Wall clock time and date at job start Tue Mar 31 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39657 * 120.14984 * 60.85947 * 3 2 1 5 5 C 1.37928 * 119.84267 * 180.02562 * 4 3 2 6 6 C 1.38384 * 120.15363 * 0.02562 * 5 4 3 7 7 S 1.76199 * 119.84554 * 179.97438 * 6 5 4 8 8 O 1.42106 * 106.40115 * 336.45682 * 7 6 5 9 9 O 1.42098 * 106.40069 * 203.54202 * 7 6 5 10 10 N 1.65590 * 107.22003 * 89.99950 * 7 6 5 11 11 C 1.36934 * 120.00116 * 89.99894 * 10 7 6 12 12 H 1.08007 * 120.00033 * 228.29034 * 11 10 7 13 13 C 1.38818 * 120.00214 * 48.28639 * 11 10 7 14 14 N 1.31616 * 119.99544 * 25.31536 * 13 11 10 15 15 Si 1.86792 * 120.00259 * 205.31511 * 13 11 10 16 16 H 1.48503 * 109.47393 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46989 * 119.99964 * 15 13 11 18 18 H 1.48505 * 109.47377 * 239.99920 * 15 13 11 19 19 C 1.46500 * 120.00264 * 269.72373 * 10 7 6 20 20 C 1.52998 * 117.50342 * 188.19953 * 19 10 7 21 21 C 1.53002 * 117.50220 * 119.53792 * 19 10 7 22 22 C 1.38337 * 120.30383 * 0.23268 * 6 5 4 23 23 C 1.37965 * 120.15157 * 359.48705 * 22 6 5 24 24 C 1.50708 * 120.07792 * 180.25557 * 23 22 6 25 25 F 1.39896 * 109.46968 * 0.27664 * 24 23 22 26 26 F 1.39905 * 109.46919 * 120.27580 * 24 23 22 27 27 F 1.39896 * 109.47023 * 240.27657 * 24 23 22 28 28 H 1.08003 * 120.07675 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.91936 * 180.02562 * 5 4 3 30 30 H 0.97000 * 120.00062 * 174.21092 * 14 13 11 31 31 H 1.09000 * 115.54746 * 333.87195 * 19 10 7 32 32 H 1.09001 * 117.49818 * 359.97438 * 20 19 10 33 33 H 1.08994 * 117.50122 * 145.01804 * 20 19 10 34 34 H 1.08997 * 117.50157 * 214.98809 * 21 19 10 35 35 H 1.09007 * 117.49620 * 359.97438 * 21 19 10 36 36 H 1.08001 * 119.92463 * 179.72328 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 -0.5871 -1.0548 5 6 4.6490 -0.5834 -1.0481 6 6 5.3374 0.0005 0.0008 7 16 7.0994 0.0001 0.0015 8 8 7.5007 -1.0838 -0.8253 9 8 7.5002 0.1324 1.3583 10 7 7.5902 1.3818 -0.7680 11 6 7.7929 2.5301 -0.0501 12 1 7.3658 3.4621 -0.3901 13 6 8.5473 2.4965 1.1147 14 7 9.4553 1.5588 1.2838 15 14 8.2738 3.7820 2.4421 16 1 7.2040 4.7178 2.0121 17 1 7.8672 3.1122 3.7036 18 1 9.5325 4.5376 2.6663 19 6 7.8135 1.3742 -2.2158 20 6 8.4475 2.6191 -2.8395 21 6 6.9636 2.3200 -3.0667 22 6 4.6486 0.5797 1.0514 23 6 3.2690 0.5882 1.0547 24 6 2.5203 1.2248 2.1973 25 9 3.4334 1.7407 3.1232 26 9 1.7163 2.2603 1.7087 27 9 1.7163 0.2645 2.8206 28 1 2.7336 -1.0435 -1.8738 29 1 5.1929 -1.0372 -1.8633 30 1 10.0397 1.5834 2.0576 31 1 8.0742 0.4073 -2.6462 32 1 8.6982 3.4440 -2.1726 33 1 9.1251 2.4713 -3.6803 34 1 6.6655 1.9755 -4.0569 35 1 6.2380 2.9477 -2.5492 36 1 5.1921 1.0297 1.8691 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083537800.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:42 Heat of formation + Delta-G solvation = -133.927926 kcal Electronic energy + Delta-G solvation = -30934.124283 eV Core-core repulsion = 26096.921996 eV Total energy + Delta-G solvation = -4837.202286 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 360.054 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -51.44201 -48.94043 -48.90803 -40.80175 -38.73461 -37.82008 -37.63835 -36.10883 -35.07730 -33.50285 -32.79452 -32.42373 -27.57206 -26.81469 -25.50037 -23.53906 -22.91909 -22.17106 -20.82274 -20.72076 -19.78042 -19.76265 -19.65407 -18.29383 -17.71214 -17.43844 -17.03065 -16.83878 -15.97932 -15.94556 -15.86688 -15.57075 -15.46914 -15.35779 -15.23734 -15.06983 -15.05015 -15.04001 -14.95375 -14.21824 -14.09823 -13.92455 -13.82724 -13.70569 -13.45600 -13.08874 -12.92606 -12.60944 -12.52134 -12.38995 -12.25123 -12.05140 -11.96738 -11.61086 -11.50514 -10.93111 -10.65248 -10.51777 -10.45466 -9.30031 -8.44938 -6.06400 -1.02036 -0.22079 0.03472 1.20343 1.32153 1.42861 1.49996 1.57754 1.65409 2.22285 2.26638 2.33951 2.42895 2.69470 2.81538 3.00425 3.11192 3.28275 3.48318 3.53790 3.80557 3.94055 4.05469 4.23295 4.34728 4.44868 4.47659 4.49166 4.59107 4.72061 4.92151 5.02764 5.05972 5.35624 5.36285 5.49231 5.64024 5.84353 6.01077 6.29073 7.00154 7.42252 8.59572 Molecular weight = 360.05amu Principal moments of inertia in cm(-1) A = 0.011174 B = 0.004973 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.221109 B = 5628.913702 C = 6789.053406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C 0.256 3.744 3 C 0.049 3.951 4 C -0.067 4.067 5 C 0.000 4.000 6 C -0.649 4.649 7 S 2.545 3.455 8 O -1.026 7.026 9 O -0.977 6.977 10 N -0.791 5.791 11 C -0.276 4.276 12 H 0.099 0.901 13 C 0.026 3.974 14 N -0.806 5.806 15 Si 0.957 3.043 16 H -0.243 1.243 17 H -0.287 1.287 18 H -0.268 1.268 19 C 0.056 3.944 20 C -0.159 4.159 21 C -0.181 4.181 22 C 0.011 3.989 23 C -0.171 4.171 24 C 0.506 3.494 25 F -0.171 7.171 26 F -0.173 7.173 27 F -0.175 7.175 28 H 0.194 0.806 29 H 0.171 0.829 30 H 0.281 0.719 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.090 0.910 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.216 1.041 -6.066 10.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.079 5.079 2 C -0.060 4.060 3 C 0.045 3.955 4 C -0.088 4.088 5 C -0.019 4.019 6 C -0.728 4.728 7 S 2.647 3.353 8 O -1.016 7.016 9 O -0.965 6.965 10 N -0.613 5.613 11 C -0.425 4.425 12 H 0.117 0.883 13 C -0.191 4.191 14 N -0.442 5.442 15 Si 0.780 3.220 16 H -0.166 1.166 17 H -0.214 1.214 18 H -0.193 1.193 19 C -0.052 4.052 20 C -0.199 4.199 21 C -0.221 4.221 22 C -0.008 4.008 23 C -0.175 4.175 24 C 0.452 3.548 25 F -0.152 7.152 26 F -0.154 7.154 27 F -0.156 7.156 28 H 0.211 0.789 29 H 0.189 0.811 30 H 0.091 0.909 31 H 0.138 0.862 32 H 0.112 0.888 33 H 0.128 0.872 34 H 0.137 0.863 35 H 0.108 0.892 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.590 -0.013 -5.546 11.078 hybrid contribution -0.100 0.614 1.396 1.528 sum -9.691 0.601 -4.151 10.559 Atomic orbital electron populations 1.81247 1.12041 1.07577 1.07085 1.25461 0.92350 0.94077 0.94135 1.15766 0.84045 0.99844 0.95826 1.21725 0.93634 0.96469 0.96951 1.21409 0.94273 0.90590 0.95631 1.32734 1.32829 1.06419 1.00777 1.11278 0.74557 0.75484 0.73995 1.93273 1.82477 1.56440 1.69400 1.93408 1.80114 1.85828 1.37190 1.52378 1.68697 1.27658 1.12552 1.19348 1.28632 0.88358 1.06150 0.88324 1.26444 0.92976 0.98555 1.01095 1.69885 1.13517 1.32542 1.28268 0.85417 0.79774 0.78439 0.78400 1.16550 1.21359 1.19253 1.21679 1.06741 0.96510 0.80290 1.23166 0.96031 0.98530 1.02122 1.23421 0.93958 1.03420 1.01309 1.20614 0.91507 0.91854 0.96802 1.20030 0.94776 1.06712 0.96010 1.18241 0.77437 0.76663 0.82440 1.93216 1.66489 1.87452 1.68073 1.93231 1.74626 1.59897 1.87674 1.93224 1.74692 1.63632 1.84082 0.78908 0.81144 0.90944 0.86247 0.88809 0.87248 0.86313 0.89171 0.83755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -11.44 18.54 19.00 0.35 -11.09 16 2 C 0.26 6.55 13.19 88.33 1.17 7.71 16 3 C 0.05 1.22 5.71 -21.36 -0.12 1.10 16 4 C -0.07 -1.37 9.76 22.54 0.22 -1.15 16 5 C 0.00 -0.01 9.50 22.23 0.21 0.20 16 6 C -0.65 -22.52 5.98 22.33 0.13 -22.39 16 7 S 2.54 112.88 5.45 -56.49 -0.31 112.57 16 8 O -1.03 -47.98 16.05 -128.00 -2.05 -50.03 16 9 O -0.98 -50.75 13.25 -128.00 -1.70 -52.45 16 10 N -0.79 -33.33 3.05 -322.93 -0.99 -34.32 16 11 C -0.28 -12.14 7.69 84.04 0.65 -11.49 16 12 H 0.10 3.99 7.72 -2.91 -0.02 3.97 16 13 C 0.03 1.20 4.00 84.86 0.34 1.54 16 14 N -0.81 -41.89 11.52 21.65 0.25 -41.64 16 15 Si 0.96 37.72 29.63 68.60 2.03 39.75 16 16 H -0.24 -8.71 7.11 99.48 0.71 -8.00 16 17 H -0.29 -12.10 7.11 99.48 0.71 -11.40 16 18 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 19 C 0.06 1.94 6.38 44.99 0.29 2.23 16 20 C -0.16 -4.73 9.84 30.62 0.30 -4.43 16 21 C -0.18 -4.79 10.29 30.62 0.31 -4.48 16 22 C 0.01 0.39 8.89 22.23 0.20 0.59 16 23 C -0.17 -5.05 5.40 -19.60 -0.11 -5.16 16 24 C 0.51 15.03 2.89 71.24 0.21 15.23 16 25 F -0.17 -5.37 15.98 44.97 0.72 -4.65 16 26 F -0.17 -5.04 16.53 44.97 0.74 -4.30 16 27 F -0.17 -5.12 16.52 44.97 0.74 -4.38 16 28 H 0.19 2.17 8.06 -2.91 -0.02 2.14 16 29 H 0.17 3.85 7.60 -2.91 -0.02 3.83 16 30 H 0.28 13.90 8.32 -92.71 -0.77 13.13 16 31 H 0.12 4.13 7.38 -2.39 -0.02 4.11 16 32 H 0.09 3.08 6.96 -2.39 -0.02 3.07 16 33 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 36 H 0.14 5.32 6.69 -2.91 -0.02 5.30 16 Total: -1.00 -61.50 344.52 4.76 -56.74 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 1.17 Total: 14.27 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 3.79 Total: -20.49 kcal Atomic # 7 Polarization: -86.66 SS G_CDS: -0.38 Total: -87.05 kcal Atomic # 8 Polarization: -98.73 SS G_CDS: -3.75 Total: -102.48 kcal Atomic # 9 Polarization: -15.53 SS G_CDS: 2.20 Total: -13.33 kcal Atomic # 14 Polarization: 37.72 SS G_CDS: 2.03 Total: 39.75 kcal Atomic # 16 Polarization: 112.88 SS G_CDS: -0.31 Total: 112.57 kcal Total: -61.50 4.76 -56.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083537800.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.186 kcal (2) G-P(sol) polarization free energy of solvation -61.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds