Wall clock time and date at job start Tue Mar 31 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37101 * 119.99799 * 2 1 4 4 H 1.08003 * 119.99759 * 184.37538 * 3 2 1 5 5 C 1.38950 * 120.00356 * 4.37339 * 3 2 1 6 6 N 1.31412 * 119.99695 * 5.04450 * 5 3 2 7 7 Si 1.86797 * 120.00503 * 185.04324 * 5 3 2 8 8 H 1.48498 * 109.46889 * 59.99727 * 7 5 3 9 9 H 1.48494 * 109.47334 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46720 * 300.00204 * 7 5 3 11 11 C 1.34776 * 120.00226 * 179.97438 * 2 1 3 12 12 O 1.21290 * 119.99987 * 4.92785 * 11 2 1 13 13 C 1.50703 * 120.00022 * 184.93376 * 11 2 1 14 14 C 1.52995 * 109.47013 * 173.94999 * 13 11 2 15 15 C 1.52999 * 109.47080 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47461 * 59.99743 * 15 14 13 17 17 C 1.52997 * 109.46666 * 300.00300 * 16 15 14 18 18 C 1.52997 * 109.47164 * 53.94855 * 13 11 2 19 19 C 1.53002 * 109.47051 * 299.99448 * 17 16 15 20 20 C 1.53002 * 109.46935 * 60.00717 * 19 17 16 21 21 C 1.50699 * 109.46782 * 179.97438 * 20 19 17 22 22 O 1.21286 * 119.99920 * 246.91665 * 21 20 19 23 23 N 1.34778 * 119.99731 * 66.92420 * 21 20 19 24 24 C 1.46493 * 120.00505 * 5.59171 * 23 21 20 25 25 C 1.46502 * 119.99379 * 185.59632 * 23 21 20 26 26 C 1.47197 * 109.47306 * 89.99882 * 25 23 21 27 27 N 8.56902 * 149.74125 * 318.65047 * 2 1 3 28 28 C 1.52996 * 109.46874 * 299.99848 * 20 19 17 29 29 C 1.52998 * 109.46917 * 293.94600 * 13 11 2 30 30 H 1.09000 * 109.47222 * 184.08688 * 1 2 3 31 31 H 1.09001 * 109.47386 * 304.08426 * 1 2 3 32 32 H 1.09001 * 109.47025 * 64.08754 * 1 2 3 33 33 H 0.97000 * 119.99999 * 179.97438 * 6 5 3 34 34 H 1.08997 * 109.46996 * 299.99509 * 14 13 11 35 35 H 1.08997 * 109.47407 * 59.99828 * 14 13 11 36 36 H 1.09003 * 109.47263 * 180.02562 * 15 14 13 37 37 H 1.08996 * 109.46896 * 180.02562 * 16 15 14 38 38 H 1.09001 * 109.46869 * 59.99793 * 16 15 14 39 39 H 1.09010 * 109.46581 * 179.97438 * 17 16 15 40 40 H 1.08997 * 109.47448 * 60.00122 * 18 13 11 41 41 H 1.09002 * 109.47532 * 299.99726 * 18 13 11 42 42 H 1.09003 * 109.46730 * 180.02562 * 19 17 16 43 43 H 1.08993 * 109.47297 * 300.00125 * 19 17 16 44 44 H 1.09010 * 109.46783 * 85.73113 * 24 23 21 45 45 H 1.08996 * 109.47876 * 205.73396 * 24 23 21 46 46 H 1.09007 * 109.47019 * 325.73535 * 24 23 21 47 47 H 1.09005 * 109.46764 * 209.99446 * 25 23 21 48 48 H 1.09003 * 109.47440 * 329.99532 * 25 23 21 49 49 H 1.09006 * 109.47105 * 299.99689 * 28 20 19 50 50 H 1.09004 * 109.46916 * 180.02562 * 28 20 19 51 51 H 1.08993 * 109.47508 * 300.00464 * 29 13 11 52 52 H 1.09003 * 109.46805 * 60.00229 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.2281 1.1887 -0.0714 5 6 1.4587 2.3890 0.0918 6 7 0.1579 2.3857 0.2782 7 14 2.3778 4.0090 -0.0498 8 1 3.0508 4.0824 -1.3715 9 1 1.4189 5.1352 0.0813 10 1 3.3946 4.0971 1.0289 11 6 2.1389 -1.1672 0.0005 12 8 1.5359 -2.2157 -0.0892 13 6 3.6417 -1.1695 0.1128 14 6 4.1413 -2.6099 0.2412 15 6 5.6670 -2.6122 0.3558 16 6 6.0869 -1.8146 1.5921 17 6 5.5872 -0.3742 1.4636 18 6 4.0621 -0.3718 1.3488 19 6 6.1936 0.2663 0.2134 20 6 5.7737 -0.5313 -1.0230 21 6 6.3704 0.0999 -2.2544 22 8 5.6496 0.6230 -3.0777 23 7 7.7051 0.0830 -2.4409 24 6 8.5654 -0.6536 -1.5118 25 6 8.2956 0.8016 -3.5729 26 6 8.6176 2.1789 -3.1657 27 7 8.8665 3.2415 -2.8527 28 6 6.2733 -1.9717 -0.8945 29 6 4.2475 -0.5292 -1.1378 30 1 -0.3633 -1.0250 0.0732 31 1 -0.3634 0.5759 0.8511 32 1 -0.3633 0.4491 -0.9244 33 1 -0.3249 3.2245 0.3426 34 1 3.7098 -3.0660 1.1321 35 1 3.8419 -3.1782 -0.6394 36 1 6.0230 -3.6384 0.4468 37 1 7.1738 -1.8159 1.6734 38 1 5.6549 -2.2709 2.4828 39 1 5.8860 0.1939 2.3447 40 1 3.6305 -0.8279 2.2397 41 1 3.7062 0.6545 1.2573 42 1 5.8379 1.2926 0.1221 43 1 7.2804 0.2646 0.2950 44 1 8.6254 -1.6970 -1.8218 45 1 9.5634 -0.2155 -1.5154 46 1 8.1473 -0.5967 -0.5067 47 1 9.2067 0.2940 -3.8900 48 1 7.5855 0.8236 -4.3996 49 1 7.3603 -1.9734 -0.8129 50 1 5.9745 -2.5398 -1.7755 51 1 3.9480 -1.0974 -2.0184 52 1 3.8915 0.4970 -1.2293 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081407117.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:35 Heat of formation + Delta-G solvation = -0.931044 kcal Electronic energy + Delta-G solvation = -35927.163795 eV Core-core repulsion = 31700.050502 eV Total energy + Delta-G solvation = -4227.113294 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.200 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.09043 -39.65424 -37.96180 -36.90303 -35.62313 -34.88034 -32.89370 -32.52280 -32.28033 -31.23994 -29.13379 -26.96007 -26.49683 -25.56310 -25.51859 -24.66804 -22.59342 -21.65802 -21.28657 -19.65433 -18.98337 -18.10693 -17.72859 -17.03392 -16.54266 -16.29028 -15.60097 -15.07279 -14.60257 -14.49056 -14.41243 -14.25931 -14.18146 -14.06142 -13.88658 -13.66264 -13.30999 -13.05945 -13.05181 -12.85148 -12.74942 -12.60386 -12.55034 -12.47223 -12.20102 -12.02318 -11.75472 -11.48005 -11.30510 -10.95728 -10.81344 -10.72754 -10.62695 -10.53025 -10.52544 -10.43019 -10.39626 -10.26161 -9.99626 -9.62952 -9.28279 -9.15420 -9.06112 -8.92591 -8.12183 -7.83513 -6.20849 -3.84553 2.10652 2.55114 2.58698 3.11877 3.15411 3.20355 3.24130 3.80020 3.92958 4.07885 4.30675 4.58392 4.68378 4.72224 4.76053 4.89135 5.05192 5.09415 5.12945 5.21449 5.27657 5.27913 5.33660 5.39232 5.43810 5.47515 5.63958 5.71012 5.75780 5.83119 5.94831 5.99885 6.00997 6.06674 6.08729 6.15335 6.29141 6.32538 6.44528 6.52672 6.57857 6.62539 6.73972 6.83478 6.93433 7.01702 7.07376 7.09635 7.29248 7.32293 7.46855 7.59177 7.83320 8.06040 8.44282 9.10314 9.60104 9.99219 10.67078 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.009491 B = 0.005153 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.580114 B = 5432.103765 C = 7177.581619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.440 5.440 3 C -0.334 4.334 4 H 0.121 0.879 5 C 0.035 3.965 6 N -0.873 5.873 7 Si 0.912 3.088 8 H -0.270 1.270 9 H -0.281 1.281 10 H -0.271 1.271 11 C 0.458 3.542 12 O -0.615 6.615 13 C -0.045 4.045 14 C -0.085 4.085 15 C -0.082 4.082 16 C -0.108 4.108 17 C -0.081 4.081 18 C -0.124 4.124 19 C -0.106 4.106 20 C -0.064 4.064 21 C 0.528 3.472 22 O -0.515 6.515 23 N -0.619 5.619 24 C 0.058 3.942 25 C 0.209 3.791 26 C 0.188 3.812 27 N -0.420 5.420 28 C -0.125 4.125 29 C -0.091 4.091 30 H 0.032 0.968 31 H 0.090 0.910 32 H 0.043 0.957 33 H 0.266 0.734 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.109 0.891 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.097 0.903 47 H 0.123 0.877 48 H 0.129 0.871 49 H 0.085 0.915 50 H 0.066 0.934 51 H 0.063 0.937 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.555 -7.406 -1.145 20.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.157 5.157 3 C -0.461 4.461 4 H 0.138 0.862 5 C -0.169 4.169 6 N -0.513 5.513 7 Si 0.738 3.262 8 H -0.195 1.195 9 H -0.206 1.206 10 H -0.197 1.197 11 C 0.246 3.754 12 O -0.503 6.503 13 C -0.048 4.048 14 C -0.123 4.123 15 C -0.101 4.101 16 C -0.145 4.145 17 C -0.100 4.100 18 C -0.161 4.161 19 C -0.143 4.143 20 C -0.067 4.067 21 C 0.317 3.683 22 O -0.388 6.388 23 N -0.355 5.355 24 C -0.084 4.084 25 C 0.083 3.917 26 C -0.132 4.132 27 N -0.098 5.098 28 C -0.162 4.162 29 C -0.129 4.129 30 H 0.051 0.949 31 H 0.108 0.892 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.126 0.874 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.115 0.885 47 H 0.141 0.859 48 H 0.147 0.853 49 H 0.103 0.897 50 H 0.085 0.915 51 H 0.082 0.918 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 17.996 -5.858 -1.156 18.960 hybrid contribution 0.276 0.685 -0.275 0.787 sum 18.271 -5.173 -1.431 19.043 Atomic orbital electron populations 1.21709 0.80039 0.97754 1.03482 1.43661 1.06105 1.04686 1.61228 1.20158 0.93290 0.82798 1.49858 0.86211 1.25278 0.95671 0.99533 0.96382 1.70158 1.06661 1.26963 1.47532 0.86210 0.79180 0.81418 0.79395 1.19529 1.20648 1.19664 1.19790 0.88633 0.83616 0.83370 1.90496 1.69997 1.31738 1.58092 1.20255 0.93327 0.95571 0.95691 1.21299 0.92882 0.95573 1.02512 1.21072 0.96435 0.98447 0.94138 1.21577 0.99582 0.95487 0.97857 1.21048 0.96632 0.95650 0.96652 1.22002 0.93355 1.04163 0.96630 1.21724 0.99825 0.99410 0.93377 1.20705 0.98141 0.96039 0.91845 1.21055 0.80857 0.78650 0.87770 1.90748 1.59388 1.43959 1.44668 1.47810 1.06894 1.52056 1.28745 1.22582 0.94662 0.96318 0.94849 1.18827 1.01457 0.80824 0.90638 1.29897 0.93349 0.95648 0.94351 1.81171 1.09105 1.12496 1.07019 1.22183 1.01324 0.93592 0.99063 1.21628 0.89795 1.04498 0.96940 0.94916 0.89164 0.93826 0.92305 0.91821 0.91716 0.91104 0.92485 0.91780 0.90948 0.92276 0.87352 0.91184 0.91311 0.91173 0.91174 0.88550 0.85898 0.85326 0.89722 0.91535 0.91810 0.87969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.90 8.92 59.85 0.53 3.44 16 2 N -0.44 -11.23 3.02 -122.19 -0.37 -11.60 16 3 C -0.33 -8.29 6.90 -14.93 -0.10 -8.39 16 4 H 0.12 2.78 2.91 -52.48 -0.15 2.63 16 5 C 0.04 0.89 5.43 -17.47 -0.09 0.79 16 6 N -0.87 -22.86 9.52 55.50 0.53 -22.33 16 7 Si 0.91 20.11 29.56 -169.99 -5.02 15.09 16 8 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 10 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 11 C 0.46 11.07 6.46 -10.98 -0.07 11.00 16 12 O -0.62 -16.45 15.33 5.55 0.09 -16.36 16 13 C -0.05 -0.85 0.49 -155.66 -0.08 -0.93 16 14 C -0.08 -1.39 3.78 -26.73 -0.10 -1.49 16 15 C -0.08 -0.97 3.19 -90.62 -0.29 -1.26 16 16 C -0.11 -1.17 5.19 -26.73 -0.14 -1.31 16 17 C -0.08 -1.06 3.19 -90.65 -0.29 -1.35 16 18 C -0.12 -2.16 4.09 -26.76 -0.11 -2.27 16 19 C -0.11 -1.36 4.26 -26.73 -0.11 -1.47 16 20 C -0.06 -0.88 0.49 -155.64 -0.08 -0.95 16 21 C 0.53 7.32 6.47 -10.99 -0.07 7.25 16 22 O -0.51 -9.30 15.53 5.55 0.09 -9.22 16 23 N -0.62 -5.78 2.83 -184.93 -0.52 -6.30 16 24 C 0.06 0.34 8.46 59.84 0.51 0.84 16 25 C 0.21 1.57 5.91 -6.83 -0.04 1.53 16 26 C 0.19 2.11 15.76 -20.78 -0.33 1.78 16 27 N -0.42 -6.08 18.53 42.13 0.78 -5.30 16 28 C -0.12 -1.34 3.98 -26.73 -0.11 -1.45 16 29 C -0.09 -1.67 2.79 -26.71 -0.07 -1.74 16 30 H 0.03 0.82 6.93 -51.93 -0.36 0.46 16 31 H 0.09 2.38 6.28 -51.93 -0.33 2.05 16 32 H 0.04 1.15 7.71 -51.93 -0.40 0.75 16 33 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.14 8.03 -51.93 -0.42 0.72 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.11 2.15 4.53 -51.93 -0.24 1.92 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.07 0.68 5.24 -51.93 -0.27 0.41 16 44 H 0.07 0.29 7.04 -51.92 -0.37 -0.07 16 45 H 0.07 0.28 8.04 -51.93 -0.42 -0.14 16 46 H 0.10 0.63 3.23 -51.93 -0.17 0.46 16 47 H 0.12 0.36 8.07 -51.93 -0.42 -0.06 16 48 H 0.13 1.02 7.35 -51.93 -0.38 0.64 16 49 H 0.08 0.64 3.54 -51.93 -0.18 0.45 16 50 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 52 H 0.10 2.19 4.87 -51.93 -0.25 1.94 16 LS Contribution 376.79 15.07 5.68 5.68 Total: -1.00 -33.47 376.79 -7.09 -40.57 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -7.29 Total: 5.77 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -1.04 Total: 4.00 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.42 Total: -45.53 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: 0.17 Total: -25.58 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.47 -7.09 -40.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081407117.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.637 kcal (2) G-P(sol) polarization free energy of solvation -33.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds