Wall clock time and date at job start Tue Mar 31 2020 07:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47195 * 2 1 4 4 C 1.35488 * 126.98028 * 270.15554 * 3 2 1 5 5 C 1.50700 * 126.35041 * 359.97438 * 4 3 2 6 6 N 1.30525 * 107.30789 * 180.22452 * 4 3 2 7 7 N 1.28598 * 109.66952 * 359.77105 * 6 4 3 8 8 C 1.30521 * 109.67660 * 0.02562 * 7 6 4 9 9 C 1.50693 * 126.34872 * 179.97438 * 8 7 6 10 10 N 1.46894 * 109.47583 * 90.02019 * 9 8 7 11 11 C 1.46898 * 110.99888 * 293.95420 * 10 9 8 12 12 C 1.46901 * 111.00122 * 170.00041 * 10 9 8 13 13 H 1.08997 * 110.28790 * 60.67103 * 12 10 9 14 14 C 1.54257 * 110.32432 * 298.54666 * 12 10 9 15 15 C 1.54379 * 105.06256 * 241.00265 * 14 12 10 16 16 N 1.48562 * 104.69842 * 336.08765 * 15 14 12 17 17 C 1.46894 * 111.00344 * 159.09785 * 16 15 14 18 18 C 1.53003 * 109.47052 * 69.87193 * 17 16 15 19 19 H 1.09002 * 109.46993 * 55.00140 * 18 17 16 20 20 C 1.47204 * 109.47206 * 295.00402 * 18 17 16 21 21 N 7.15118 * 56.23564 * 119.59026 * 2 1 3 22 22 C 1.52998 * 109.47382 * 174.99917 * 18 17 16 23 23 C 1.50695 * 109.47298 * 185.00113 * 22 18 17 24 24 H 1.07997 * 120.00059 * 0.02562 * 23 22 18 25 25 C 1.37877 * 119.99878 * 180.02562 * 23 22 18 26 26 N 1.31515 * 120.00297 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 119.99835 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47309 * 89.99996 * 27 25 23 29 29 H 1.48503 * 109.47308 * 210.00146 * 27 25 23 30 30 H 1.48501 * 109.47365 * 329.99811 * 27 25 23 31 31 C 1.48856 * 104.07618 * 39.46842 * 16 15 14 32 32 H 1.09005 * 109.46877 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47419 * 299.99813 * 1 2 3 34 34 H 1.09003 * 109.46902 * 60.00498 * 1 2 3 35 35 H 1.08999 * 109.47305 * 239.99651 * 2 1 3 36 36 H 1.09009 * 109.46705 * 119.99885 * 2 1 3 37 37 H 1.08997 * 109.47364 * 270.25196 * 5 4 3 38 38 H 1.09008 * 109.46615 * 30.24871 * 5 4 3 39 39 H 1.09001 * 109.47220 * 150.24239 * 5 4 3 40 40 H 1.09008 * 109.46982 * 330.02022 * 9 8 7 41 41 H 1.08998 * 109.47103 * 210.02438 * 9 8 7 42 42 H 1.09002 * 109.47348 * 296.04408 * 11 10 9 43 43 H 1.08996 * 109.47414 * 56.04732 * 11 10 9 44 44 H 1.09000 * 109.46884 * 176.04403 * 11 10 9 45 45 H 1.08998 * 110.32238 * 122.10637 * 14 12 10 46 46 H 1.08997 * 110.41265 * 359.94164 * 14 12 10 47 47 H 1.09002 * 110.41258 * 94.92615 * 15 14 12 48 48 H 1.09002 * 110.41328 * 217.24846 * 15 14 12 49 49 H 1.09001 * 109.47519 * 189.87201 * 17 16 15 50 50 H 1.09003 * 109.46928 * 309.87844 * 17 16 15 51 51 H 1.08999 * 109.47507 * 305.00764 * 22 18 17 52 52 H 1.08999 * 109.46915 * 65.00063 * 22 18 17 53 53 H 0.97005 * 120.00149 * 180.02562 * 26 25 23 54 54 H 1.09003 * 110.39541 * 201.75499 * 31 16 15 55 55 H 1.08998 * 110.39292 * 79.33352 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2872 2.1506 -1.0823 5 6 2.1400 1.7442 -2.5260 6 7 2.7027 3.3073 -0.6430 7 7 2.7042 3.3067 0.6430 8 6 2.2904 2.1495 1.0825 9 6 2.1469 1.7416 2.5260 10 7 0.7964 2.0757 2.9974 11 6 0.5927 3.5302 3.0234 12 6 0.5381 1.4843 4.3171 13 1 1.2495 1.8674 5.0487 14 6 0.6241 -0.0540 4.2410 15 6 -0.7772 -0.5549 4.6517 16 7 -1.3464 0.5466 5.4701 17 6 -2.8117 0.4594 5.5241 18 6 -3.2199 -0.7533 6.3630 19 1 -2.7518 -0.6897 7.3454 20 6 -2.7809 -1.9863 5.6893 21 7 -2.4445 -2.9356 5.1696 22 6 -4.7413 -0.7737 6.5235 23 6 -5.1338 -1.8956 7.4499 24 1 -4.3740 -2.5304 7.8814 25 6 -6.4628 -2.1118 7.7465 26 7 -7.3880 -1.3392 7.2207 27 14 -6.9491 -3.5020 8.8954 28 1 -6.9750 -3.0026 10.2937 29 1 -8.2968 -4.0030 8.5237 30 1 -5.9623 -4.6059 8.7823 31 6 -0.9079 1.7834 4.7675 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8901 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5139 0.8901 37 1 3.0720 1.2999 -2.8753 38 1 1.3336 1.0164 -2.6181 39 1 1.9075 2.6221 -3.1288 40 1 2.8839 2.2727 3.1286 41 1 2.3085 0.6676 2.6179 42 1 1.2730 3.9795 3.7470 43 1 0.7906 3.9426 2.0340 44 1 -0.4365 3.7479 3.3086 45 1 1.3776 -0.4259 4.9353 46 1 0.8569 -0.3719 3.2247 47 1 -1.3923 -0.7297 3.7690 48 1 -0.6966 -1.4663 5.2443 49 1 -3.2133 1.3660 5.9767 50 1 -3.2068 0.3518 4.5139 51 1 -5.0755 0.1760 6.9411 52 1 -5.2073 -0.9265 5.5500 53 1 -8.3231 -1.4910 7.4297 54 1 -0.9256 2.6340 5.4490 55 1 -1.5434 1.9747 3.9029 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083836828.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:38 Heat of formation + Delta-G solvation = 96.574037 kcal Electronic energy + Delta-G solvation = -32985.809871 eV Core-core repulsion = 28865.624650 eV Total energy + Delta-G solvation = -4120.185221 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 360.233 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -44.16993 -40.71980 -38.71510 -37.03492 -36.73742 -35.68990 -34.14926 -33.38443 -31.71284 -31.47158 -30.29997 -28.86822 -28.25864 -27.65326 -25.42145 -24.91850 -24.34386 -23.62560 -22.22432 -21.88672 -21.43834 -20.70975 -18.61887 -18.30294 -18.08113 -17.44219 -17.24841 -17.05736 -16.53355 -16.12613 -15.83533 -15.55328 -15.42283 -15.11147 -14.91503 -14.67581 -14.49925 -14.21971 -14.17084 -14.03702 -13.89649 -13.79079 -13.68964 -13.60940 -13.49394 -13.16835 -13.15284 -12.98624 -12.84651 -12.79168 -12.53753 -12.40777 -12.31593 -12.22867 -12.19373 -12.01340 -11.94711 -11.90939 -11.71796 -11.35714 -11.29234 -11.12738 -11.11415 -10.54893 -10.09276 -9.49602 -9.43728 -8.19482 -6.27661 0.75818 1.40489 1.42086 1.51152 1.52466 1.76900 1.99085 2.01905 2.41233 2.68688 3.15625 3.17453 3.27099 3.31664 3.47283 3.57316 3.65869 3.68822 3.84435 4.01729 4.08336 4.11822 4.20763 4.27272 4.32083 4.36788 4.38157 4.50312 4.56648 4.59539 4.63048 4.64852 4.70014 4.71745 4.77068 4.84057 4.86878 4.92400 4.94946 4.96291 4.98119 5.02504 5.04927 5.10531 5.11324 5.25018 5.26285 5.46944 5.61507 5.71269 5.79440 5.82605 5.93906 5.99458 6.09011 6.20961 6.77452 6.87785 7.40896 7.72612 8.91361 Molecular weight = 360.23amu Principal moments of inertia in cm(-1) A = 0.018883 B = 0.001921 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.448871 B =14569.556757 C =15071.724107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.099 3.901 3 N -0.458 5.458 4 C 0.175 3.825 5 C -0.066 4.066 6 N -0.346 5.346 7 N -0.330 5.330 8 C 0.186 3.814 9 C 0.141 3.859 10 N -0.533 5.533 11 C 0.028 3.972 12 C 0.090 3.910 13 H 0.069 0.931 14 C -0.110 4.110 15 C 0.030 3.970 16 N -0.511 5.511 17 C 0.064 3.936 18 C 0.020 3.980 19 H 0.121 0.879 20 C 0.256 3.744 21 N -0.501 5.501 22 C 0.039 3.961 23 C -0.537 4.537 24 H 0.054 0.946 25 C 0.010 3.990 26 N -0.923 5.923 27 Si 0.949 3.051 28 H -0.267 1.267 29 H -0.285 1.285 30 H -0.275 1.275 31 C 0.043 3.957 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.113 0.887 42 H 0.038 0.962 43 H 0.052 0.948 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.029 0.971 48 H 0.065 0.935 49 H 0.109 0.891 50 H 0.036 0.964 51 H 0.035 0.965 52 H -0.001 1.001 53 H 0.264 0.736 54 H 0.095 0.905 55 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.855 6.274 -14.983 26.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.022 4.022 3 N -0.149 5.149 4 C -0.093 4.093 5 C -0.125 4.125 6 N -0.186 5.186 7 N -0.170 5.170 8 C -0.084 4.084 9 C 0.011 3.989 10 N -0.259 5.259 11 C -0.120 4.120 12 C -0.018 4.018 13 H 0.087 0.913 14 C -0.148 4.148 15 C -0.098 4.098 16 N -0.235 5.235 17 C -0.065 4.065 18 C -0.002 4.002 19 H 0.138 0.862 20 C -0.060 4.060 21 N -0.179 5.179 22 C 0.000 4.000 23 C -0.575 4.575 24 H 0.072 0.928 25 C -0.189 4.189 26 N -0.563 5.563 27 Si 0.775 3.225 28 H -0.192 1.192 29 H -0.211 1.211 30 H -0.200 1.200 31 C -0.085 4.085 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.140 0.860 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.131 0.869 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.103 0.897 46 H 0.103 0.897 47 H 0.048 0.952 48 H 0.084 0.916 49 H 0.127 0.873 50 H 0.054 0.946 51 H 0.054 0.946 52 H 0.017 0.983 53 H 0.073 0.927 54 H 0.113 0.887 55 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 21.525 6.045 -15.536 27.226 hybrid contribution -1.261 -1.187 0.513 1.806 sum 20.265 4.858 -15.023 25.690 Atomic orbital electron populations 1.22106 0.93537 1.03975 1.02775 1.22211 0.96034 0.77177 1.06776 1.46344 1.48112 1.14918 1.05483 1.25516 1.00967 0.88594 0.94216 1.20420 1.04962 1.03886 0.83206 1.74149 1.21376 1.19577 1.03503 1.74124 1.20445 1.18814 1.03649 1.24738 1.01761 0.88969 0.92891 1.20425 0.91060 1.02733 0.84671 1.62042 1.25178 1.12249 1.26446 1.22348 1.01919 0.86438 1.01280 1.22302 0.96615 0.94586 0.88306 0.91327 1.22414 0.96131 0.93809 1.02466 1.23233 0.96024 0.95397 0.95151 1.65523 1.08879 1.02712 1.46340 1.22235 0.87908 0.97934 0.98428 1.19170 0.98113 0.84330 0.98613 0.86155 1.29326 0.90139 0.94381 0.92127 1.80901 1.12808 1.12374 1.11787 1.18973 0.87730 0.97372 0.95885 1.21534 0.92342 1.15421 1.28246 0.92784 1.25722 0.96925 0.98537 0.97674 1.70034 1.00987 1.40092 1.45213 0.85684 0.77323 0.79709 0.79789 1.19222 1.21065 1.20018 1.23202 0.94635 0.93359 0.97271 0.89133 0.92581 0.92315 0.85951 0.87397 0.87918 0.88317 0.88656 0.90844 0.86877 0.94316 0.92873 0.90607 0.89704 0.89651 0.95243 0.91637 0.87272 0.94615 0.94633 0.98288 0.92732 0.88653 0.93093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 10.24 71.98 0.74 -1.08 16 2 C 0.10 0.85 6.40 86.38 0.55 1.40 16 3 N -0.46 -7.26 2.75 -504.02 -1.38 -8.65 16 4 C 0.18 3.20 8.03 137.98 1.11 4.31 16 5 C -0.07 -0.56 10.06 71.24 0.72 0.16 16 6 N -0.35 -9.14 12.21 -50.15 -0.61 -9.76 16 7 N -0.33 -8.81 11.39 -50.16 -0.57 -9.38 16 8 C 0.19 3.69 6.66 137.97 0.92 4.61 16 9 C 0.14 2.10 5.09 85.56 0.44 2.54 16 10 N -0.53 -8.64 4.54 -896.37 -4.07 -12.71 16 11 C 0.03 0.50 9.13 127.69 1.17 1.67 16 12 C 0.09 1.43 2.79 45.81 0.13 1.56 16 13 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 14 C -0.11 -1.83 6.00 31.49 0.19 -1.64 16 15 C 0.03 0.74 4.71 86.45 0.41 1.14 16 16 N -0.51 -12.18 5.38 -880.66 -4.74 -16.92 16 17 C 0.06 1.79 4.50 86.31 0.39 2.17 16 18 C 0.02 0.69 2.42 -12.60 -0.03 0.66 16 19 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 20 C 0.26 9.89 10.64 89.47 0.95 10.84 16 21 N -0.50 -20.54 17.68 19.97 0.35 -20.19 16 22 C 0.04 1.78 4.42 29.85 0.13 1.92 16 23 C -0.54 -28.15 8.60 25.60 0.22 -27.93 16 24 H 0.05 2.80 7.59 -2.91 -0.02 2.78 16 25 C 0.01 0.56 5.46 84.65 0.46 1.02 16 26 N -0.92 -52.63 13.29 21.45 0.28 -52.35 16 27 Si 0.95 43.04 29.54 68.60 2.03 45.06 16 28 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 29 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 30 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 31 C 0.04 0.82 4.92 86.39 0.42 1.24 16 32 H 0.09 0.80 8.14 -2.38 -0.02 0.79 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.12 0.40 7.82 -2.39 -0.02 0.38 16 36 H 0.11 0.68 7.19 -2.38 -0.02 0.67 16 37 H 0.10 0.52 8.14 -2.39 -0.02 0.51 16 38 H 0.10 0.42 7.87 -2.38 -0.02 0.40 16 39 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.07 1.09 8.12 -2.38 -0.02 1.07 16 41 H 0.11 1.22 5.29 -2.39 -0.01 1.21 16 42 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.05 1.19 6.54 -2.39 -0.02 1.18 16 44 H 0.08 1.27 6.87 -2.39 -0.02 1.25 16 45 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 46 H 0.09 1.21 6.63 -2.39 -0.02 1.19 16 47 H 0.03 0.80 7.72 -2.39 -0.02 0.78 16 48 H 0.07 1.87 5.79 -2.39 -0.01 1.86 16 49 H 0.11 2.72 8.13 -2.39 -0.02 2.70 16 50 H 0.04 1.04 7.88 -2.39 -0.02 1.02 16 51 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 52 H 0.00 -0.07 8.14 -2.39 -0.02 -0.08 16 53 H 0.26 14.28 8.31 -92.70 -0.77 13.51 16 54 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 55 H 0.05 1.05 7.52 -2.39 -0.02 1.03 16 Total: -1.00 -71.33 435.12 1.07 -70.26 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 0.87 Total: 10.02 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 8.91 Total: 4.60 kcal Atomic # 7 Polarization: -119.21 SS G_CDS: -10.74 Total: -129.95 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -71.33 1.07 -70.26 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083836828.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.839 kcal (2) G-P(sol) polarization free energy of solvation -71.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds