 -2.1228 7.5784 30 1 1.9455 -2.1650 6.0730 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 2.2490 -1.6318 -1.1526 35 1 2.8732 -1.6947 -3.4877 36 1 3.1154 -0.4599 -5.6028 37 1 2.4048 1.4541 -6.9160 38 1 1.8168 2.9355 -6.1233 39 1 3.9299 4.8136 -6.3857 40 1 3.8148 4.2300 -4.6987 41 1 6.1275 3.7606 -4.5705 42 1 6.2117 5.0241 -5.8432 43 1 7.0488 2.4023 -6.2673 44 1 6.3996 3.4361 -7.5771 45 1 1.6970 3.0874 -3.7056 46 1 1.4607 1.8647 -1.5830 47 1 -0.1833 0.6439 2.6221 48 1 1.1227 1.4666 3.5087 49 1 1.0288 1.6002 1.7362 50 1 1.4774 -0.8152 4.4612 51 1 2.3166 -2.0017 3.4336 52 1 5.8013 -0.6867 6.3045 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079029622.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:40 Heat of formation + Delta-G solvation = -26.404990 kcal Electronic energy + Delta-G solvation = -31791.237756 eV Core-core repulsion = 27563.019829 eV Total energy + Delta-G solvation = -4228.217927 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.66251 -39.96887 -38.96955 -36.62968 -35.93269 -35.15214 -33.48231 -32.62775 -31.39972 -30.73906 -29.12278 -28.14292 -27.82215 -26.41683 -25.58460 -23.99014 -23.03939 -22.14756 -21.97237 -20.85549 -19.58629 -18.82403 -17.78310 -17.01741 -16.99547 -16.90388 -16.45085 -15.87813 -15.65745 -15.28978 -15.04713 -14.85031 -14.41922 -14.07583 -14.03342 -13.92059 -13.65794 -13.58277 -13.46210 -13.28251 -13.09121 -12.93984 -12.74034 -12.46856 -12.43386 -12.23521 -12.09948 -11.82211 -11.77024 -11.72277 -11.59783 -11.34289 -11.30732 -11.00074 -10.82517 -10.58816 -10.22300 -10.19480 -9.89455 -9.61767 -9.15236 -8.96389 -8.90649 -8.64928 -7.85658 -7.35507 -6.14547 -4.14155 1.45305 1.48857 2.41749 2.88044 3.13348 3.21566 3.25736 3.30871 3.33067 3.83117 3.93197 4.06899 4.15901 4.33921 4.48792 4.68404 4.73413 4.76978 4.80674 4.95256 4.99897 5.09180 5.12902 5.16044 5.19121 5.20422 5.35019 5.37212 5.39073 5.47008 5.48762 5.55053 5.64116 5.65566 5.67002 5.72969 5.81263 5.98062 6.03738 6.15479 6.27825 6.32540 6.38576 6.57412 6.63733 6.81956 6.87425 6.92812 7.17393 7.35465 7.53214 7.79332 7.98659 8.08389 8.38790 8.75124 8.88580 9.44905 10.98753 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.013881 B = 0.002006 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.723928 B =13958.004715 C =14744.326808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.131 3.869 3 H 0.100 0.900 4 N -0.723 5.723 5 C 0.236 3.764 6 C -0.199 4.199 7 C -0.045 4.045 8 C -0.183 4.183 9 C 0.176 3.824 10 N -0.614 5.614 11 C 0.101 3.899 12 C -0.133 4.133 13 C -0.157 4.157 14 C 0.516 3.484 15 O -0.533 6.533 16 C -0.054 4.054 17 C -0.207 4.207 18 C 0.504 3.496 19 O -0.535 6.535 20 N -0.591 5.591 21 C 0.078 3.922 22 C 0.216 3.784 23 C -0.531 4.531 24 H 0.074 0.926 25 C 0.073 3.927 26 N -0.896 5.896 27 Si 0.877 3.123 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.266 1.266 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.409 0.591 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.116 0.884 46 H 0.121 0.879 47 H 0.052 0.948 48 H 0.078 0.922 49 H 0.062 0.938 50 H 0.032 0.968 51 H 0.037 0.963 52 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.202 12.020 -22.434 27.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.021 3.979 3 H 0.118 0.882 4 N -0.352 5.352 5 C 0.131 3.869 6 C -0.222 4.222 7 C -0.065 4.065 8 C -0.186 4.186 9 C 0.055 3.945 10 N -0.348 5.348 11 C -0.022 4.022 12 C -0.171 4.171 13 C -0.197 4.197 14 C 0.304 3.696 15 O -0.410 6.410 16 C -0.073 4.073 17 C -0.230 4.230 18 C 0.289 3.711 19 O -0.412 6.412 20 N -0.323 5.323 21 C -0.066 4.066 22 C 0.095 3.905 23 C -0.570 4.570 24 H 0.092 0.908 25 C -0.130 4.130 26 N -0.534 5.534 27 Si 0.704 3.296 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.191 1.191 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.247 0.753 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.134 0.866 46 H 0.139 0.861 47 H 0.070 0.930 48 H 0.097 0.903 49 H 0.080 0.920 50 H 0.050 0.950 51 H 0.055 0.945 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.842 10.965 -22.400 26.461 hybrid contribution -0.079 -0.890 0.897 1.266 sum -8.920 10.075 -21.503 25.367 Atomic orbital electron populations 1.22472 0.93888 1.03452 1.03486 1.20735 0.94925 0.97397 0.84821 0.88226 1.44550 1.71774 1.13084 1.05798 1.17875 0.91967 0.91378 0.85709 1.20597 1.08784 1.00473 0.92305 1.20801 0.95111 0.93543 0.97004 1.19777 1.08109 0.94796 0.95918 1.20118 0.82002 0.96922 0.95429 1.48427 1.09666 1.16809 1.59922 1.22118 0.95791 0.84038 1.00260 1.22629 0.94533 0.99718 1.00175 1.22340 0.97796 0.97981 1.01566 1.20913 0.85684 0.86198 0.76788 1.90712 1.85079 1.19241 1.45946 1.20664 0.96428 0.98563 0.91656 1.20626 1.10313 0.93146 0.98869 1.20294 0.80982 0.85287 0.84505 1.90672 1.37642 1.26917 1.85974 1.47762 1.49706 1.28318 1.06515 1.21883 0.93672 0.87834 1.03167 1.19706 0.95457 0.93702 0.81602 1.21294 1.03118 1.20437 1.12123 0.90788 1.24864 0.94631 0.96468 0.97038 1.69896 1.14739 1.42227 1.26533 0.86840 0.79982 0.83226 0.79567 1.19896 1.20978 1.19064 0.89999 0.91448 0.91898 0.75312 0.86193 0.86087 0.89661 0.89962 0.91097 0.90236 0.89750 0.89234 0.88111 0.88013 0.86591 0.86081 0.92967 0.90303 0.91954 0.94986 0.94510 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 9.06 37.16 0.34 -1.60 16 2 C 0.13 1.87 1.87 -69.08 -0.13 1.74 16 3 H 0.10 1.33 5.74 -51.93 -0.30 1.04 16 4 N -0.72 -10.51 5.12 -53.28 -0.27 -10.79 16 5 C 0.24 3.17 6.64 -83.78 -0.56 2.61 16 6 C -0.20 -2.61 9.90 -39.38 -0.39 -3.00 16 7 C -0.05 -0.56 9.69 -39.61 -0.38 -0.94 16 8 C -0.18 -1.95 5.47 -104.59 -0.57 -2.52 16 9 C 0.18 1.54 6.05 -5.20 -0.03 1.50 16 10 N -0.61 -5.43 2.92 -173.68 -0.51 -5.94 16 11 C 0.10 0.57 7.35 -3.03 -0.02 0.55 16 12 C -0.13 -0.69 7.19 -25.00 -0.18 -0.87 16 13 C -0.16 -1.11 6.86 -26.74 -0.18 -1.29 16 14 C 0.52 5.66 8.02 -10.86 -0.09 5.58 16 15 O -0.53 -8.02 17.59 5.56 0.10 -7.92 16 16 C -0.05 -0.54 9.69 -39.61 -0.38 -0.93 16 17 C -0.21 -2.42 8.85 -39.38 -0.35 -2.77 16 18 C 0.50 9.85 7.14 -10.98 -0.08 9.77 16 19 O -0.54 -12.75 15.42 5.55 0.09 -12.67 16 20 N -0.59 -11.57 2.86 -182.95 -0.52 -12.10 16 21 C 0.08 1.09 8.80 59.85 0.53 1.62 16 22 C 0.22 5.14 4.23 -5.19 -0.02 5.12 16 23 C -0.53 -15.05 9.94 -34.44 -0.34 -15.39 16 24 H 0.07 2.31 8.06 -52.49 -0.42 1.88 16 25 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 26 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 27 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 16 28 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 29 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 30 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 31 H 0.08 0.80 4.53 -51.93 -0.24 0.56 16 32 H 0.07 0.66 7.71 -51.93 -0.40 0.26 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.41 6.36 7.80 -40.82 -0.32 6.04 16 35 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.12 1.52 8.06 -52.48 -0.42 1.09 16 37 H 0.09 0.81 7.87 -51.93 -0.41 0.40 16 38 H 0.08 0.51 8.08 -51.92 -0.42 0.09 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.12 1.28 6.12 -52.49 -0.32 0.96 16 47 H 0.05 0.59 6.95 -51.93 -0.36 0.22 16 48 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 49 H 0.06 0.71 6.01 -51.93 -0.31 0.39 16 50 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 51 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 52 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 418.70 15.07 6.31 6.31 Total: -1.00 -36.71 418.70 -9.69 -46.40 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -8.04 Total: 5.56 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -2.94 Total: 1.16 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -0.53 Total: -55.49 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: 0.18 Total: -20.59 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -36.71 -9.69 -46.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079029622.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.994 kcal (2) G-P(sol) polarization free energy of solvation -36.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds