Wall clock time and date at job start Tue Mar 31 2020 07:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47002 * 2 1 4 4 C 1.50701 * 109.47065 * 119.99599 * 2 1 3 5 5 C 1.34334 * 126.44021 * 120.00081 * 4 2 1 6 6 N 1.34477 * 107.66725 * 179.97438 * 5 4 2 7 7 C 1.30249 * 108.70227 * 0.02562 * 6 5 4 8 8 C 1.50702 * 125.62249 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.47202 * 90.01680 * 8 7 6 10 10 C 1.46907 * 110.99437 * 66.05275 * 9 8 7 11 11 C 1.46901 * 110.99930 * 190.00092 * 9 8 7 12 12 H 1.09004 * 110.64528 * 298.30378 * 11 9 8 13 13 C 1.54587 * 110.72367 * 61.46051 * 11 9 8 14 14 C 1.53994 * 105.14377 * 140.49043 * 13 11 9 15 15 N 1.47909 * 107.05267 * 1.22509 * 14 13 11 16 16 C 1.46904 * 110.99733 * 214.15428 * 15 14 13 17 17 C 1.53001 * 109.47370 * 294.33643 * 16 15 14 18 18 H 1.08994 * 109.46909 * 54.76496 * 17 16 15 19 19 C 1.47199 * 109.46654 * 294.76784 * 17 16 15 20 20 N 9.45724 * 150.26041 * 111.33822 * 7 1 2 21 21 C 1.52997 * 109.47305 * 174.76978 * 17 16 15 22 22 C 1.50704 * 109.47086 * 184.99848 * 21 17 16 23 23 H 1.07998 * 119.99601 * 359.97438 * 22 21 17 24 24 C 1.37878 * 119.99546 * 179.97438 * 22 21 17 25 25 N 1.31511 * 120.00638 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99450 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47260 * 0.02562 * 26 24 22 28 28 H 1.48508 * 109.46729 * 120.00199 * 26 24 22 29 29 H 1.48493 * 109.47334 * 239.99912 * 26 24 22 30 30 C 1.48529 * 105.82098 * 334.66696 * 15 14 13 31 31 O 1.33972 * 108.76234 * 0.22117 * 7 6 5 32 32 H 1.09004 * 109.46434 * 179.97438 * 1 2 3 33 33 H 1.08990 * 109.47206 * 299.99825 * 1 2 3 34 34 H 1.08996 * 109.46750 * 60.00555 * 1 2 3 35 35 H 1.08996 * 109.47595 * 240.00338 * 2 1 3 36 36 H 1.08999 * 109.47251 * 179.97438 * 3 2 1 37 37 H 1.08995 * 109.47203 * 300.00071 * 3 2 1 38 38 H 1.09004 * 109.47032 * 59.99783 * 3 2 1 39 39 H 1.08004 * 126.16678 * 359.95316 * 5 4 2 40 40 H 1.09003 * 109.46550 * 330.02369 * 8 7 6 41 41 H 1.08993 * 109.47193 * 210.02464 * 8 7 6 42 42 H 1.09002 * 109.46977 * 183.95154 * 10 9 8 43 43 H 1.08998 * 109.46677 * 303.94980 * 10 9 8 44 44 H 1.09001 * 109.47252 * 63.95336 * 10 9 8 45 45 H 1.09005 * 110.31024 * 21.57428 * 13 11 9 46 46 H 1.08995 * 110.39395 * 259.45032 * 13 11 9 47 47 H 1.08998 * 109.92119 * 241.87688 * 14 13 11 48 48 H 1.09000 * 110.08480 * 120.66551 * 14 13 11 49 49 H 1.08997 * 109.47193 * 174.33361 * 16 15 14 50 50 H 1.09003 * 109.47127 * 54.33450 * 16 15 14 51 51 H 1.09007 * 109.46896 * 305.00010 * 21 17 16 52 52 H 1.08995 * 109.47561 * 64.99248 * 21 17 16 53 53 H 0.96993 * 120.00383 * 179.97438 * 25 24 22 54 54 H 1.09000 * 110.66349 * 157.64430 * 30 15 14 55 55 H 1.09003 * 110.67161 * 280.77547 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.8078 -1.8069 1.2582 6 7 3.0286 -2.1182 2.5476 7 6 2.4139 -1.2492 3.2983 8 6 2.4073 -1.2399 4.8052 9 7 3.5356 -0.4368 5.2949 10 6 3.3695 0.9781 4.9361 11 6 3.7045 -0.5956 6.7455 12 1 2.8181 -0.2477 7.2760 13 6 4.0131 -2.0677 7.1024 14 6 5.0734 -1.9977 8.2170 15 7 5.3211 -0.5655 8.4906 16 6 6.7260 -0.3339 8.8521 17 6 7.0310 -1.0252 10.1825 18 1 6.7648 -2.0799 10.1133 19 6 6.2483 -0.3910 11.2557 20 7 5.6431 0.0956 12.0848 21 6 8.5232 -0.8952 10.4945 22 6 8.8461 -1.6794 11.7403 23 1 8.0650 -2.2164 12.2579 24 6 10.1387 -1.7112 12.2191 25 7 11.0897 -1.0569 11.5891 26 14 10.5388 -2.6827 13.7637 27 1 9.3025 -3.3237 14.2794 28 1 11.5422 -3.7297 13.4438 29 1 11.0898 -1.7676 14.7952 30 6 4.9680 0.1528 7.2395 31 8 1.7839 -0.3680 2.5099 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 -0.3633 0.5137 -0.8900 35 1 1.8934 -0.5137 -0.8900 36 1 3.1300 1.4426 0.0005 37 1 1.6767 1.9564 -0.8899 38 1 1.6766 1.9564 0.8900 39 1 3.1854 -2.3423 0.3996 40 1 2.5006 -2.2610 5.1752 41 1 1.4722 -0.8083 5.1618 42 1 4.2509 1.5381 5.2487 43 1 3.2465 1.0670 3.8567 44 1 2.4880 1.3788 5.4366 45 1 4.4115 -2.5921 6.2337 46 1 3.1148 -2.5669 7.4656 47 1 5.9941 -2.4769 7.8843 48 1 4.7034 -2.4891 9.1169 49 1 6.9044 0.7369 8.9498 50 1 7.3730 -0.7406 8.0747 51 1 9.1045 -1.2851 9.6588 52 1 8.7716 0.1544 10.6513 53 1 11.9989 -1.0790 11.9262 54 1 4.7394 1.1981 7.4474 55 1 5.7731 0.0720 6.5091 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084630712.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:32 Heat of formation + Delta-G solvation = 25.882382 kcal Electronic energy + Delta-G solvation = -31755.845165 eV Core-core repulsion = 27600.301772 eV Total energy + Delta-G solvation = -4155.543393 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 360.227 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -44.35018 -40.59032 -38.57219 -37.22595 -36.53604 -35.71045 -35.53916 -33.98962 -31.71525 -31.35683 -29.36397 -28.30223 -28.10077 -27.98308 -25.59175 -24.43926 -23.69910 -23.57794 -22.71922 -21.78441 -21.24623 -20.95845 -18.55571 -18.13616 -17.93280 -17.90029 -17.27910 -16.90970 -16.51267 -16.39080 -15.94322 -15.68117 -15.47522 -15.23161 -14.84340 -14.75084 -14.52510 -14.33718 -14.28809 -14.06714 -13.98343 -13.86029 -13.60832 -13.49525 -13.12440 -13.09224 -13.01588 -12.98547 -12.84802 -12.56172 -12.51727 -12.44500 -12.35749 -12.23493 -12.20212 -12.12572 -11.98567 -11.90058 -11.81720 -11.55966 -11.41529 -11.37095 -11.10043 -10.55362 -9.73360 -9.44259 -9.33660 -8.19136 -6.27399 0.41999 1.39492 1.42490 1.53029 1.58944 1.70481 2.06774 2.13907 2.41798 2.68155 3.06538 3.16033 3.22887 3.37977 3.54378 3.62580 3.76194 3.89586 4.01384 4.10913 4.14844 4.18607 4.20557 4.29931 4.34789 4.39868 4.43408 4.50080 4.51943 4.67757 4.70346 4.71631 4.72407 4.74739 4.84054 4.86468 4.89296 4.94337 4.95391 4.97590 5.00357 5.05268 5.11621 5.15382 5.24090 5.28335 5.31298 5.35280 5.46795 5.61237 5.78587 5.80605 5.82924 6.04860 6.09437 6.22035 6.77894 6.83416 6.93361 7.41266 8.91969 Molecular weight = 360.23amu Principal moments of inertia in cm(-1) A = 0.022891 B = 0.001542 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.891489 B =18153.995412 C =18364.094214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.008 4.008 3 C -0.147 4.147 4 C -0.036 4.036 5 C -0.062 4.062 6 N -0.493 5.493 7 C 0.187 3.813 8 C 0.153 3.847 9 N -0.537 5.537 10 C 0.024 3.976 11 C 0.090 3.910 12 H 0.065 0.935 13 C -0.118 4.118 14 C 0.031 3.969 15 N -0.531 5.531 16 C 0.066 3.934 17 C 0.023 3.977 18 H 0.115 0.885 19 C 0.267 3.733 20 N -0.512 5.512 21 C 0.037 3.963 22 C -0.538 4.538 23 H 0.054 0.946 24 C 0.011 3.989 25 N -0.923 5.923 26 Si 0.949 3.051 27 H -0.269 1.269 28 H -0.273 1.273 29 H -0.285 1.285 30 C 0.049 3.951 31 O -0.207 6.207 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.125 0.875 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.048 0.952 39 H 0.201 0.799 40 H 0.124 0.876 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.057 0.943 44 H 0.041 0.959 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.055 0.945 48 H 0.077 0.923 49 H 0.076 0.924 50 H 0.068 0.932 51 H 0.034 0.966 52 H 0.002 0.998 53 H 0.264 0.736 54 H 0.082 0.918 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.285 1.384 -28.428 36.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.026 4.026 3 C -0.205 4.205 4 C -0.089 4.089 5 C -0.200 4.200 6 N -0.223 5.223 7 C -0.020 4.020 8 C 0.025 3.975 9 N -0.262 5.262 10 C -0.124 4.124 11 C -0.018 4.018 12 H 0.083 0.917 13 C -0.157 4.157 14 C -0.097 4.097 15 N -0.255 5.255 16 C -0.063 4.063 17 C 0.001 3.999 18 H 0.132 0.868 19 C -0.049 4.049 20 N -0.190 5.190 21 C -0.002 4.002 22 C -0.576 4.576 23 H 0.072 0.928 24 C -0.187 4.187 25 N -0.563 5.563 26 Si 0.775 3.225 27 H -0.193 1.193 28 H -0.198 1.198 29 H -0.211 1.211 30 C -0.079 4.079 31 O -0.094 6.094 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.142 0.858 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.067 0.933 39 H 0.218 0.782 40 H 0.142 0.858 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.100 0.900 46 H 0.105 0.895 47 H 0.073 0.927 48 H 0.095 0.905 49 H 0.095 0.905 50 H 0.086 0.914 51 H 0.052 0.948 52 H 0.020 0.980 53 H 0.073 0.927 54 H 0.100 0.900 55 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.587 1.701 -26.687 35.004 hybrid contribution 0.504 -0.007 0.243 0.559 sum -22.083 1.694 -26.444 34.494 Atomic orbital electron populations 1.21864 0.92891 1.02521 1.03107 1.19966 0.96928 0.96147 0.89578 1.21869 1.01249 0.94227 1.03113 1.24047 1.02056 0.98708 0.84104 1.23528 1.02916 0.98409 0.95138 1.70410 1.21465 1.27257 1.03178 1.26246 0.93491 0.86165 0.96087 1.20467 0.94232 1.01930 0.80920 1.61955 1.41115 1.09531 1.13648 1.22438 1.01695 0.87554 1.00724 1.22445 0.97595 0.96486 0.85279 0.91689 1.22472 0.99510 0.95484 0.98186 1.22933 0.98943 0.89061 0.98723 1.64763 1.20543 1.08438 1.31804 1.22209 0.88745 1.01028 0.94358 1.19135 0.93870 0.99437 0.87422 0.86751 1.29289 0.90879 0.91793 0.92954 1.80971 1.13608 1.11822 1.12604 1.19002 0.88265 0.96344 0.96546 1.21571 0.94057 1.30877 1.11107 0.92782 1.25712 0.96561 0.96546 0.99924 1.70036 1.01676 1.43331 1.41264 0.85633 0.78362 0.78725 0.79790 1.19338 1.19838 1.21104 1.23152 0.96583 0.98249 0.89903 1.84376 1.59057 1.48847 1.17084 0.92400 0.93300 0.89486 0.85756 0.92688 0.89449 0.93296 0.78233 0.85805 0.90336 0.90392 0.92437 0.94084 0.89991 0.89483 0.92699 0.90504 0.90506 0.91355 0.94781 0.97983 0.92730 0.90010 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.18 71.98 0.66 -0.40 16 2 C -0.01 -0.06 3.33 -11.54 -0.04 -0.10 16 3 C -0.15 -1.19 9.18 71.98 0.66 -0.53 16 4 C -0.04 -0.56 5.89 24.79 0.15 -0.41 16 5 C -0.06 -1.09 11.79 83.40 0.98 -0.11 16 6 N -0.49 -11.21 11.29 -303.82 -3.43 -14.64 16 7 C 0.19 3.73 6.91 88.34 0.61 4.34 16 8 C 0.15 2.41 5.44 85.56 0.47 2.87 16 9 N -0.54 -9.32 4.59 -894.51 -4.11 -13.43 16 10 C 0.02 0.38 9.18 127.69 1.17 1.55 16 11 C 0.09 1.59 2.74 46.12 0.13 1.72 16 12 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 13 C -0.12 -2.06 5.31 31.47 0.17 -1.89 16 14 C 0.03 0.70 5.52 86.44 0.48 1.17 16 15 N -0.53 -13.53 5.00 -882.99 -4.42 -17.95 16 16 C 0.07 1.93 4.10 86.30 0.35 2.28 16 17 C 0.02 0.85 2.17 -12.60 -0.03 0.82 16 18 H 0.11 3.88 7.18 -2.39 -0.02 3.86 16 19 C 0.27 11.16 13.67 89.44 1.22 12.38 16 20 N -0.51 -23.33 18.54 20.01 0.37 -22.96 16 21 C 0.04 1.74 4.42 29.85 0.13 1.87 16 22 C -0.54 -28.76 8.60 25.60 0.22 -28.54 16 23 H 0.05 2.87 7.59 -2.91 -0.02 2.85 16 24 C 0.01 0.63 5.46 84.66 0.46 1.10 16 25 N -0.92 -53.32 13.29 21.45 0.28 -53.03 16 26 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 27 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 28 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 29 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 30 C 0.05 1.03 4.95 86.65 0.43 1.46 16 31 O -0.21 -3.89 10.06 -3.74 -0.04 -3.93 16 32 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.12 0.52 8.11 -2.39 -0.02 0.50 16 36 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.20 2.40 8.06 -2.91 -0.02 2.37 16 40 H 0.12 1.80 6.74 -2.39 -0.02 1.78 16 41 H 0.08 0.98 8.12 -2.39 -0.02 0.97 16 42 H 0.08 1.22 7.09 -2.39 -0.02 1.20 16 43 H 0.06 1.00 6.61 -2.39 -0.02 0.99 16 44 H 0.04 0.57 8.14 -2.39 -0.02 0.56 16 45 H 0.08 1.48 7.79 -2.38 -0.02 1.46 16 46 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.05 1.23 7.64 -2.39 -0.02 1.21 16 48 H 0.08 1.76 8.09 -2.39 -0.02 1.74 16 49 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 50 H 0.07 1.85 7.94 -2.39 -0.02 1.83 16 51 H 0.03 1.61 8.14 -2.38 -0.02 1.59 16 52 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 53 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 54 H 0.08 1.67 8.00 -2.39 -0.02 1.65 16 55 H 0.06 1.23 8.02 -2.39 -0.02 1.21 16 Total: -1.00 -68.93 444.46 -0.24 -69.17 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.85 Total: 11.43 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 8.22 Total: -0.43 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -11.30 Total: -122.01 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -0.04 Total: -3.93 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -68.93 -0.24 -69.17 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084630712.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.051 kcal (2) G-P(sol) polarization free energy of solvation -68.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds