Wall clock time and date at job start Tue Mar 31 2020 05:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47002 * 2 1 4 4 N 1.46507 * 109.47034 * 239.99974 * 2 1 3 5 5 C 1.39672 * 119.99644 * 85.00206 * 4 2 1 6 6 C 1.38918 * 120.07035 * 179.97438 * 5 4 2 7 7 C 1.38103 * 119.92232 * 180.26003 * 6 5 4 8 8 C 1.38291 * 120.07426 * 359.43747 * 7 6 5 9 9 C 1.50698 * 119.92195 * 180.27995 * 8 7 6 10 10 N 1.46494 * 109.47453 * 270.27536 * 9 8 7 11 11 C 1.46758 * 124.35443 * 269.73400 * 10 9 8 12 12 C 1.54655 * 105.38580 * 162.85214 * 11 10 9 13 13 C 1.54636 * 101.68411 * 25.76534 * 12 11 10 14 14 C 1.34426 * 124.34550 * 90.02694 * 10 9 8 15 15 O 1.21277 * 124.94004 * 0.43225 * 14 10 9 16 16 C 1.38281 * 120.14889 * 0.56232 * 8 7 6 17 17 C 1.38103 * 120.07737 * 359.72142 * 16 8 7 18 18 C 1.50701 * 109.46736 * 120.00343 * 2 1 3 19 19 O 1.21285 * 119.99999 * 120.00393 * 18 2 1 20 20 N 1.34778 * 119.99925 * 299.99846 * 18 2 1 21 21 C 1.46498 * 119.99791 * 359.97438 * 20 18 2 22 22 C 1.46501 * 120.00019 * 180.02562 * 20 18 2 23 23 C 1.50699 * 109.47453 * 89.99395 * 22 20 18 24 24 H 1.07997 * 119.99743 * 0.02562 * 23 22 20 25 25 C 1.37876 * 119.99985 * 179.97438 * 23 22 20 26 26 N 1.31517 * 119.99765 * 180.02562 * 25 23 22 27 27 Si 1.86802 * 120.00014 * 0.02562 * 25 23 22 28 28 H 1.48500 * 109.46947 * 90.00200 * 27 25 23 29 29 H 1.48498 * 109.47011 * 209.99911 * 27 25 23 30 30 H 1.48500 * 109.47087 * 330.00294 * 27 25 23 31 31 H 1.08994 * 109.47304 * 299.99990 * 1 2 3 32 32 H 1.09004 * 109.46822 * 59.99997 * 1 2 3 33 33 H 1.09001 * 109.47425 * 179.97438 * 1 2 3 34 34 H 0.97003 * 119.99787 * 264.99876 * 4 2 1 35 35 H 1.08002 * 120.03585 * 359.97438 * 6 5 4 36 36 H 1.08004 * 119.95970 * 179.72372 * 7 6 5 37 37 H 1.08999 * 109.47004 * 30.28589 * 9 8 7 38 38 H 1.09008 * 109.46525 * 150.28019 * 9 8 7 39 39 H 1.09002 * 110.24362 * 281.98086 * 11 10 9 40 40 H 1.08995 * 110.25026 * 43.97815 * 11 10 9 41 41 H 1.09003 * 111.19555 * 267.58988 * 12 11 10 42 42 H 1.08997 * 110.82412 * 143.77125 * 12 11 10 43 43 H 1.08997 * 110.48452 * 216.31096 * 13 12 11 44 44 H 1.08996 * 110.59581 * 93.72222 * 13 12 11 45 45 H 1.07998 * 119.96635 * 179.69477 * 16 8 7 46 46 H 1.08001 * 120.04036 * 179.97438 * 17 16 8 47 47 H 1.09004 * 109.46974 * 90.00276 * 21 20 18 48 48 H 1.09003 * 109.47273 * 209.99852 * 21 20 18 49 49 H 1.09003 * 109.47524 * 330.00091 * 21 20 18 50 50 H 1.08995 * 109.46638 * 209.99835 * 22 20 18 51 51 H 1.09002 * 109.46778 * 329.99303 * 22 20 18 52 52 H 0.97003 * 119.99584 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1517 0.0062 -2.3993 6 6 2.6151 -0.6470 -3.5344 7 6 2.7509 0.0463 -4.7210 8 6 2.4152 1.3864 -4.7830 9 6 2.5588 2.1380 -6.0813 10 7 3.9022 2.7162 -6.1649 11 6 4.2601 4.0535 -5.6777 12 6 5.8029 4.0515 -5.5696 13 6 6.1885 2.9761 -6.6118 14 6 4.9643 2.0920 -6.7029 15 8 4.9440 0.9819 -7.1906 16 6 1.9536 2.0396 -3.6551 17 6 1.8209 1.3538 -2.4637 18 6 2.0322 -0.7105 1.2305 19 8 2.7296 -1.6966 1.1192 20 7 1.7066 -0.2501 2.4546 21 6 0.8649 0.9414 2.5889 22 6 2.1953 -0.9404 3.6508 23 6 3.5227 -0.3566 4.0607 24 1 3.9585 0.4485 3.4878 25 6 4.1803 -0.8496 5.1678 26 7 5.3385 -0.3397 5.5258 27 14 3.4260 -2.2416 6.1591 28 1 3.8868 -3.5438 5.6139 29 1 3.8462 -2.1228 7.5784 30 1 1.9455 -2.1650 6.0730 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 2.2490 -1.6318 -1.1526 35 1 2.8732 -1.6947 -3.4877 36 1 3.1154 -0.4599 -5.6028 37 1 2.4048 1.4541 -6.9160 38 1 1.8168 2.9355 -6.1233 39 1 3.9299 4.8136 -6.3857 40 1 3.8148 4.2300 -4.6987 41 1 6.1275 3.7606 -4.5705 42 1 6.2117 5.0241 -5.8432 43 1 7.0488 2.4023 -6.2673 44 1 6.3996 3.4361 -7.5771 45 1 1.6970 3.0874 -3.7056 46 1 1.4607 1.8647 -1.5830 47 1 -0.1833 0.6439 2.6221 48 1 1.1227 1.4666 3.5087 49 1 1.0288 1.6002 1.7362 50 1 1.4774 -0.8152 4.4612 51 1 2.3166 -2.0017 3.4336 52 1 5.8013 -0.6867 6.3045 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079029622.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:38 Heat of formation + Delta-G solvation = -51.374484 kcal Electronic energy + Delta-G solvation = -31792.320514 eV Core-core repulsion = 27563.019829 eV Total energy + Delta-G solvation = -4229.300685 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.200 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.46249 -41.20074 -40.06475 -37.50963 -37.00048 -36.71176 -34.84706 -34.11941 -32.42385 -31.71362 -30.39849 -29.49258 -28.38778 -27.70792 -26.44959 -25.42580 -24.14621 -23.30407 -22.67129 -21.90708 -20.33220 -20.20221 -19.18452 -18.90154 -17.77884 -17.64952 -17.60801 -17.12187 -16.69864 -16.55098 -16.30854 -15.99471 -15.65810 -15.13733 -15.08896 -14.86938 -14.65899 -14.57752 -14.49981 -14.39134 -14.14861 -13.93965 -13.86405 -13.72223 -13.48279 -13.40680 -13.29690 -12.94544 -12.84868 -12.70015 -12.65669 -12.49206 -12.31892 -12.22234 -12.03119 -11.82924 -11.77884 -11.70270 -11.14360 -10.86337 -10.77427 -10.67315 -9.83540 -9.65946 -9.47358 -8.37065 -8.35740 -6.42454 0.53830 0.56452 1.30627 1.34995 1.43082 1.61331 1.64077 1.99192 2.21752 2.28307 2.56182 2.97633 3.02133 3.47502 3.48994 3.68759 3.85311 3.98163 4.01050 4.10560 4.10991 4.16634 4.24114 4.29069 4.35310 4.52468 4.57119 4.62498 4.66434 4.74463 4.74691 4.77341 4.78783 4.82660 4.86917 4.92437 4.93875 4.98088 5.10677 5.13904 5.25362 5.25617 5.37199 5.42211 5.47398 5.53390 5.63799 5.75726 5.94085 6.18571 6.22547 6.32565 6.58296 6.59492 6.68781 7.15516 7.20932 7.29057 8.80005 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.013881 B = 0.002006 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.723928 B =13958.004715 C =14744.326808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.144 3.856 3 H 0.115 0.885 4 N -0.735 5.735 5 C 0.218 3.782 6 C -0.217 4.217 7 C -0.060 4.060 8 C -0.178 4.178 9 C 0.174 3.826 10 N -0.613 5.613 11 C 0.096 3.904 12 C -0.125 4.125 13 C -0.154 4.154 14 C 0.498 3.502 15 O -0.589 6.589 16 C -0.045 4.045 17 C -0.208 4.208 18 C 0.492 3.508 19 O -0.591 6.591 20 N -0.598 5.598 21 C 0.068 3.932 22 C 0.223 3.777 23 C -0.537 4.537 24 H 0.028 0.972 25 C 0.010 3.990 26 N -0.945 5.945 27 Si 0.948 3.052 28 H -0.280 1.280 29 H -0.275 1.275 30 H -0.234 1.234 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.399 0.601 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.070 0.930 38 H 0.119 0.881 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.119 0.881 43 H 0.093 0.907 44 H 0.122 0.878 45 H 0.155 0.845 46 H 0.140 0.860 47 H 0.091 0.909 48 H 0.069 0.931 49 H 0.092 0.908 50 H 0.056 0.944 51 H 0.017 0.983 52 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.091 15.054 -22.579 29.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.035 3.965 3 H 0.132 0.868 4 N -0.364 5.364 5 C 0.114 3.886 6 C -0.239 4.239 7 C -0.080 4.080 8 C -0.181 4.181 9 C 0.053 3.947 10 N -0.345 5.345 11 C -0.026 4.026 12 C -0.163 4.163 13 C -0.194 4.194 14 C 0.287 3.713 15 O -0.470 6.470 16 C -0.063 4.063 17 C -0.230 4.230 18 C 0.280 3.720 19 O -0.472 6.472 20 N -0.329 5.329 21 C -0.073 4.073 22 C 0.100 3.900 23 C -0.575 4.575 24 H 0.046 0.954 25 C -0.188 4.188 26 N -0.585 5.585 27 Si 0.771 3.229 28 H -0.206 1.206 29 H -0.200 1.200 30 H -0.157 1.157 31 H 0.120 0.880 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.235 0.765 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.088 0.912 38 H 0.137 0.863 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.138 0.862 43 H 0.112 0.888 44 H 0.140 0.860 45 H 0.173 0.827 46 H 0.157 0.843 47 H 0.109 0.891 48 H 0.088 0.912 49 H 0.111 0.889 50 H 0.074 0.926 51 H 0.035 0.965 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.790 14.101 -22.553 29.094 hybrid contribution 0.893 -1.734 0.832 2.120 sum -10.897 12.367 -21.721 27.267 Atomic orbital electron populations 1.22443 0.90816 1.03513 1.05475 1.20748 0.96967 0.96745 0.81993 0.86780 1.44610 1.72742 1.12727 1.06304 1.18035 0.93125 0.92344 0.85109 1.20646 1.09778 1.00456 0.93046 1.20832 0.96047 0.94820 0.96284 1.20040 1.06770 0.94000 0.97261 1.20206 0.83001 0.97764 0.93743 1.48585 1.09190 1.17844 1.58857 1.22423 0.96034 0.82642 1.01459 1.22667 0.94421 1.00297 0.98912 1.22379 0.95722 0.97890 1.03379 1.21684 0.87441 0.85938 0.76208 1.90675 1.86115 1.21730 1.48488 1.21029 0.94808 1.00141 0.90367 1.20921 1.09687 0.92227 1.00206 1.21327 0.79952 0.84820 0.85924 1.90637 1.40126 1.29556 1.86918 1.47851 1.50028 1.29634 1.05364 1.22274 0.94667 0.86205 1.04197 1.19378 0.93802 0.92745 0.84043 1.21541 1.05158 1.19271 1.11545 0.95395 1.25873 0.95049 0.99414 0.98491 1.70052 1.16628 1.44293 1.27560 0.85711 0.80864 0.78581 0.77753 1.20556 1.19967 1.15709 0.87988 0.89278 0.92886 0.76535 0.87130 0.87448 0.91199 0.86285 0.88331 0.89188 0.90743 0.86242 0.88810 0.86045 0.82718 0.84274 0.89118 0.91177 0.88924 0.92571 0.96469 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 9.06 71.98 0.65 -2.47 16 2 C 0.14 3.92 1.87 44.24 0.08 4.01 16 3 H 0.11 2.75 5.74 -2.39 -0.01 2.74 16 4 N -0.73 -21.54 5.12 -322.49 -1.65 -23.19 16 5 C 0.22 5.78 6.64 38.22 0.25 6.03 16 6 C -0.22 -6.00 9.90 22.40 0.22 -5.78 16 7 C -0.06 -1.56 9.69 22.25 0.22 -1.34 16 8 C -0.18 -3.54 5.47 -19.84 -0.11 -3.64 16 9 C 0.17 2.70 6.05 85.63 0.52 3.22 16 10 N -0.61 -9.72 2.92 -822.00 -2.40 -12.11 16 11 C 0.10 0.74 7.35 86.89 0.64 1.37 16 12 C -0.13 -0.94 7.19 31.72 0.23 -0.71 16 13 C -0.15 -1.99 6.86 30.59 0.21 -1.78 16 14 C 0.50 10.90 8.02 87.90 0.70 11.60 16 15 O -0.59 -18.78 17.59 -3.02 -0.05 -18.83 16 16 C -0.04 -0.75 9.69 22.25 0.22 -0.53 16 17 C -0.21 -4.32 8.85 22.40 0.20 -4.12 16 18 C 0.49 19.27 7.14 87.66 0.63 19.89 16 19 O -0.59 -29.39 15.42 -3.05 -0.05 -29.44 16 20 N -0.60 -22.88 2.86 -851.12 -2.43 -25.31 16 21 C 0.07 1.69 8.80 127.77 1.12 2.82 16 22 C 0.22 10.54 4.23 85.63 0.36 10.90 16 23 C -0.54 -31.22 9.94 25.60 0.25 -30.97 16 24 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 25 C 0.01 0.57 5.47 84.65 0.46 1.04 16 26 N -0.95 -59.69 13.96 21.45 0.30 -59.39 16 27 Si 0.95 44.06 27.47 68.60 1.88 45.94 16 28 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 29 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 30 H -0.23 -9.60 6.54 99.48 0.65 -8.95 16 31 H 0.10 1.51 4.53 -2.39 -0.01 1.50 16 32 H 0.09 1.36 7.71 -2.38 -0.02 1.34 16 33 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.40 13.17 7.80 -92.71 -0.72 12.45 16 35 H 0.11 3.11 8.06 -2.91 -0.02 3.08 16 36 H 0.11 2.98 8.06 -2.91 -0.02 2.96 16 37 H 0.07 1.32 7.87 -2.39 -0.02 1.30 16 38 H 0.12 0.98 8.08 -2.38 -0.02 0.96 16 39 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 43 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 46 H 0.14 2.34 6.12 -2.91 -0.02 2.33 16 47 H 0.09 1.60 6.95 -2.38 -0.02 1.59 16 48 H 0.07 1.89 8.07 -2.39 -0.02 1.87 16 49 H 0.09 1.74 6.01 -2.39 -0.01 1.72 16 50 H 0.06 2.39 7.13 -2.39 -0.02 2.38 16 51 H 0.02 0.88 6.85 -2.39 -0.02 0.87 16 52 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -87.93 418.70 2.62 -85.30 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.16 Total: 27.49 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 6.86 Total: 9.54 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -6.18 Total: -120.01 kcal Atomic # 8 Polarization: -48.17 SS G_CDS: -0.10 Total: -48.27 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.94 kcal Total: -87.93 2.62 -85.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079029622.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.927 kcal (2) G-P(sol) polarization free energy of solvation -87.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds