Wall clock time and date at job start Tue Mar 31 2020 05:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47422 * 2 1 4 4 C 1.50699 * 109.47052 * 239.99372 * 2 1 3 5 5 H 1.07997 * 120.00432 * 239.99434 * 4 2 1 6 6 C 1.37880 * 119.99626 * 60.00892 * 4 2 1 7 7 N 1.31507 * 119.99997 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99609 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47185 * 269.99432 * 8 6 4 10 10 H 1.48500 * 109.47511 * 29.99517 * 8 6 4 11 11 H 1.48509 * 109.46922 * 149.99566 * 8 6 4 12 12 N 1.46506 * 109.46725 * 119.99993 * 2 1 3 13 13 C 1.46499 * 120.00453 * 60.00151 * 12 2 1 14 14 C 1.34782 * 119.99542 * 239.99840 * 12 2 1 15 15 O 1.21582 * 120.00354 * 359.97438 * 14 12 2 16 16 N 1.34780 * 119.99785 * 180.02562 * 14 12 2 17 17 C 1.39939 * 120.00079 * 175.41148 * 16 14 12 18 18 C 1.38861 * 120.06919 * 214.81350 * 17 16 14 19 19 C 1.38122 * 119.92595 * 179.76688 * 18 17 16 20 20 C 1.38276 * 120.07028 * 0.50828 * 19 18 17 21 21 C 1.50705 * 119.92840 * 179.76787 * 20 19 18 22 22 C 1.53005 * 109.46893 * 269.97843 * 21 20 19 23 23 N 1.46902 * 109.47105 * 180.02562 * 22 21 20 24 24 C 1.46848 * 110.99505 * 294.20660 * 23 22 21 25 25 C 1.53038 * 109.52340 * 174.16266 * 24 23 22 26 26 C 1.53119 * 109.27544 * 59.17565 * 25 24 23 27 27 C 1.53111 * 109.16404 * 302.34692 * 26 25 24 28 28 C 1.46843 * 110.99948 * 170.00021 * 23 22 21 29 29 C 1.38281 * 120.14265 * 359.74088 * 20 19 18 30 30 C 1.38108 * 120.06670 * 0.02562 * 29 20 19 31 31 H 1.09005 * 109.47033 * 300.00275 * 1 2 3 32 32 H 1.08997 * 109.46867 * 60.00378 * 1 2 3 33 33 H 1.09005 * 109.47273 * 179.97438 * 1 2 3 34 34 H 0.97003 * 119.99965 * 180.02562 * 7 6 4 35 35 H 1.08993 * 109.47124 * 89.99447 * 13 12 2 36 36 H 1.08994 * 109.46855 * 210.00033 * 13 12 2 37 37 H 1.09003 * 109.46744 * 329.99853 * 13 12 2 38 38 H 0.96995 * 120.00102 * 355.40992 * 16 14 12 39 39 H 1.07992 * 120.03592 * 359.97438 * 18 17 16 40 40 H 1.08004 * 119.96201 * 180.25120 * 19 18 17 41 41 H 1.08995 * 109.47153 * 29.97109 * 21 20 19 42 42 H 1.08992 * 109.47207 * 149.98104 * 21 20 19 43 43 H 1.09004 * 109.46808 * 299.99796 * 22 21 20 44 44 H 1.08994 * 109.47294 * 59.99686 * 22 21 20 45 45 H 1.09002 * 109.46513 * 294.17664 * 24 23 22 46 46 H 1.08998 * 109.46738 * 54.14570 * 24 23 22 47 47 H 1.09009 * 109.49991 * 299.24064 * 25 24 23 48 48 H 1.08990 * 109.50569 * 179.12169 * 25 24 23 49 49 H 1.09004 * 109.52007 * 182.44471 * 26 25 24 50 50 H 1.08996 * 109.52604 * 62.26021 * 26 25 24 51 51 H 1.08999 * 109.50714 * 297.71167 * 27 26 25 52 52 H 1.09000 * 109.50726 * 177.60043 * 27 26 25 53 53 H 1.09005 * 109.46295 * 305.84960 * 28 23 22 54 54 H 1.08997 * 109.46661 * 65.81979 * 28 23 22 55 55 H 1.07998 * 119.96379 * 179.97438 * 29 20 19 56 56 H 1.08005 * 120.03578 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9430 0.8296 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 3.6306 -0.5443 -4.4118 10 1 2.4880 -2.5656 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6907 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0873 1.1283 1.8908 16 7 3.2428 -0.6711 3.1837 17 6 4.1246 -0.0222 4.0552 18 6 5.1167 -0.7438 4.7059 19 6 5.9885 -0.0995 5.5617 20 6 5.8676 1.2607 5.7790 21 6 6.8173 1.9595 6.7176 22 6 6.2400 1.9410 8.1344 23 7 7.1655 2.6227 9.0492 24 6 8.4270 1.8810 9.1706 25 6 9.4170 2.6899 10.0118 26 6 8.8156 2.9413 11.3973 27 6 7.4794 3.6721 11.2402 28 6 6.5456 2.8346 10.3634 29 6 4.8775 1.9812 5.1366 30 6 4.0057 1.3437 4.2759 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 0.7084 1.1608 -3.4844 35 1 2.4156 -2.7377 0.9718 36 1 1.6237 -2.2851 2.5003 37 1 0.6904 -2.3002 0.9847 38 1 2.9551 -1.5781 3.3714 39 1 5.2085 -1.8070 4.5403 40 1 6.7629 -0.6595 6.0650 41 1 7.7788 1.4461 6.7104 42 1 6.9539 2.9914 6.3945 43 1 5.2785 2.4544 8.1417 44 1 6.1034 0.9091 8.4576 45 1 8.2395 0.9217 9.6531 46 1 8.8462 1.7125 8.1787 47 1 9.6157 3.6437 9.5228 48 1 10.3478 2.1322 10.1148 49 1 9.4990 3.5541 11.9853 50 1 8.6530 1.9891 11.9021 51 1 7.6476 4.6412 10.7707 52 1 7.0258 3.8162 12.2208 53 1 5.5982 3.3589 10.2378 54 1 6.3668 1.8710 10.8404 55 1 4.7855 3.0434 5.3088 56 1 3.2323 1.9069 3.7747 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086283763.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:13 Heat of formation + Delta-G solvation = -19.851360 kcal Electronic energy + Delta-G solvation = -31547.984405 eV Core-core repulsion = 27455.883760 eV Total energy + Delta-G solvation = -4092.100646 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 359.231 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.70730 -40.26273 -39.59969 -37.39874 -36.28178 -35.17173 -34.54337 -32.43066 -31.83069 -31.69449 -31.01056 -28.47971 -27.64196 -27.27291 -25.49380 -24.17018 -23.84819 -23.53168 -22.65373 -21.52220 -20.74507 -20.56814 -19.33377 -18.57177 -18.00943 -17.33003 -17.01077 -16.70146 -16.27545 -16.23502 -16.00855 -15.56735 -15.32131 -15.22270 -15.00728 -14.73708 -14.52787 -14.45461 -14.36799 -14.19869 -13.95699 -13.86330 -13.66308 -13.48089 -13.13285 -13.04581 -12.94087 -12.73714 -12.68864 -12.62205 -12.37629 -12.19537 -12.16645 -12.09636 -12.06495 -11.82010 -11.55770 -11.31124 -11.23340 -11.17853 -11.07377 -10.87126 -10.52382 -9.80980 -9.46174 -9.24017 -8.84124 -8.14464 -6.30950 0.37312 0.52514 1.41238 1.42686 1.52336 1.73681 2.16684 2.41770 2.83541 3.02346 3.06843 3.13669 3.88361 3.91580 3.98950 4.03417 4.09263 4.16770 4.22202 4.29040 4.30000 4.42034 4.51970 4.54358 4.57292 4.60035 4.62929 4.66660 4.72247 4.73715 4.79452 4.85523 4.88237 4.96146 4.98590 5.03803 5.05169 5.09636 5.10589 5.14791 5.21978 5.26336 5.31621 5.33684 5.42477 5.47158 5.50903 5.59115 5.63358 5.68755 5.76657 5.98302 6.14432 6.15932 6.17437 6.22882 6.25395 6.76328 7.07348 7.36311 7.62123 8.89857 Molecular weight = 359.23amu Principal moments of inertia in cm(-1) A = 0.025385 B = 0.001515 C = 0.001507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.765381 B =18472.197048 C =18575.752785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.277 3.723 3 H 0.010 0.990 4 C -0.538 4.538 5 H 0.060 0.940 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.965 3.035 9 H -0.284 1.284 10 H -0.261 1.261 11 H -0.279 1.279 12 N -0.612 5.612 13 C 0.083 3.917 14 C 0.690 3.310 15 O -0.627 6.627 16 N -0.677 5.677 17 C 0.146 3.854 18 C -0.144 4.144 19 C -0.093 4.093 20 C -0.102 4.102 21 C -0.063 4.063 22 C 0.068 3.932 23 N -0.548 5.548 24 C 0.050 3.950 25 C -0.117 4.117 26 C -0.121 4.121 27 C -0.115 4.115 28 C 0.054 3.946 29 C -0.102 4.102 30 C -0.145 4.145 31 H 0.019 0.981 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.265 0.735 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.418 0.582 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.037 0.963 45 H 0.032 0.968 46 H 0.080 0.920 47 H 0.063 0.937 48 H 0.076 0.924 49 H 0.070 0.930 50 H 0.059 0.941 51 H 0.063 0.937 52 H 0.075 0.925 53 H 0.072 0.928 54 H 0.031 0.969 55 H 0.129 0.871 56 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.144 -3.660 28.570 31.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.175 3.825 3 H 0.028 0.972 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.791 3.209 9 H -0.210 1.210 10 H -0.185 1.185 11 H -0.205 1.205 12 N -0.346 5.346 13 C -0.059 4.059 14 C 0.392 3.608 15 O -0.508 6.508 16 N -0.328 5.328 17 C 0.051 3.949 18 C -0.165 4.165 19 C -0.111 4.111 20 C -0.103 4.103 21 C -0.100 4.100 22 C -0.060 4.060 23 N -0.273 5.273 24 C -0.078 4.078 25 C -0.154 4.154 26 C -0.159 4.159 27 C -0.153 4.153 28 C -0.074 4.074 29 C -0.121 4.121 30 C -0.166 4.166 31 H 0.038 0.962 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.258 0.742 39 H 0.166 0.834 40 H 0.171 0.829 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.055 0.945 45 H 0.050 0.950 46 H 0.099 0.901 47 H 0.082 0.918 48 H 0.095 0.905 49 H 0.089 0.911 50 H 0.078 0.922 51 H 0.082 0.918 52 H 0.094 0.906 53 H 0.090 0.910 54 H 0.049 0.951 55 H 0.147 0.853 56 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 13.286 -2.324 28.015 31.092 hybrid contribution -0.572 -1.101 -1.016 1.604 sum 12.714 -3.426 26.999 30.038 Atomic orbital electron populations 1.21893 0.96974 1.00251 0.99979 1.18481 0.91508 0.91953 0.80568 0.97246 1.21573 1.31910 1.13096 0.91124 0.92208 1.25725 0.95071 0.95666 1.01971 1.70018 1.37227 1.23877 1.24442 0.85450 0.77719 0.79197 0.78583 1.21026 1.18541 1.20453 1.47469 1.51050 1.13339 1.22720 1.21763 1.02192 0.80520 1.01468 1.16188 0.79547 0.84648 0.80396 1.90833 1.64070 1.17630 1.78297 1.42617 1.48609 1.18963 1.22597 1.17861 0.91973 0.92547 0.92507 1.21105 0.94059 1.01207 1.00093 1.21099 0.98761 0.93766 0.97491 1.19942 0.97221 0.94229 0.98952 1.20461 0.96873 1.00684 0.91991 1.21994 0.95546 0.96880 0.91563 1.61926 1.05037 1.49403 1.10971 1.22206 0.90225 0.94672 1.00697 1.21591 0.97819 1.00642 0.95386 1.21585 0.96808 1.00496 0.96989 1.21577 0.95547 0.98974 0.99209 1.22113 0.97794 0.98815 0.88701 1.21040 0.94855 1.00224 0.95994 1.21272 1.01560 0.94566 0.99193 0.96183 0.91233 0.93122 0.92616 0.92499 0.89480 0.90383 0.74165 0.83366 0.82895 0.89809 0.90797 0.91278 0.94522 0.95005 0.90120 0.91816 0.90539 0.91100 0.92216 0.91808 0.90612 0.90962 0.95067 0.85349 0.87716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.43 8.95 71.98 0.64 -5.78 16 2 C 0.28 14.68 2.64 44.24 0.12 14.80 16 3 H 0.01 0.61 6.90 -2.39 -0.02 0.59 16 4 C -0.54 -29.60 8.37 25.60 0.21 -29.39 16 5 H 0.06 3.20 7.65 -2.91 -0.02 3.17 16 6 C 0.02 0.84 5.30 84.66 0.45 1.29 16 7 N -0.92 -53.24 11.32 21.45 0.24 -53.00 16 8 Si 0.97 43.39 29.54 68.60 2.03 45.42 16 9 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 10 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 12 N -0.61 -26.46 2.75 -844.85 -2.33 -28.78 16 13 C 0.08 2.57 9.48 127.77 1.21 3.78 16 14 C 0.69 30.27 8.13 179.05 1.45 31.72 16 15 O -0.63 -33.55 13.11 -3.97 -0.05 -33.60 16 16 N -0.68 -21.98 5.22 -317.18 -1.65 -23.63 16 17 C 0.15 4.56 6.30 38.15 0.24 4.80 16 18 C -0.14 -3.33 9.97 22.39 0.22 -3.10 16 19 C -0.09 -1.83 9.69 22.25 0.22 -1.62 16 20 C -0.10 -2.20 5.14 -19.84 -0.10 -2.30 16 21 C -0.06 -1.04 5.27 29.85 0.16 -0.88 16 22 C 0.07 1.06 4.94 86.30 0.43 1.49 16 23 N -0.55 -8.19 4.66 -896.36 -4.17 -12.36 16 24 C 0.05 0.62 5.29 86.33 0.46 1.08 16 25 C -0.12 -1.26 6.09 30.65 0.19 -1.07 16 26 C -0.12 -1.20 6.00 30.67 0.18 -1.02 16 27 C -0.12 -1.28 6.09 30.64 0.19 -1.09 16 28 C 0.05 0.71 5.46 86.33 0.47 1.18 16 29 C -0.10 -2.80 9.69 22.25 0.22 -2.59 16 30 C -0.15 -4.99 8.70 22.39 0.19 -4.80 16 31 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.07 3.75 6.07 -2.39 -0.01 3.73 16 33 H 0.05 2.20 6.66 -2.38 -0.02 2.18 16 34 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.09 1.92 6.30 -2.39 -0.02 1.90 16 37 H 0.08 2.43 6.43 -2.39 -0.02 2.41 16 38 H 0.42 10.10 6.52 -92.71 -0.60 9.50 16 39 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 40 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 41 H 0.08 1.17 6.37 -2.39 -0.02 1.16 16 42 H 0.07 1.34 8.08 -2.39 -0.02 1.32 16 43 H 0.07 1.18 7.99 -2.39 -0.02 1.16 16 44 H 0.04 0.56 8.12 -2.39 -0.02 0.54 16 45 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.08 0.96 6.21 -2.39 -0.01 0.95 16 47 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 48 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 51 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 52 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 53 H 0.07 0.97 8.02 -2.38 -0.02 0.95 16 54 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 55 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 56 H 0.10 4.36 6.23 -2.91 -0.02 4.35 16 Total: -1.00 -72.26 430.85 1.47 -70.79 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.26 Total: 28.65 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 7.15 Total: 6.51 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -7.91 Total: -117.78 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.05 Total: -33.60 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -72.26 1.47 -70.79 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086283763.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.939 kcal (2) G-P(sol) polarization free energy of solvation -72.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds