Wall clock time and date at job start Tue Mar 31 2020 05:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47543 * 2 1 4 4 N 1.46501 * 109.46902 * 120.00211 * 2 1 3 5 5 C 1.39674 * 120.00205 * 274.99846 * 4 2 1 6 6 C 1.38910 * 120.07586 * 180.02562 * 5 4 2 7 7 C 1.38107 * 119.92471 * 179.97438 * 6 5 4 8 8 C 1.38285 * 120.07241 * 0.27192 * 7 6 5 9 9 C 1.50703 * 119.92531 * 179.70251 * 8 7 6 10 10 N 1.46503 * 109.46963 * 89.99697 * 9 8 7 11 11 C 1.46755 * 124.35271 * 269.72901 * 10 9 8 12 12 C 1.54658 * 105.38572 * 162.85718 * 11 10 9 13 13 C 1.54627 * 101.68396 * 25.76330 * 12 11 10 14 14 C 1.34423 * 124.34594 * 90.02869 * 10 9 8 15 15 O 1.21286 * 124.93914 * 0.42548 * 14 10 9 16 16 C 1.38292 * 120.15075 * 359.44768 * 8 7 6 17 17 C 1.38105 * 120.07416 * 0.55289 * 16 8 7 18 18 C 1.50700 * 109.47140 * 240.00176 * 2 1 3 19 19 O 1.21281 * 119.99887 * 245.87489 * 18 2 1 20 20 N 1.34773 * 120.00020 * 65.87685 * 18 2 1 21 21 C 1.46501 * 120.00034 * 4.64460 * 20 18 2 22 22 C 1.46502 * 120.00011 * 184.64688 * 20 18 2 23 23 C 1.50703 * 109.47068 * 89.99604 * 22 20 18 24 24 H 1.07994 * 120.00278 * 0.02562 * 23 22 20 25 25 C 1.37876 * 119.99518 * 179.97438 * 23 22 20 26 26 N 1.31516 * 120.00576 * 0.02562 * 25 23 22 27 27 Si 1.86809 * 119.99669 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.46905 * 359.97438 * 27 25 23 29 29 H 1.48496 * 109.47332 * 120.00187 * 27 25 23 30 30 H 1.48507 * 109.46753 * 240.00119 * 27 25 23 31 31 H 1.09000 * 109.47296 * 189.35979 * 1 2 3 32 32 H 1.09006 * 109.46816 * 309.36324 * 1 2 3 33 33 H 1.09006 * 109.46801 * 69.35602 * 1 2 3 34 34 H 0.97004 * 119.99879 * 95.00270 * 4 2 1 35 35 H 1.08000 * 120.03853 * 359.97438 * 6 5 4 36 36 H 1.08000 * 119.96428 * 179.97438 * 7 6 5 37 37 H 1.08993 * 109.47282 * 210.00483 * 9 8 7 38 38 H 1.09000 * 109.46936 * 330.00274 * 9 8 7 39 39 H 1.08999 * 110.24807 * 281.98613 * 11 10 9 40 40 H 1.09006 * 110.24649 * 43.98417 * 11 10 9 41 41 H 1.09002 * 111.18904 * 267.59338 * 12 11 10 42 42 H 1.08993 * 110.85886 * 143.79068 * 12 11 10 43 43 H 1.09003 * 110.49078 * 216.31312 * 13 12 11 44 44 H 1.09000 * 110.60052 * 93.72548 * 13 12 11 45 45 H 1.07997 * 119.96346 * 180.24914 * 16 8 7 46 46 H 1.07996 * 120.03517 * 179.70135 * 17 16 8 47 47 H 1.08995 * 109.47157 * 95.81751 * 21 20 18 48 48 H 1.09003 * 109.46685 * 215.82184 * 21 20 18 49 49 H 1.08997 * 109.47023 * 335.81624 * 21 20 18 50 50 H 1.08997 * 109.47029 * 209.99732 * 22 20 18 51 51 H 1.09002 * 109.47190 * 329.99825 * 22 20 18 52 52 H 0.97000 * 119.99826 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1517 0.0060 2.3994 6 6 2.6150 -0.6472 3.5344 7 6 2.7463 0.0449 4.7223 8 6 2.4116 1.3852 4.7840 9 6 2.5498 2.1355 6.0837 10 7 3.8913 2.7176 6.1713 11 6 5.0504 2.0411 6.7650 12 6 6.2860 2.8147 6.2483 13 6 5.6858 4.2117 5.9673 14 6 4.2173 3.9424 5.7233 15 8 3.4461 4.7186 5.2001 16 6 1.9555 2.0400 3.6546 17 6 1.8219 1.3540 2.4634 18 6 2.0323 -0.7104 -1.2305 19 8 2.6392 -1.7548 -1.1224 20 7 1.8072 -0.1850 -2.4510 21 6 1.1646 1.1255 -2.5772 22 6 2.2051 -0.9244 -3.6515 23 6 1.0676 -1.8061 -4.0985 24 1 0.1409 -1.8145 -3.5441 25 6 1.2098 -2.6011 -5.2159 26 7 2.3382 -2.5905 -5.8914 27 14 -0.2005 -3.6936 -5.7704 28 1 -1.3508 -3.5238 -4.8468 29 1 -0.6096 -3.3135 -7.1464 30 1 0.2382 -5.1123 -5.7585 31 1 -0.3634 -1.0140 0.1671 32 1 -0.3633 0.6518 0.7946 33 1 -0.3633 0.3623 -0.9617 34 1 2.2490 -1.6319 1.1525 35 1 2.8724 -1.6951 3.4879 36 1 3.1060 -0.4625 5.6052 37 1 1.8052 2.9304 6.1252 38 1 2.3961 1.4499 6.9171 39 1 4.9993 2.0897 7.8527 40 1 5.0915 1.0031 6.4346 41 1 6.6773 2.3672 5.3346 42 1 7.0584 2.8691 7.0154 43 1 6.1447 4.6532 5.0826 44 1 5.8156 4.8655 6.8297 45 1 1.6989 3.0878 3.7052 46 1 1.4611 1.8648 1.5830 47 1 1.9281 1.8956 -2.6868 48 1 0.5163 1.1293 -3.4535 49 1 0.5711 1.3265 -1.6853 50 1 2.4533 -0.2207 -4.4460 51 1 3.0758 -1.5405 -3.4269 52 1 2.4382 -3.1502 -6.6773 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079029624.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:45 Heat of formation + Delta-G solvation = -29.917998 kcal Electronic energy + Delta-G solvation = -31712.653533 eV Core-core repulsion = 27484.283271 eV Total energy + Delta-G solvation = -4228.370262 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.69411 -39.90442 -38.91614 -36.65859 -35.89587 -34.99452 -33.48974 -32.67980 -31.33991 -30.74831 -28.99459 -27.86767 -27.67366 -26.21001 -25.57622 -23.99845 -23.11686 -22.37571 -21.93140 -20.95466 -19.61703 -18.72822 -17.72822 -17.06503 -16.95280 -16.59607 -16.30260 -15.86403 -15.61457 -15.35303 -14.87957 -14.77671 -14.48860 -14.16572 -14.03544 -14.02631 -13.69322 -13.59869 -13.37486 -13.27430 -13.08093 -12.86382 -12.64807 -12.50456 -12.19709 -12.10421 -12.05336 -11.81579 -11.75643 -11.53794 -11.40756 -11.34487 -11.22093 -10.91326 -10.80929 -10.64410 -10.22212 -10.20120 -9.91459 -9.67630 -9.03290 -8.99321 -8.92112 -8.49768 -7.75452 -7.35056 -6.10332 -4.15656 1.44083 1.47566 2.38059 2.84865 3.21323 3.25525 3.30559 3.33523 3.37990 3.89681 3.97803 4.02464 4.10746 4.38859 4.43301 4.65093 4.74144 4.78433 4.85224 4.97477 5.00947 5.07820 5.14859 5.15711 5.23561 5.24777 5.31555 5.34866 5.42983 5.43941 5.47537 5.58072 5.59909 5.68714 5.76598 5.83459 5.87605 6.03954 6.11151 6.24169 6.29638 6.32051 6.39445 6.62016 6.81762 6.89700 6.96255 7.34027 7.37617 7.44748 7.82826 7.85608 7.95050 8.15732 8.28619 8.78967 8.94502 9.49627 10.97787 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.020326 B = 0.001801 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.242975 B =15543.246510 C =15691.942064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.129 3.871 3 H 0.096 0.904 4 N -0.723 5.723 5 C 0.236 3.764 6 C -0.202 4.202 7 C -0.054 4.054 8 C -0.184 4.184 9 C 0.176 3.824 10 N -0.614 5.614 11 C 0.101 3.899 12 C -0.132 4.132 13 C -0.157 4.157 14 C 0.516 3.484 15 O -0.532 6.532 16 C -0.045 4.045 17 C -0.206 4.206 18 C 0.503 3.497 19 O -0.540 6.540 20 N -0.595 5.595 21 C 0.066 3.934 22 C 0.244 3.756 23 C -0.528 4.528 24 H 0.058 0.942 25 C 0.061 3.939 26 N -0.893 5.893 27 Si 0.899 3.101 28 H -0.273 1.273 29 H -0.283 1.283 30 H -0.283 1.283 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.410 0.590 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.048 0.952 48 H 0.075 0.925 49 H 0.071 0.929 50 H 0.034 0.966 51 H 0.045 0.955 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.550 11.795 26.948 29.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.019 3.981 3 H 0.114 0.886 4 N -0.352 5.352 5 C 0.131 3.869 6 C -0.225 4.225 7 C -0.073 4.073 8 C -0.187 4.187 9 C 0.055 3.945 10 N -0.348 5.348 11 C -0.022 4.022 12 C -0.170 4.170 13 C -0.197 4.197 14 C 0.304 3.696 15 O -0.409 6.409 16 C -0.064 4.064 17 C -0.229 4.229 18 C 0.288 3.712 19 O -0.417 6.417 20 N -0.327 5.327 21 C -0.078 4.078 22 C 0.125 3.875 23 C -0.567 4.567 24 H 0.076 0.924 25 C -0.142 4.142 26 N -0.532 5.532 27 Si 0.726 3.274 28 H -0.198 1.198 29 H -0.209 1.209 30 H -0.209 1.209 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.248 0.752 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.066 0.934 48 H 0.094 0.906 49 H 0.089 0.911 50 H 0.052 0.948 51 H 0.063 0.937 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.415 11.639 26.350 29.008 hybrid contribution -0.632 -1.077 -0.611 1.390 sum 2.783 10.562 25.740 27.961 Atomic orbital electron populations 1.22406 0.93690 1.03583 1.03211 1.20781 0.95160 0.97144 0.85003 0.88596 1.44607 1.71574 1.13149 1.05842 1.17896 0.91875 0.91328 0.85826 1.20541 1.09285 1.00311 0.92329 1.20639 0.96652 0.93316 0.96689 1.19767 1.08351 0.94565 0.96048 1.20123 0.82534 0.97021 0.94791 1.48431 1.10163 1.16608 1.59600 1.22115 0.84667 0.97650 0.97789 1.22621 0.97075 0.94509 1.02818 1.22339 0.93730 0.98825 1.04783 1.20910 0.90446 0.81233 0.77044 1.90718 1.56762 1.50100 1.43322 1.20821 0.95044 0.99032 0.91510 1.20683 1.10061 0.93114 0.99007 1.20237 0.80591 0.85791 0.84536 1.90651 1.41528 1.23574 1.85969 1.48074 1.58395 1.19104 1.07118 1.22003 0.97765 0.84861 1.03159 1.19337 0.96836 0.91441 0.79868 1.21443 0.99972 1.24315 1.10933 0.92355 1.24951 0.96049 0.96810 0.96344 1.69943 1.24682 1.39986 1.18590 0.86432 0.82129 0.80445 0.78351 1.19794 1.20896 1.20854 0.91485 0.91558 0.89980 0.75188 0.86183 0.86623 0.89624 0.89985 0.91099 0.90267 0.89840 0.89259 0.88137 0.88004 0.86117 0.86092 0.93372 0.90601 0.91106 0.94807 0.93702 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 8.91 37.16 0.33 -1.92 16 2 C 0.13 1.94 1.84 -69.08 -0.13 1.81 16 3 H 0.10 1.30 6.07 -51.93 -0.32 0.98 16 4 N -0.72 -10.62 5.16 -53.29 -0.27 -10.90 16 5 C 0.24 3.13 6.64 -83.79 -0.56 2.57 16 6 C -0.20 -2.37 9.90 -39.38 -0.39 -2.76 16 7 C -0.05 -0.53 9.69 -39.61 -0.38 -0.92 16 8 C -0.18 -1.91 5.47 -104.58 -0.57 -2.48 16 9 C 0.18 1.48 6.05 -5.19 -0.03 1.45 16 10 N -0.61 -5.11 2.92 -173.67 -0.51 -5.62 16 11 C 0.10 0.51 7.35 -3.03 -0.02 0.49 16 12 C -0.13 -0.58 7.19 -25.00 -0.18 -0.76 16 13 C -0.16 -0.99 6.86 -26.74 -0.18 -1.18 16 14 C 0.52 5.34 8.02 -10.86 -0.09 5.25 16 15 O -0.53 -7.69 17.59 5.55 0.10 -7.59 16 16 C -0.04 -0.53 9.69 -39.61 -0.38 -0.92 16 17 C -0.21 -2.59 8.93 -39.38 -0.35 -2.94 16 18 C 0.50 10.22 7.05 -10.99 -0.08 10.14 16 19 O -0.54 -13.16 15.37 5.56 0.09 -13.07 16 20 N -0.60 -12.33 2.86 -182.95 -0.52 -12.85 16 21 C 0.07 1.01 9.74 59.85 0.58 1.59 16 22 C 0.24 6.32 5.22 -5.19 -0.03 6.29 16 23 C -0.53 -14.72 9.39 -34.44 -0.32 -15.05 16 24 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 25 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 26 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 27 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 28 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 29 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 30 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.74 7.65 -51.93 -0.40 0.35 16 33 H 0.08 1.06 5.41 -51.93 -0.28 0.78 16 34 H 0.41 6.45 7.75 -40.82 -0.32 6.13 16 35 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 36 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.09 0.79 7.87 -51.93 -0.41 0.38 16 38 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 39 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 46 H 0.12 1.43 5.99 -52.49 -0.31 1.12 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.08 1.19 8.11 -51.93 -0.42 0.77 16 49 H 0.07 0.87 4.11 -51.93 -0.21 0.66 16 50 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 51 H 0.04 1.31 7.36 -51.93 -0.38 0.93 16 52 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 423.34 15.07 6.38 6.38 Total: -1.00 -35.36 423.34 -9.99 -45.34 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -8.08 Total: 5.02 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -2.88 Total: 2.29 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.57 Total: -54.99 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: 0.18 Total: -20.66 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -35.36 -9.99 -45.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079029624.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.426 kcal (2) G-P(sol) polarization free energy of solvation -35.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds