Wall clock time and date at job start Tue Mar 31 2020 07:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46499 * 109.47106 * 2 1 4 4 C 1.35491 * 126.97970 * 269.99780 * 3 2 1 5 5 C 1.50702 * 126.34499 * 359.97438 * 4 3 2 6 6 N 1.30516 * 107.30618 * 180.02562 * 4 3 2 7 7 N 1.28595 * 109.67629 * 359.73347 * 6 4 3 8 8 C 1.30520 * 109.66797 * 0.44332 * 7 6 4 9 9 C 1.50698 * 126.34569 * 179.82936 * 8 7 6 10 10 N 1.46901 * 109.47473 * 269.68906 * 9 8 7 11 11 C 1.46908 * 110.99832 * 66.04418 * 10 9 8 12 12 C 1.46901 * 111.00589 * 189.99692 * 10 9 8 13 13 H 1.08997 * 110.27487 * 302.09226 * 12 10 9 14 14 C 1.54599 * 110.38905 * 64.23637 * 12 10 9 15 15 C 1.54933 * 102.92189 * 140.91691 * 14 12 10 16 16 N 1.48537 * 103.22763 * 322.58510 * 15 14 12 17 17 C 1.46895 * 111.00114 * 159.71976 * 16 15 14 18 18 C 1.52994 * 109.47270 * 52.60334 * 17 16 15 19 19 H 1.09009 * 109.47154 * 54.99975 * 18 17 16 20 20 C 1.47200 * 109.47451 * 295.00037 * 18 17 16 21 21 N 8.00272 * 94.83993 * 116.39890 * 2 1 3 22 22 C 1.52996 * 109.47347 * 174.99819 * 18 17 16 23 23 C 1.50702 * 109.47159 * 185.00014 * 22 18 17 24 24 H 1.08002 * 120.00299 * 0.02562 * 23 22 18 25 25 C 1.37884 * 119.99942 * 179.72211 * 23 22 18 26 26 N 1.31514 * 119.99698 * 0.28408 * 25 23 22 27 27 Si 1.86794 * 119.99837 * 180.27476 * 25 23 22 28 28 H 1.48501 * 109.47188 * 90.00793 * 27 25 23 29 29 H 1.48501 * 109.47085 * 210.00372 * 27 25 23 30 30 H 1.48498 * 109.47634 * 330.00608 * 27 25 23 31 31 C 1.47903 * 105.82151 * 39.20621 * 16 15 14 32 32 H 1.08995 * 109.47259 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47163 * 300.00601 * 1 2 3 34 34 H 1.08997 * 109.46607 * 59.99882 * 1 2 3 35 35 H 1.09002 * 109.46681 * 239.99361 * 2 1 3 36 36 H 1.08997 * 109.46607 * 120.00118 * 2 1 3 37 37 H 1.09000 * 109.47006 * 90.00589 * 5 4 3 38 38 H 1.09000 * 109.46908 * 210.00251 * 5 4 3 39 39 H 1.08995 * 109.47331 * 330.00420 * 5 4 3 40 40 H 1.08999 * 109.47639 * 149.69344 * 9 8 7 41 41 H 1.09003 * 109.47246 * 29.68807 * 9 8 7 42 42 H 1.08991 * 109.47256 * 183.96173 * 11 10 9 43 43 H 1.09000 * 109.46970 * 303.95878 * 11 10 9 44 44 H 1.09001 * 109.47029 * 63.95502 * 11 10 9 45 45 H 1.08996 * 110.72323 * 259.27667 * 14 12 10 46 46 H 1.09007 * 110.72117 * 22.37770 * 14 12 10 47 47 H 1.08996 * 110.66838 * 204.15249 * 15 14 12 48 48 H 1.08997 * 110.67035 * 81.01522 * 15 14 12 49 49 H 1.08998 * 109.47324 * 292.60336 * 17 16 15 50 50 H 1.09002 * 109.47421 * 172.60513 * 17 16 15 51 51 H 1.09004 * 109.47066 * 65.00217 * 22 18 17 52 52 H 1.08994 * 109.47405 * 305.00047 * 22 18 17 53 53 H 0.97005 * 119.99651 * 179.97438 * 26 25 23 54 54 H 1.08996 * 109.92057 * 94.01806 * 31 16 15 55 55 H 1.08995 * 109.92339 * 215.32021 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2901 2.1496 -1.0824 5 6 2.1466 1.7417 -2.5260 6 7 2.7003 3.3081 -0.6430 7 7 2.6953 3.3099 0.6430 8 6 2.2906 2.1495 1.0823 9 6 2.1466 1.7418 2.5260 10 7 3.4054 1.1471 2.9948 11 6 4.4824 2.1459 3.0195 12 6 3.2344 0.5247 4.3145 13 1 2.8795 1.2606 5.0360 14 6 2.2461 -0.6609 4.2268 15 6 2.8816 -1.7122 5.1708 16 7 4.3383 -1.5482 4.9307 17 6 5.1208 -2.0960 6.0466 18 6 4.6804 -3.5355 6.3202 19 1 4.7614 -4.1206 5.4040 20 6 3.2834 -3.5415 6.7842 21 7 2.2053 -3.5455 7.1426 22 6 5.5781 -4.1476 7.3972 23 6 5.2247 -5.6012 7.5793 24 1 4.4386 -6.0443 6.9859 25 6 5.9091 -6.3672 8.4992 26 7 6.8665 -5.8277 9.2216 27 14 5.4761 -8.1708 8.7194 28 1 6.2970 -8.9934 7.7949 29 1 5.7507 -8.5783 10.1207 30 1 4.0365 -8.3748 8.4176 31 6 4.5624 -0.0930 4.7902 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 -0.3632 0.5139 -0.8900 35 1 1.8934 -0.5140 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 1.1430 1.9857 -2.8744 38 1 2.8805 2.2761 -3.1292 39 1 2.3124 0.6684 -2.6186 40 1 1.3431 1.0112 2.6189 41 1 1.9121 2.6186 3.1295 42 1 5.4183 1.6642 3.3026 43 1 4.5878 2.5911 2.0302 44 1 4.2403 2.9235 3.7439 45 1 1.2592 -0.3676 4.5848 46 1 2.1878 -1.0398 3.2064 47 1 2.5580 -2.7174 4.9006 48 1 2.6362 -1.4943 6.2102 49 1 4.9562 -1.4902 6.9377 50 1 6.1798 -2.0829 5.7889 51 1 5.4304 -3.6172 8.3380 52 1 6.6211 -4.0628 7.0923 53 1 7.3478 -6.3665 9.8690 54 1 4.8467 0.3335 5.7521 55 1 5.3435 0.0930 4.0531 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083836831.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:43 Heat of formation + Delta-G solvation = 103.147571 kcal Electronic energy + Delta-G solvation = -32743.998685 eV Core-core repulsion = 28624.098514 eV Total energy + Delta-G solvation = -4119.900171 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 360.233 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -44.14763 -40.86982 -38.79700 -36.95638 -36.70040 -35.71171 -34.15351 -33.36781 -31.68898 -31.49527 -30.32535 -28.88347 -28.20834 -27.65516 -25.46810 -24.86388 -24.38790 -23.71388 -22.13869 -21.80825 -21.36734 -20.87618 -18.64241 -18.37064 -17.90889 -17.81793 -17.06303 -17.01457 -16.50488 -16.06253 -15.90527 -15.49476 -15.42498 -15.31962 -14.83028 -14.79575 -14.45648 -14.25980 -14.12478 -14.07014 -13.89820 -13.70583 -13.64003 -13.54095 -13.41507 -13.32529 -13.08676 -13.01838 -12.80590 -12.75001 -12.51588 -12.43162 -12.28984 -12.24888 -12.21434 -11.99269 -11.95929 -11.85571 -11.79678 -11.39430 -11.27401 -11.10361 -11.09094 -10.54946 -10.07875 -9.51712 -9.32764 -8.19501 -6.27750 0.78891 1.40621 1.42249 1.51231 1.54924 1.78820 1.94582 1.97104 2.41318 2.79445 2.99550 3.15510 3.23936 3.30464 3.47728 3.53953 3.69767 3.70005 3.86607 4.04348 4.08206 4.13301 4.16666 4.28662 4.31926 4.36753 4.40684 4.48080 4.52304 4.56383 4.61148 4.66482 4.68879 4.73930 4.76606 4.77845 4.87077 4.88736 4.92186 4.93755 4.97236 5.00239 5.09053 5.12668 5.17169 5.20666 5.28283 5.46697 5.61035 5.78627 5.81589 5.84722 5.95752 6.00176 6.06329 6.20626 6.75386 6.87188 7.40781 7.74696 8.91329 Molecular weight = 360.23amu Principal moments of inertia in cm(-1) A = 0.018098 B = 0.001860 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.796480 B =15051.113766 C =15594.812043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.092 3.908 3 N -0.456 5.456 4 C 0.176 3.824 5 C -0.065 4.065 6 N -0.347 5.347 7 N -0.332 5.332 8 C 0.186 3.814 9 C 0.142 3.858 10 N -0.525 5.525 11 C 0.024 3.976 12 C 0.082 3.918 13 H 0.057 0.943 14 C -0.106 4.106 15 C 0.028 3.972 16 N -0.510 5.510 17 C 0.063 3.937 18 C 0.017 3.983 19 H 0.121 0.879 20 C 0.256 3.744 21 N -0.502 5.502 22 C 0.039 3.961 23 C -0.538 4.538 24 H 0.054 0.946 25 C 0.010 3.990 26 N -0.923 5.923 27 Si 0.950 3.050 28 H -0.267 1.267 29 H -0.286 1.286 30 H -0.275 1.275 31 C 0.041 3.959 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.119 0.881 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.056 0.944 44 H 0.033 0.967 45 H 0.082 0.918 46 H 0.092 0.908 47 H 0.072 0.928 48 H 0.031 0.969 49 H 0.037 0.963 50 H 0.110 0.890 51 H -0.001 1.001 52 H 0.036 0.964 53 H 0.264 0.736 54 H 0.051 0.949 55 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.446 14.267 -22.169 28.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.029 4.029 3 N -0.146 5.146 4 C -0.093 4.093 5 C -0.124 4.124 6 N -0.187 5.187 7 N -0.172 5.172 8 C -0.084 4.084 9 C 0.012 3.988 10 N -0.251 5.251 11 C -0.124 4.124 12 C -0.026 4.026 13 H 0.075 0.925 14 C -0.144 4.144 15 C -0.101 4.101 16 N -0.234 5.234 17 C -0.066 4.066 18 C -0.005 4.005 19 H 0.139 0.861 20 C -0.060 4.060 21 N -0.180 5.180 22 C 0.000 4.000 23 C -0.576 4.576 24 H 0.073 0.927 25 C -0.189 4.189 26 N -0.563 5.563 27 Si 0.775 3.225 28 H -0.192 1.192 29 H -0.211 1.211 30 H -0.200 1.200 31 C -0.087 4.087 32 H 0.119 0.881 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.137 0.863 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.130 0.870 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.075 0.925 44 H 0.052 0.948 45 H 0.100 0.900 46 H 0.111 0.889 47 H 0.091 0.909 48 H 0.049 0.951 49 H 0.055 0.945 50 H 0.128 0.872 51 H 0.018 0.982 52 H 0.054 0.946 53 H 0.073 0.927 54 H 0.070 0.930 55 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.145 14.971 -22.289 29.071 hybrid contribution -0.365 -1.118 1.953 2.280 sum -11.510 13.853 -20.335 27.165 Atomic orbital electron populations 1.22140 0.92621 1.04726 1.02716 1.22285 0.96507 0.77153 1.06921 1.46330 1.48170 1.14784 1.05354 1.25528 1.00757 0.88718 0.94257 1.20419 1.05187 1.03661 0.83100 1.74140 1.21306 1.19845 1.03431 1.74121 1.19961 1.19384 1.03735 1.24659 1.02250 0.88643 0.92802 1.20393 0.93640 0.99909 0.84844 1.62056 1.05141 1.31832 1.26062 1.22427 0.95005 0.93580 1.01343 1.22456 0.95792 0.95704 0.88666 0.92490 1.22570 0.97570 0.93481 1.00821 1.23500 0.88960 1.00038 0.97593 1.64929 1.04904 1.13775 1.39835 1.22328 1.00133 0.92031 0.92138 1.19217 0.82110 0.98260 1.00924 0.86097 1.29342 0.94828 0.90587 0.91205 1.81062 1.14158 1.11273 1.11511 1.18976 0.94845 0.94025 0.92159 1.21536 1.18516 0.96422 1.21100 0.92727 1.25732 0.95029 1.02537 0.95604 1.70036 1.23744 1.37734 1.24791 0.85676 0.78533 0.80805 0.77448 1.19179 1.21124 1.19986 1.23045 0.97864 0.86966 1.00778 0.88127 0.92741 0.91774 0.86328 0.87650 0.88149 0.88661 0.88015 0.86987 0.91345 0.90042 0.92546 0.94832 0.89967 0.88931 0.90947 0.95053 0.94453 0.87230 0.98244 0.94616 0.92741 0.93039 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 10.24 71.99 0.74 -0.17 16 2 C 0.09 0.73 6.40 86.38 0.55 1.28 16 3 N -0.46 -7.12 2.75 -504.01 -1.38 -8.51 16 4 C 0.18 3.15 8.03 137.98 1.11 4.26 16 5 C -0.06 -0.51 10.24 71.24 0.73 0.22 16 6 N -0.35 -9.15 12.21 -50.16 -0.61 -9.76 16 7 N -0.33 -8.93 11.41 -50.16 -0.57 -9.50 16 8 C 0.19 3.75 6.65 137.98 0.92 4.66 16 9 C 0.14 2.24 5.02 85.56 0.43 2.67 16 10 N -0.53 -8.90 4.56 -896.41 -4.09 -12.99 16 11 C 0.02 0.44 9.05 127.69 1.16 1.60 16 12 C 0.08 1.41 2.72 45.80 0.12 1.54 16 13 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 14 C -0.11 -1.85 5.44 31.80 0.17 -1.68 16 15 C 0.03 0.68 4.35 86.65 0.38 1.06 16 16 N -0.51 -12.36 5.40 -883.05 -4.76 -17.12 16 17 C 0.06 1.74 4.71 86.30 0.41 2.15 16 18 C 0.02 0.58 2.29 -12.60 -0.03 0.55 16 19 H 0.12 4.00 8.14 -2.38 -0.02 3.98 16 20 C 0.26 9.76 9.68 89.44 0.87 10.62 16 21 N -0.50 -20.42 17.37 20.01 0.35 -20.07 16 22 C 0.04 1.76 4.42 29.85 0.13 1.89 16 23 C -0.54 -28.05 8.60 25.60 0.22 -27.83 16 24 H 0.05 2.81 7.59 -2.91 -0.02 2.79 16 25 C 0.01 0.54 5.46 84.66 0.46 1.00 16 26 N -0.92 -52.57 13.29 21.45 0.28 -52.28 16 27 Si 0.95 42.89 29.54 68.60 2.03 44.92 16 28 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 29 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 30 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 31 C 0.04 0.82 5.90 86.45 0.51 1.33 16 32 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.12 0.44 7.20 -2.39 -0.02 0.42 16 36 H 0.11 0.89 7.78 -2.39 -0.02 0.87 16 37 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.10 0.30 7.21 -2.39 -0.02 0.28 16 40 H 0.11 1.32 6.64 -2.39 -0.02 1.30 16 41 H 0.07 1.11 8.12 -2.39 -0.02 1.09 16 42 H 0.08 1.38 6.08 -2.39 -0.01 1.36 16 43 H 0.06 1.27 6.55 -2.39 -0.02 1.26 16 44 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.09 1.46 7.96 -2.38 -0.02 1.45 16 47 H 0.07 2.02 6.52 -2.39 -0.02 2.00 16 48 H 0.03 0.91 6.33 -2.39 -0.02 0.89 16 49 H 0.04 1.06 7.81 -2.39 -0.02 1.05 16 50 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 51 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 52 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 53 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 54 H 0.05 1.01 7.57 -2.39 -0.02 0.99 16 55 H 0.10 1.87 6.03 -2.39 -0.01 1.86 16 Total: -1.00 -71.33 432.44 0.99 -70.34 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 0.88 Total: 9.82 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 8.87 Total: 5.15 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -10.79 Total: -130.23 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -71.33 0.99 -70.34 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083836831.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.489 kcal (2) G-P(sol) polarization free energy of solvation -71.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds