Wall clock time and date at job start Tue Mar 31 2020 05:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46492 * 109.47241 * 2 1 4 4 C 1.46507 * 119.99748 * 269.99865 * 3 2 1 5 5 C 1.50701 * 109.47120 * 270.00081 * 4 3 2 6 6 H 1.07996 * 119.99817 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99901 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00095 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99926 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47173 * 90.00074 * 9 7 5 11 11 H 1.48499 * 109.47206 * 210.00491 * 9 7 5 12 12 H 1.48503 * 109.47088 * 330.00073 * 9 7 5 13 13 C 1.34776 * 120.00566 * 90.00009 * 3 2 1 14 14 O 1.21590 * 120.00220 * 179.97438 * 13 3 2 15 15 N 1.34778 * 119.99794 * 359.97438 * 13 3 2 16 16 C 1.39991 * 120.00165 * 184.59643 * 15 13 3 17 17 C 1.38881 * 120.04836 * 324.88662 * 16 15 13 18 18 C 1.38109 * 119.96068 * 180.02562 * 17 16 15 19 19 C 1.38377 * 120.06658 * 0.02562 * 18 17 16 20 20 Cl 1.73597 * 119.94715 * 180.27920 * 19 18 17 21 21 C 1.38447 * 120.10482 * 0.02562 * 19 18 17 22 22 Br 1.89104 * 119.98238 * 179.97438 * 21 19 18 23 23 C 1.38223 * 120.03936 * 359.97318 * 21 19 18 24 24 H 1.08995 * 109.47003 * 59.99897 * 1 2 3 25 25 H 1.08999 * 109.47272 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47011 * 300.00597 * 1 2 3 27 27 H 1.08996 * 109.46670 * 239.99331 * 2 1 3 28 28 H 1.09003 * 109.46813 * 119.99804 * 2 1 3 29 29 H 1.09003 * 109.46972 * 29.99890 * 4 3 2 30 30 H 1.09002 * 109.47096 * 149.99893 * 4 3 2 31 31 H 0.96998 * 120.00085 * 179.97438 * 8 7 5 32 32 H 0.97002 * 119.99733 * 4.59231 * 15 13 3 33 33 H 1.07996 * 120.02363 * 0.04093 * 17 16 15 34 34 H 1.08000 * 119.96535 * 180.02562 * 18 17 16 35 35 H 1.08000 * 120.03447 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8348 -1.7038 6 1 4.3427 1.2300 -1.0962 7 6 4.1492 2.3894 -2.8781 8 7 3.3492 3.1254 -3.6182 9 14 5.9132 2.0952 -3.4177 10 1 5.9760 0.8740 -4.2602 11 1 6.3924 3.2622 -4.2009 12 1 6.7735 1.9155 -2.2207 13 6 2.2431 2.0166 1.1671 14 8 2.6488 3.1628 1.1671 15 7 2.0180 1.3815 2.3344 16 6 2.1586 2.0707 3.5447 17 6 3.1409 3.0429 3.6813 18 6 3.2784 3.7213 4.8764 19 6 2.4388 3.4330 5.9379 20 17 2.6096 4.2928 7.4363 21 6 1.4593 2.4636 5.8051 22 35 0.3142 2.0718 7.2581 23 6 1.3178 1.7819 4.6110 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.5818 1.6875 -2.0285 30 1 2.0956 3.1410 -1.1385 31 1 3.6753 3.5159 -4.4441 32 1 1.7584 0.4468 2.3358 33 1 3.7968 3.2685 2.8535 34 1 4.0420 4.4777 4.9826 35 1 0.5534 1.0260 4.5073 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088405751.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:06 Heat of formation + Delta-G solvation = -17.847600 kcal Electronic energy + Delta-G solvation = -21344.865460 eV Core-core repulsion = 17835.649293 eV Total energy + Delta-G solvation = -3509.216167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 359.998 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.84875 -40.05210 -37.70067 -37.04321 -35.88884 -34.75310 -33.38679 -31.64994 -31.14165 -30.11907 -28.69073 -25.28539 -24.43469 -24.05218 -23.16521 -20.85866 -19.47111 -18.62938 -18.34600 -17.84865 -16.95701 -16.80725 -16.28842 -15.73242 -15.36207 -15.24191 -14.93407 -14.69795 -14.57210 -14.36643 -13.68622 -13.51704 -13.28063 -13.09490 -13.01180 -12.74488 -12.64486 -12.50498 -12.20009 -12.15846 -12.03672 -11.94189 -11.71980 -11.22406 -11.20755 -10.91160 -10.62040 -9.96821 -9.60437 -9.10910 -8.20349 -6.34871 -0.17823 -0.00757 0.35364 1.02353 1.38342 1.41051 1.50634 1.65655 2.03024 2.38463 2.50790 2.93634 3.09978 3.58439 3.97208 4.01143 4.08365 4.12307 4.37084 4.51484 4.53396 4.58873 4.84516 4.94425 4.97493 5.01301 5.11922 5.18606 5.26217 5.37691 5.57103 5.70569 5.77581 6.02268 6.07395 6.74125 6.99539 7.31857 7.57349 8.86166 Molecular weight = 360.00amu Principal moments of inertia in cm(-1) A = 0.018772 B = 0.002638 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.260888 B =10611.906677 C =11749.820537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 N -0.610 5.610 4 C 0.279 3.721 5 C -0.541 4.541 6 H 0.054 0.946 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.965 3.035 10 H -0.264 1.264 11 H -0.283 1.283 12 H -0.273 1.273 13 C 0.696 3.304 14 O -0.615 6.615 15 N -0.673 5.673 16 C 0.176 3.824 17 C -0.113 4.113 18 C -0.082 4.082 19 C -0.040 4.040 20 Cl -0.046 7.046 21 C -0.073 4.073 22 Br -0.015 7.015 23 C -0.103 4.103 24 H 0.040 0.960 25 H 0.098 0.902 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.027 0.973 30 H 0.000 1.000 31 H 0.267 0.733 32 H 0.423 0.577 33 H 0.130 0.870 34 H 0.157 0.843 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.023 -7.565 22.710 24.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.024 4.024 3 N -0.343 5.343 4 C 0.157 3.843 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.790 3.210 10 H -0.189 1.189 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.398 3.602 14 O -0.495 6.495 15 N -0.324 5.324 16 C 0.079 3.921 17 C -0.134 4.134 18 C -0.102 4.102 19 C -0.070 4.070 20 Cl -0.017 7.017 21 C -0.154 4.154 22 Br 0.070 6.930 23 C -0.125 4.125 24 H 0.059 0.941 25 H 0.117 0.883 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.113 0.887 29 H 0.045 0.955 30 H 0.018 0.982 31 H 0.076 0.924 32 H 0.263 0.737 33 H 0.148 0.852 34 H 0.175 0.825 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -7.198 -6.777 23.087 25.115 hybrid contribution 1.069 0.079 -1.072 1.515 sum -6.129 -6.697 22.015 23.814 Atomic orbital electron populations 1.22178 0.94420 1.03675 1.01792 1.21743 0.95392 0.81253 1.03990 1.47493 1.66967 1.15205 1.04663 1.18665 0.95264 0.91429 0.78922 1.21715 0.97937 1.31938 1.06433 0.92800 1.25802 1.02138 0.94517 0.96485 1.70042 1.37703 1.34184 1.14792 0.85450 0.79281 0.78089 0.78182 1.18939 1.20852 1.19814 1.16059 0.78825 0.84296 0.81046 1.90867 1.53262 1.19050 1.86302 1.42599 1.72814 1.14912 1.02085 1.17628 0.94173 0.94971 0.85335 1.21472 0.97574 0.96734 0.97617 1.21063 0.99034 0.99889 0.90203 1.20765 0.98999 0.97459 0.89783 1.98374 1.97080 1.75520 1.30745 1.21546 0.98341 1.00241 0.95237 1.96745 1.61762 1.93915 1.40558 1.20891 0.99173 1.02264 0.90200 0.94053 0.88330 0.92424 0.90145 0.88743 0.95459 0.98205 0.92442 0.73661 0.85178 0.82540 0.81265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 10.24 71.98 0.74 -2.86 16 2 C 0.10 2.70 5.93 86.38 0.51 3.21 16 3 N -0.61 -24.36 2.46 -844.18 -2.07 -26.44 16 4 C 0.28 14.46 5.16 85.63 0.44 14.90 16 5 C -0.54 -30.22 9.39 25.60 0.24 -29.98 16 6 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 7 C 0.01 0.55 5.46 84.65 0.46 1.01 16 8 N -0.93 -54.99 13.29 21.45 0.28 -54.71 16 9 Si 0.97 44.01 29.54 68.60 2.03 46.03 16 10 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 C 0.70 27.80 8.12 179.05 1.45 29.25 16 14 O -0.62 -30.54 13.36 -4.00 -0.05 -30.59 16 15 N -0.67 -18.94 5.22 -317.16 -1.65 -20.59 16 16 C 0.18 4.79 6.30 38.13 0.24 5.03 16 17 C -0.11 -3.41 8.70 22.39 0.19 -3.21 16 18 C -0.08 -2.05 9.82 22.27 0.22 -1.83 16 19 C -0.04 -0.93 6.32 22.35 0.14 -0.79 16 20 Cl -0.05 -0.96 27.73 -2.72 -0.08 -1.03 16 21 C -0.07 -1.57 6.22 22.32 0.14 -1.44 16 22 Br -0.02 -0.28 32.52 -20.37 -0.66 -0.94 16 23 C -0.10 -2.17 9.70 22.41 0.22 -1.95 16 24 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.08 2.36 8.07 -2.39 -0.02 2.34 16 28 H 0.09 1.87 6.30 -2.39 -0.02 1.86 16 29 H 0.03 1.44 8.07 -2.39 -0.02 1.42 16 30 H 0.00 -0.01 7.42 -2.39 -0.02 -0.03 16 31 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 32 H 0.42 8.49 6.52 -92.71 -0.60 7.89 16 33 H 0.13 4.80 6.22 -2.91 -0.02 4.79 16 34 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 35 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -69.55 336.05 3.32 -66.23 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.53 Total: 10.70 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 5.00 Total: 11.34 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -3.44 Total: -101.73 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.05 Total: -30.59 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.03 kcal Atomic # 35 Polarization: -0.28 SS G_CDS: -0.66 Total: -0.94 kcal Total: -69.55 3.32 -66.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088405751.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.387 kcal (2) G-P(sol) polarization free energy of solvation -69.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds