Wall clock time and date at job start Tue Mar 31 2020 05:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39657 * 120.14984 * 60.85947 * 3 2 1 5 5 C 1.37928 * 119.84267 * 180.02562 * 4 3 2 6 6 C 1.38384 * 120.15363 * 0.02562 * 5 4 3 7 7 S 1.76199 * 119.84554 * 179.97438 * 6 5 4 8 8 O 1.42106 * 106.40115 * 336.45682 * 7 6 5 9 9 O 1.42098 * 106.40069 * 203.54202 * 7 6 5 10 10 N 1.65590 * 107.22003 * 89.99950 * 7 6 5 11 11 C 1.36934 * 120.00116 * 89.99894 * 10 7 6 12 12 H 1.08007 * 120.00033 * 228.29034 * 11 10 7 13 13 C 1.38818 * 120.00214 * 48.28639 * 11 10 7 14 14 N 1.31616 * 119.99544 * 25.31536 * 13 11 10 15 15 Si 1.86792 * 120.00259 * 205.31511 * 13 11 10 16 16 H 1.48503 * 109.47393 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46989 * 119.99964 * 15 13 11 18 18 H 1.48505 * 109.47377 * 239.99920 * 15 13 11 19 19 C 1.46500 * 120.00264 * 269.72373 * 10 7 6 20 20 C 1.52998 * 117.50342 * 188.19953 * 19 10 7 21 21 C 1.53002 * 117.50220 * 119.53792 * 19 10 7 22 22 C 1.38337 * 120.30383 * 0.23268 * 6 5 4 23 23 C 1.37965 * 120.15157 * 359.48705 * 22 6 5 24 24 C 1.50708 * 120.07792 * 180.25557 * 23 22 6 25 25 F 1.39896 * 109.46968 * 0.27664 * 24 23 22 26 26 F 1.39905 * 109.46919 * 120.27580 * 24 23 22 27 27 F 1.39896 * 109.47023 * 240.27657 * 24 23 22 28 28 H 1.08003 * 120.07675 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.91936 * 180.02562 * 5 4 3 30 30 H 0.97000 * 120.00062 * 174.21092 * 14 13 11 31 31 H 1.09000 * 115.54746 * 333.87195 * 19 10 7 32 32 H 1.09001 * 117.49818 * 359.97438 * 20 19 10 33 33 H 1.08994 * 117.50122 * 145.01804 * 20 19 10 34 34 H 1.08997 * 117.50157 * 214.98809 * 21 19 10 35 35 H 1.09007 * 117.49620 * 359.97438 * 21 19 10 36 36 H 1.08001 * 119.92463 * 179.72328 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 -0.5871 -1.0548 5 6 4.6490 -0.5834 -1.0481 6 6 5.3374 0.0005 0.0008 7 16 7.0994 0.0001 0.0015 8 8 7.5007 -1.0838 -0.8253 9 8 7.5002 0.1324 1.3583 10 7 7.5902 1.3818 -0.7680 11 6 7.7929 2.5301 -0.0501 12 1 7.3658 3.4621 -0.3901 13 6 8.5473 2.4965 1.1147 14 7 9.4553 1.5588 1.2838 15 14 8.2738 3.7820 2.4421 16 1 7.2040 4.7178 2.0121 17 1 7.8672 3.1122 3.7036 18 1 9.5325 4.5376 2.6663 19 6 7.8135 1.3742 -2.2158 20 6 8.4475 2.6191 -2.8395 21 6 6.9636 2.3200 -3.0667 22 6 4.6486 0.5797 1.0514 23 6 3.2690 0.5882 1.0547 24 6 2.5203 1.2248 2.1973 25 9 3.4334 1.7407 3.1232 26 9 1.7163 2.2603 1.7087 27 9 1.7163 0.2645 2.8206 28 1 2.7336 -1.0435 -1.8738 29 1 5.1929 -1.0372 -1.8633 30 1 10.0397 1.5834 2.0576 31 1 8.0742 0.4073 -2.6462 32 1 8.6982 3.4440 -2.1726 33 1 9.1251 2.4713 -3.6803 34 1 6.6655 1.9755 -4.0569 35 1 6.2380 2.9477 -2.5492 36 1 5.1921 1.0297 1.8691 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083537800.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:44 Heat of formation + Delta-G solvation = -119.008252 kcal Electronic energy + Delta-G solvation = -30933.477317 eV Core-core repulsion = 26096.921996 eV Total energy + Delta-G solvation = -4836.555321 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 360.054 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -50.19638 -47.68640 -47.66891 -39.56557 -37.35779 -36.60741 -35.84419 -34.30226 -33.50224 -32.25720 -31.53652 -30.84797 -26.33033 -25.18419 -24.20428 -22.31313 -21.73068 -20.74298 -19.54217 -19.15065 -18.53338 -18.46634 -18.30444 -16.73568 -16.23134 -15.94169 -15.65034 -15.26807 -14.71805 -14.67986 -14.41267 -14.31178 -14.18883 -14.09188 -13.99785 -13.84051 -13.79299 -13.73599 -13.45281 -12.96938 -12.74868 -12.59413 -12.51777 -12.31001 -11.87622 -11.59830 -11.39147 -11.27784 -10.99819 -10.78158 -10.59217 -10.49850 -10.40913 -10.15786 -9.96321 -9.57222 -9.39463 -9.23320 -8.87846 -7.75882 -6.77788 -4.36205 0.22526 1.00410 1.67638 2.37582 2.55969 2.65947 3.08567 3.17873 3.22514 3.43520 3.48365 3.65321 3.92547 3.94902 4.32410 4.37647 4.55159 4.66819 4.70421 5.05026 5.08802 5.21448 5.32209 5.54892 5.58590 5.63050 5.68711 5.75266 5.91121 5.98252 6.17327 6.23870 6.38444 6.56276 6.59660 6.84745 7.15989 7.17318 7.27827 7.95313 8.62087 9.04316 10.25716 Molecular weight = 360.05amu Principal moments of inertia in cm(-1) A = 0.011174 B = 0.004973 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.221109 B = 5628.913702 C = 6789.053406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C 0.242 3.758 3 C 0.040 3.960 4 C -0.095 4.095 5 C -0.006 4.006 6 C -0.630 4.630 7 S 2.523 3.477 8 O -1.006 7.006 9 O -0.938 6.938 10 N -0.778 5.778 11 C -0.266 4.266 12 H 0.089 0.911 13 C 0.060 3.940 14 N -0.754 5.754 15 Si 0.916 3.084 16 H -0.261 1.261 17 H -0.268 1.268 18 H -0.276 1.276 19 C 0.095 3.905 20 C -0.161 4.161 21 C -0.213 4.213 22 C 0.021 3.979 23 C -0.169 4.169 24 C 0.506 3.494 25 F -0.166 7.166 26 F -0.175 7.175 27 F -0.176 7.176 28 H 0.145 0.855 29 H 0.152 0.848 30 H 0.285 0.715 31 H 0.123 0.877 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.882 0.928 -3.869 7.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.066 5.066 2 C -0.074 4.074 3 C 0.036 3.964 4 C -0.116 4.116 5 C -0.025 4.025 6 C -0.703 4.703 7 S 2.622 3.378 8 O -0.995 6.995 9 O -0.925 6.925 10 N -0.598 5.598 11 C -0.417 4.417 12 H 0.106 0.894 13 C -0.161 4.161 14 N -0.388 5.388 15 Si 0.740 3.260 16 H -0.185 1.185 17 H -0.193 1.193 18 H -0.201 1.201 19 C -0.014 4.014 20 C -0.201 4.201 21 C -0.253 4.253 22 C 0.002 3.998 23 C -0.173 4.173 24 C 0.451 3.549 25 F -0.147 7.147 26 F -0.156 7.156 27 F -0.157 7.157 28 H 0.163 0.837 29 H 0.170 0.830 30 H 0.096 0.904 31 H 0.140 0.860 32 H 0.127 0.873 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.315 -0.186 -3.331 8.040 hybrid contribution -0.616 0.779 0.807 1.280 sum -7.931 0.593 -2.524 8.344 Atomic orbital electron populations 1.81209 1.11572 1.07165 1.06621 1.25613 0.92631 0.94559 0.94618 1.15657 0.84156 1.00545 0.96003 1.21298 0.94714 0.98724 0.96833 1.21130 0.93143 0.91767 0.96469 1.33410 1.34992 1.03368 0.98558 1.13055 0.73679 0.75982 0.75113 1.93302 1.81319 1.55780 1.69134 1.93442 1.78396 1.85326 1.35373 1.52561 1.67478 1.28494 1.11249 1.19199 1.28581 0.87692 1.06236 0.89388 1.25756 0.93383 0.97481 0.99466 1.69810 1.11547 1.29974 1.27513 0.86045 0.79115 0.79785 0.81062 1.18451 1.19327 1.20145 1.21422 1.03147 0.95439 0.81429 1.23108 0.94406 1.00481 1.02062 1.23392 0.94893 1.06103 1.00939 1.20794 0.90712 0.91183 0.97065 1.20104 0.95511 1.06304 0.95404 1.18248 0.77492 0.76644 0.82487 1.93221 1.66283 1.87378 1.67867 1.93229 1.74691 1.59944 1.87717 1.93222 1.74748 1.63687 1.84084 0.83728 0.83050 0.90428 0.85995 0.87267 0.89597 0.89589 0.88874 0.82241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -6.12 18.54 41.84 0.78 -5.35 16 2 C 0.24 3.51 13.19 -22.47 -0.30 3.21 16 3 C 0.04 0.57 5.71 -106.93 -0.61 -0.04 16 4 C -0.09 -1.19 9.76 -39.17 -0.38 -1.57 16 5 C -0.01 -0.09 9.50 -39.64 -0.38 -0.47 16 6 C -0.63 -11.27 5.98 -39.49 -0.24 -11.51 16 7 S 2.52 55.21 5.45 -107.50 -0.59 54.63 16 8 O -1.01 -23.41 16.05 -57.17 -0.92 -24.33 16 9 O -0.94 -23.38 13.25 -57.17 -0.76 -24.14 16 10 N -0.78 -16.27 3.05 -53.42 -0.16 -16.44 16 11 C -0.27 -5.75 7.69 -15.06 -0.12 -5.87 16 12 H 0.09 1.78 7.72 -52.48 -0.41 1.37 16 13 C 0.06 1.37 4.00 -17.43 -0.07 1.30 16 14 N -0.75 -18.65 11.52 55.49 0.64 -18.01 16 15 Si 0.92 17.99 29.63 -169.99 -5.04 12.96 16 16 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 17 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 18 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 19 C 0.09 1.69 6.38 -67.93 -0.43 1.26 16 20 C -0.16 -2.52 9.84 -26.70 -0.26 -2.78 16 21 C -0.21 -3.12 10.29 -26.69 -0.27 -3.39 16 22 C 0.02 0.37 8.89 -39.64 -0.35 0.02 16 23 C -0.17 -2.65 5.40 -104.21 -0.56 -3.21 16 24 C 0.51 7.82 2.89 36.01 0.10 7.93 16 25 F -0.17 -2.63 15.98 2.25 0.04 -2.59 16 26 F -0.17 -2.69 16.53 2.25 0.04 -2.66 16 27 F -0.18 -2.71 16.52 2.25 0.04 -2.67 16 28 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 29 H 0.15 1.99 7.60 -52.48 -0.40 1.59 16 30 H 0.28 6.62 8.32 -40.82 -0.34 6.28 16 31 H 0.12 2.14 7.38 -51.93 -0.38 1.76 16 32 H 0.11 1.82 6.96 -51.93 -0.36 1.46 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.16 2.84 6.69 -52.49 -0.35 2.49 16 LS Contribution 344.52 15.07 5.19 5.19 Total: -1.00 -27.45 344.52 -7.34 -34.79 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -2.73 Total: 3.73 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -3.87 Total: -15.11 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 1.25 Total: -39.79 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: -1.68 Total: -48.47 kcal Atomic # 9 Polarization: -8.03 SS G_CDS: 0.11 Total: -7.92 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.04 Total: 12.96 kcal Atomic # 16 Polarization: 55.21 SS G_CDS: -0.59 Total: 54.63 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.45 -7.34 -34.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083537800.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.222 kcal (2) G-P(sol) polarization free energy of solvation -27.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds