Wall clock time and date at job start Tue Mar 31 2020 07:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46900 * 2 1 4 4 C 1.50701 * 109.47294 * 119.99526 * 2 1 3 5 5 C 1.34333 * 126.44092 * 119.99888 * 4 2 1 6 6 N 1.34470 * 107.66795 * 180.02562 * 5 4 2 7 7 C 1.30257 * 108.70577 * 0.02562 * 6 5 4 8 8 C 1.50691 * 125.62250 * 179.97438 * 7 6 5 9 9 N 1.46900 * 109.47167 * 90.02568 * 8 7 6 10 10 C 1.46903 * 111.00165 * 66.04427 * 9 8 7 11 11 C 1.46901 * 111.00307 * 189.99830 * 9 8 7 12 12 H 1.08994 * 110.27285 * 301.74888 * 11 9 8 13 13 C 1.54596 * 110.30917 * 179.65593 * 11 9 8 14 14 C 1.55102 * 102.84187 * 219.18529 * 13 11 9 15 15 N 1.48534 * 103.28766 * 37.30954 * 14 13 11 16 16 C 1.46898 * 111.00254 * 200.33109 * 15 14 13 17 17 C 1.53001 * 109.46822 * 287.39701 * 16 15 14 18 18 H 1.08990 * 109.47410 * 54.99958 * 17 16 15 19 19 C 1.47197 * 109.46787 * 294.99392 * 17 16 15 20 20 N 9.35464 * 168.16434 * 176.82277 * 4 1 2 21 21 C 1.53002 * 109.46554 * 174.99992 * 17 16 15 22 22 C 1.50707 * 109.46656 * 184.99666 * 21 17 16 23 23 H 1.07997 * 120.00127 * 0.02562 * 22 21 17 24 24 C 1.37881 * 119.99706 * 179.97438 * 22 21 17 25 25 N 1.31513 * 120.00015 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99781 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47078 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.46627 * 120.00037 * 26 24 22 29 29 H 1.48493 * 109.47191 * 239.99982 * 26 24 22 30 30 C 1.47903 * 105.81539 * 320.84206 * 15 14 13 31 31 O 1.33969 * 108.75525 * 0.22475 * 7 6 5 32 32 H 1.08999 * 109.47067 * 60.00132 * 1 2 3 33 33 H 1.09002 * 109.46769 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47424 * 299.99942 * 1 2 3 35 35 H 1.08997 * 109.47424 * 240.00058 * 2 1 3 36 36 H 1.08997 * 109.47410 * 179.97438 * 3 2 1 37 37 H 1.08999 * 109.47153 * 299.99815 * 3 2 1 38 38 H 1.09005 * 109.47061 * 60.00137 * 3 2 1 39 39 H 1.08000 * 126.16522 * 0.06922 * 5 4 2 40 40 H 1.08995 * 109.47690 * 330.02326 * 8 7 6 41 41 H 1.09001 * 109.47281 * 210.02073 * 8 7 6 42 42 H 1.09004 * 109.46933 * 55.97169 * 10 9 8 43 43 H 1.09000 * 109.47427 * 175.97157 * 10 9 8 44 44 H 1.08997 * 109.46913 * 295.97632 * 10 9 8 45 45 H 1.09000 * 110.72561 * 337.48669 * 13 11 9 46 46 H 1.09005 * 110.72121 * 100.77201 * 13 11 9 47 47 H 1.08996 * 110.59600 * 278.87104 * 14 13 11 48 48 H 1.09004 * 110.68081 * 155.78334 * 14 13 11 49 49 H 1.09004 * 109.46701 * 47.38989 * 16 15 14 50 50 H 1.08999 * 109.47224 * 167.39153 * 16 15 14 51 51 H 1.09001 * 109.47288 * 304.99268 * 21 17 16 52 52 H 1.09001 * 109.47521 * 65.00088 * 21 17 16 53 53 H 0.96996 * 119.99603 * 179.97438 * 25 24 22 54 54 H 1.09001 * 109.91894 * 265.97689 * 30 15 14 55 55 H 1.09004 * 109.91718 * 144.68194 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.8078 -1.8069 1.2582 6 7 3.0277 -2.1188 2.5476 7 6 2.4125 -1.2501 3.2983 8 6 2.4049 -1.2417 4.8052 9 7 3.5328 -0.4386 5.2960 10 6 3.3669 0.9764 4.9378 11 6 3.7008 -0.5981 6.7467 12 1 2.7886 -0.3061 7.2669 13 6 4.8963 0.2464 7.2444 14 6 5.5555 -0.6784 8.3007 15 7 5.4070 -2.0327 7.7091 16 6 5.5260 -3.0733 8.7391 17 6 6.9857 -3.1863 9.1835 18 1 7.3431 -2.2095 9.5091 19 6 7.8064 -3.6585 8.0564 20 7 8.4386 -4.0257 7.1868 21 6 7.0905 -4.1800 10.3421 22 6 8.5055 -4.2000 10.8603 23 1 9.2549 -3.5670 10.4086 24 6 8.8431 -5.0257 11.9116 25 7 7.9303 -5.7962 12.4619 26 14 10.5972 -5.0510 12.5534 27 1 11.4251 -4.1001 11.7689 28 1 10.6067 -4.6516 13.9837 29 1 11.1540 -6.4210 12.4183 30 6 4.0660 -2.0553 7.0854 31 8 1.7830 -0.3687 2.5099 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8899 35 1 1.8934 -0.5138 -0.8899 36 1 3.1299 1.4426 0.0005 37 1 1.6766 1.9564 -0.8900 38 1 1.6766 1.9564 0.8900 39 1 3.1868 -2.3412 0.3996 40 1 2.4980 -2.2628 5.1748 41 1 1.4695 -0.8102 5.1614 42 1 2.4127 1.3386 5.3205 43 1 4.1782 1.5592 5.3740 44 1 3.3867 1.0812 3.8530 45 1 5.5883 0.4540 6.4283 46 1 4.5498 1.1726 7.7029 47 1 5.0258 -0.6136 9.2511 48 1 6.6086 -0.4277 8.4282 49 1 4.9050 -2.8096 9.5953 50 1 5.1954 -4.0283 8.3308 51 1 6.4148 -3.8778 11.1423 52 1 6.8174 -5.1758 9.9927 53 1 8.1679 -6.3774 13.2012 54 1 3.3383 -2.4677 7.7843 55 1 4.0902 -2.6533 6.1744 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084630710.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:27 Heat of formation + Delta-G solvation = 28.217744 kcal Electronic energy + Delta-G solvation = -31943.732370 eV Core-core repulsion = 27788.290246 eV Total energy + Delta-G solvation = -4155.442124 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 360.227 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -44.36640 -40.58449 -38.53866 -37.19523 -36.54752 -35.73279 -35.52356 -33.97903 -32.01158 -30.67198 -29.92487 -28.11557 -28.10371 -28.01167 -25.29857 -24.65757 -23.71845 -23.50538 -22.74771 -21.86743 -21.24655 -20.88765 -18.56336 -18.15312 -18.01393 -17.86818 -17.33183 -16.86223 -16.48613 -16.38596 -15.92081 -15.62017 -15.52866 -15.23676 -14.90513 -14.71891 -14.55432 -14.32045 -14.24264 -14.07793 -13.91584 -13.77173 -13.55040 -13.42107 -13.14902 -13.11452 -13.02557 -12.86673 -12.72741 -12.60201 -12.52924 -12.42444 -12.37619 -12.22384 -12.19759 -12.10165 -11.99263 -11.92114 -11.84031 -11.65058 -11.41662 -11.33779 -11.08706 -10.54464 -9.74003 -9.40096 -9.20050 -8.18563 -6.26366 0.40542 1.39316 1.42660 1.53141 1.57536 1.68471 2.09031 2.16892 2.42369 2.82358 3.05923 3.11335 3.17102 3.38407 3.58625 3.61720 3.81282 3.88379 3.98611 4.09680 4.14514 4.17406 4.28335 4.29924 4.37020 4.40795 4.47003 4.49050 4.53016 4.68288 4.69036 4.71829 4.72144 4.77317 4.82720 4.84711 4.88311 4.94088 4.97540 4.97659 5.01046 5.03235 5.09465 5.13713 5.27458 5.27648 5.29546 5.33493 5.48109 5.63471 5.80387 5.86606 5.98152 6.11536 6.14469 6.25225 6.77347 6.84739 6.95943 7.42053 8.92481 Molecular weight = 360.23amu Principal moments of inertia in cm(-1) A = 0.022002 B = 0.001643 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.322216 B =17039.889817 C =17438.606103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.008 4.008 3 C -0.146 4.146 4 C -0.033 4.033 5 C -0.066 4.066 6 N -0.501 5.501 7 C 0.189 3.811 8 C 0.151 3.849 9 N -0.544 5.544 10 C 0.027 3.973 11 C 0.085 3.915 12 H 0.077 0.923 13 C -0.107 4.107 14 C 0.031 3.969 15 N -0.536 5.536 16 C 0.065 3.935 17 C 0.025 3.975 18 H 0.115 0.885 19 C 0.266 3.734 20 N -0.518 5.518 21 C 0.038 3.962 22 C -0.538 4.538 23 H 0.052 0.948 24 C 0.012 3.988 25 N -0.922 5.922 26 Si 0.948 3.052 27 H -0.271 1.271 28 H -0.271 1.271 29 H -0.286 1.286 30 C 0.041 3.959 31 O -0.204 6.204 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.122 0.878 36 H 0.052 0.948 37 H 0.088 0.912 38 H 0.050 0.950 39 H 0.197 0.803 40 H 0.116 0.884 41 H 0.086 0.914 42 H 0.045 0.955 43 H 0.083 0.917 44 H 0.049 0.951 45 H 0.069 0.931 46 H 0.097 0.903 47 H 0.066 0.934 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.070 0.930 51 H 0.038 0.962 52 H 0.000 1.000 53 H 0.264 0.736 54 H 0.065 0.935 55 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.592 19.575 -20.302 35.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.026 4.026 3 C -0.203 4.203 4 C -0.087 4.087 5 C -0.204 4.204 6 N -0.231 5.231 7 C -0.018 4.018 8 C 0.023 3.977 9 N -0.270 5.270 10 C -0.121 4.121 11 C -0.023 4.023 12 H 0.095 0.905 13 C -0.146 4.146 14 C -0.097 4.097 15 N -0.261 5.261 16 C -0.064 4.064 17 C 0.003 3.997 18 H 0.133 0.867 19 C -0.050 4.050 20 N -0.196 5.196 21 C -0.001 4.001 22 C -0.576 4.576 23 H 0.070 0.930 24 C -0.187 4.187 25 N -0.562 5.562 26 Si 0.774 3.226 27 H -0.195 1.195 28 H -0.197 1.197 29 H -0.212 1.212 30 C -0.087 4.087 31 O -0.090 6.090 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.140 0.860 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.214 0.786 40 H 0.133 0.867 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.102 0.898 44 H 0.068 0.932 45 H 0.088 0.912 46 H 0.116 0.884 47 H 0.085 0.915 48 H 0.095 0.905 49 H 0.095 0.905 50 H 0.089 0.911 51 H 0.056 0.944 52 H 0.018 0.982 53 H 0.073 0.927 54 H 0.083 0.917 55 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.516 18.159 -21.826 34.453 hybrid contribution -0.532 0.221 1.380 1.495 sum -20.048 18.380 -20.446 34.026 Atomic orbital electron populations 1.21861 0.92689 1.02499 1.03248 1.19974 0.97075 0.96217 0.89354 1.21863 1.01146 0.94081 1.03258 1.24048 1.01886 0.98524 0.84217 1.23506 1.03201 0.98662 0.95042 1.70436 1.21613 1.27638 1.03387 1.26294 0.93302 0.86036 0.96193 1.20499 0.94529 1.01805 0.80858 1.61932 1.41095 1.09674 1.14279 1.22414 1.01652 0.87348 1.00676 1.22504 0.98870 0.95187 0.85742 0.90515 1.22594 0.96051 0.97796 0.98110 1.23380 1.01680 0.87724 0.96915 1.64693 1.29046 1.03628 1.28709 1.22230 0.93538 0.96131 0.94523 1.19146 0.91955 1.01138 0.87470 0.86690 1.29429 0.91952 0.91039 0.92589 1.80980 1.12325 1.11807 1.14462 1.19003 0.96409 0.93011 0.91639 1.21577 0.96419 1.23528 1.16074 0.92951 1.25696 1.00785 0.95154 0.97052 1.70035 1.34878 1.26285 1.25044 0.85647 0.80685 0.77691 0.78569 1.19507 1.19653 1.21206 1.22957 0.89539 0.96717 0.99457 1.84359 1.58993 1.48743 1.16940 0.89340 0.92548 0.93085 0.85980 0.92874 0.89298 0.93062 0.78599 0.86655 0.89636 0.93630 0.89836 0.93240 0.91211 0.88416 0.91549 0.90478 0.90466 0.91102 0.94382 0.98191 0.92736 0.91719 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.18 71.98 0.66 -0.53 16 2 C -0.01 -0.08 3.33 -11.54 -0.04 -0.11 16 3 C -0.15 -1.30 9.18 71.98 0.66 -0.64 16 4 C -0.03 -0.59 5.89 24.79 0.15 -0.44 16 5 C -0.07 -1.40 11.79 83.40 0.98 -0.42 16 6 N -0.50 -13.51 11.29 -303.84 -3.43 -16.95 16 7 C 0.19 4.28 6.91 88.34 0.61 4.89 16 8 C 0.15 2.69 5.37 85.55 0.46 3.15 16 9 N -0.54 -10.20 4.53 -896.46 -4.06 -14.26 16 10 C 0.03 0.41 9.11 127.69 1.16 1.57 16 11 C 0.08 1.41 2.72 45.79 0.12 1.54 16 12 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 13 C -0.11 -1.81 5.36 31.86 0.17 -1.64 16 14 C 0.03 0.64 5.91 86.71 0.51 1.15 16 15 N -0.54 -14.12 4.95 -882.65 -4.37 -18.48 16 16 C 0.07 1.89 4.07 86.30 0.35 2.24 16 17 C 0.02 0.92 2.24 -12.60 -0.03 0.89 16 18 H 0.12 3.92 7.18 -2.39 -0.02 3.90 16 19 C 0.27 11.65 13.67 89.44 1.22 12.88 16 20 N -0.52 -25.00 18.54 20.01 0.37 -24.63 16 21 C 0.04 1.78 4.42 29.85 0.13 1.92 16 22 C -0.54 -28.91 8.60 25.60 0.22 -28.69 16 23 H 0.05 2.81 7.59 -2.91 -0.02 2.79 16 24 C 0.01 0.66 5.46 84.66 0.46 1.13 16 25 N -0.92 -53.20 13.29 21.45 0.28 -52.92 16 26 Si 0.95 43.95 29.54 68.60 2.03 45.97 16 27 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 28 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 29 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 30 C 0.04 0.88 5.74 86.45 0.50 1.38 16 31 O -0.20 -4.16 10.30 -3.72 -0.04 -4.20 16 32 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.12 0.74 8.11 -2.39 -0.02 0.72 16 36 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 39 H 0.20 3.13 8.06 -2.91 -0.02 3.11 16 40 H 0.12 2.11 6.35 -2.39 -0.02 2.10 16 41 H 0.09 1.09 8.09 -2.39 -0.02 1.07 16 42 H 0.05 0.54 8.10 -2.39 -0.02 0.52 16 43 H 0.08 1.17 6.43 -2.39 -0.02 1.15 16 44 H 0.05 0.91 7.03 -2.39 -0.02 0.89 16 45 H 0.07 1.43 7.50 -2.39 -0.02 1.42 16 46 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 47 H 0.07 1.18 7.81 -2.39 -0.02 1.16 16 48 H 0.08 1.76 7.68 -2.38 -0.02 1.74 16 49 H 0.08 1.92 7.83 -2.39 -0.02 1.90 16 50 H 0.07 2.17 8.08 -2.39 -0.02 2.15 16 51 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 52 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 53 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 54 H 0.06 1.16 7.77 -2.39 -0.02 1.15 16 55 H 0.07 1.79 6.67 -2.38 -0.02 1.77 16 Total: -1.00 -72.93 442.71 -0.04 -72.97 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.86 Total: 12.22 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 8.31 Total: 0.27 kcal Atomic # 7 Polarization: -116.03 SS G_CDS: -11.20 Total: -127.23 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.04 Total: -4.20 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -72.93 -0.04 -72.97 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084630710.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.193 kcal (2) G-P(sol) polarization free energy of solvation -72.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds