Wall clock time and date at job start Tue Mar 31 2020 06:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39869 * 125.88583 * 2 1 4 4 C 1.35371 * 107.92908 * 179.70209 * 3 2 1 5 5 C 1.50709 * 126.13804 * 180.26512 * 4 3 2 6 6 N 1.35162 * 107.71902 * 0.42407 * 4 3 2 7 7 C 1.40381 * 126.04868 * 179.83832 * 6 4 3 8 8 C 1.38803 * 120.00251 * 312.04129 * 7 6 4 9 9 C 1.38049 * 120.03102 * 179.97438 * 8 7 6 10 10 C 1.38940 * 120.03700 * 359.97438 * 9 8 7 11 11 N 1.39783 * 119.99701 * 180.02562 * 10 9 8 12 12 C 1.46500 * 120.00069 * 0.02562 * 11 10 9 13 13 C 1.50709 * 109.47000 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99619 * 359.97438 * 13 12 11 15 15 N 1.34771 * 119.99784 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00314 * 359.97438 * 15 13 12 17 17 C 1.46497 * 119.99886 * 180.02562 * 15 13 12 18 18 C 1.50701 * 109.47353 * 89.99777 * 17 15 13 19 19 H 1.07998 * 119.99964 * 359.97438 * 18 17 15 20 20 C 1.37876 * 120.00092 * 180.02562 * 18 17 15 21 21 N 1.31515 * 120.00155 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99897 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47093 * 59.99710 * 22 20 18 24 24 H 1.48504 * 109.46987 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47106 * 299.99358 * 22 20 18 26 26 C 1.38878 * 120.00353 * 0.02562 * 10 9 8 27 27 C 1.38240 * 119.96548 * 359.97438 * 26 10 9 28 28 F 1.35100 * 120.01699 * 180.02562 * 27 26 10 29 29 N 1.30922 * 125.88067 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47096 * 270.01871 * 1 2 3 31 31 H 1.09010 * 109.46544 * 30.01411 * 1 2 3 32 32 H 1.08993 * 109.47192 * 150.01067 * 1 2 3 33 33 H 1.07999 * 126.03604 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.46748 * 265.00369 * 5 4 3 35 35 H 1.09000 * 109.46920 * 25.00966 * 5 4 3 36 36 H 1.09004 * 109.46756 * 145.00710 * 5 4 3 37 37 H 1.07999 * 119.98674 * 359.70576 * 8 7 6 38 38 H 1.08000 * 119.98471 * 179.97438 * 9 8 7 39 39 H 0.97005 * 119.99774 * 180.02562 * 11 10 9 40 40 H 1.08997 * 109.47087 * 299.99576 * 12 11 10 41 41 H 1.08993 * 109.47028 * 60.00075 * 12 11 10 42 42 H 1.08993 * 109.47269 * 90.00102 * 16 15 13 43 43 H 1.08997 * 109.47322 * 210.00266 * 16 15 13 44 44 H 1.09008 * 109.46897 * 329.99993 * 16 15 13 45 45 H 1.08996 * 109.47209 * 209.99980 * 17 15 13 46 46 H 1.08999 * 109.47342 * 329.99735 * 17 15 13 47 47 H 0.96996 * 119.99845 * 180.02562 * 21 20 18 48 48 H 1.07999 * 120.01192 * 180.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3269 1.1332 0.0000 4 6 3.6146 0.7159 0.0067 5 6 4.8353 1.5997 0.0148 6 7 3.6091 -0.6357 0.0013 7 6 4.7407 -1.4665 0.0021 8 6 5.7798 -1.2248 -0.8858 9 6 6.8931 -2.0411 -0.8852 10 6 6.9748 -3.1051 0.0046 11 7 8.1027 -3.9308 0.0049 12 6 9.1988 -3.6739 -0.9325 13 6 10.2845 -4.6992 -0.7291 14 8 10.1554 -5.5594 0.1161 15 7 11.3991 -4.6596 -1.4856 16 6 11.5552 -3.6202 -2.5062 17 6 12.4542 -5.6566 -1.2882 18 6 12.1957 -6.8446 -2.1787 19 1 11.3317 -6.8561 -2.8265 20 6 13.0617 -7.9174 -2.1655 21 7 14.1137 -7.9037 -1.3763 22 14 12.7417 -9.3897 -3.2698 23 1 12.7343 -8.9519 -4.6887 24 1 13.8112 -10.4003 -3.0696 25 1 11.4255 -9.9871 -2.9292 26 6 5.9360 -3.3482 0.8937 27 6 4.8211 -2.5309 0.8931 28 9 3.8102 -2.7662 1.7579 29 7 2.2743 -1.0608 0.0005 30 1 -0.3633 0.0003 1.0276 31 1 -0.3633 0.8900 -0.5141 32 1 -0.3633 -0.8900 -0.5136 33 1 1.9917 2.1599 0.0004 34 1 5.1878 1.7416 -1.0068 35 1 4.5810 2.5665 0.4491 36 1 5.6200 1.1300 0.6079 37 1 5.7154 -0.4004 -1.5805 38 1 7.7010 -1.8526 -1.5767 39 1 8.1596 -4.6738 0.6259 40 1 8.8255 -3.7386 -1.9545 41 1 9.6022 -2.6770 -0.7554 42 1 12.0421 -2.7497 -2.0668 43 1 12.1648 -4.0031 -3.3245 44 1 10.5744 -3.3344 -2.8867 45 1 13.4200 -5.2180 -1.5389 46 1 12.4604 -5.9777 -0.2467 47 1 14.7231 -8.6582 -1.3673 48 1 5.9996 -4.1750 1.5857 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088524729.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:40 Heat of formation + Delta-G solvation = 29.828969 kcal Electronic energy + Delta-G solvation = -30843.778941 eV Core-core repulsion = 26429.113286 eV Total energy + Delta-G solvation = -4414.665655 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.170 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.03898 -41.68919 -39.87222 -38.97569 -35.93648 -35.02396 -33.70195 -32.74132 -32.23716 -31.15690 -30.01419 -28.72461 -27.51790 -27.26373 -26.29403 -25.51460 -23.55675 -22.94084 -21.87626 -20.54526 -19.89296 -18.96577 -18.16920 -17.60214 -17.08176 -16.69299 -16.50135 -15.90878 -15.73814 -15.38981 -15.25795 -15.18318 -14.72899 -14.58073 -14.11428 -14.07108 -13.98648 -13.77778 -13.72500 -13.53139 -13.25013 -12.86807 -12.77503 -12.70257 -12.63710 -12.41173 -12.30791 -12.10637 -12.05835 -12.00492 -11.60474 -11.31465 -11.01644 -10.79681 -10.67685 -10.49851 -10.27364 -9.78352 -9.37139 -9.26703 -9.12803 -8.83183 -8.53486 -7.88445 -7.60277 -6.14877 -4.20575 0.77896 0.89166 1.77733 2.22230 2.53634 2.96029 3.07916 3.25309 3.29476 3.30360 3.33603 3.78147 4.00248 4.31369 4.34372 4.35550 4.49396 4.70554 4.76418 4.79944 4.97406 5.06483 5.08674 5.12521 5.16412 5.20077 5.22532 5.32205 5.35220 5.42076 5.47993 5.49802 5.54882 5.63601 5.69273 5.74841 5.83009 5.88533 5.99252 6.04690 6.25052 6.49254 6.76505 6.94164 7.06763 7.25866 7.33399 7.50186 7.54124 7.79915 8.09364 8.15487 8.67503 8.85578 9.44952 10.93182 Molecular weight = 360.17amu Principal moments of inertia in cm(-1) A = 0.021341 B = 0.001703 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.724221 B =16438.937058 C =16889.038791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.070 3.930 3 C -0.271 4.271 4 C 0.088 3.912 5 C -0.094 4.094 6 N -0.311 5.311 7 C 0.036 3.964 8 C -0.038 4.038 9 C -0.197 4.197 10 C 0.263 3.737 11 N -0.718 5.718 12 C 0.100 3.900 13 C 0.498 3.502 14 O -0.537 6.537 15 N -0.595 5.595 16 C 0.078 3.922 17 C 0.245 3.755 18 C -0.532 4.532 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.893 5.893 22 Si 0.899 3.101 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.276 1.276 26 C -0.225 4.225 27 C 0.169 3.831 28 F -0.124 7.124 29 N -0.285 5.285 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.148 0.852 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.417 0.583 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.049 0.951 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.035 0.965 46 H 0.045 0.955 47 H 0.265 0.735 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.948 22.064 0.505 29.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.096 4.096 3 C -0.300 4.300 4 C -0.037 4.037 5 C -0.152 4.152 6 N -0.088 5.088 7 C -0.058 4.058 8 C -0.059 4.059 9 C -0.221 4.221 10 C 0.155 3.845 11 N -0.347 5.347 12 C -0.028 4.028 13 C 0.283 3.717 14 O -0.415 6.415 15 N -0.327 5.327 16 C -0.066 4.066 17 C 0.126 3.874 18 C -0.571 4.571 19 H 0.075 0.925 20 C -0.140 4.140 21 N -0.531 5.531 22 Si 0.727 3.273 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.202 1.202 26 C -0.249 4.249 27 C 0.147 3.853 28 F -0.102 7.102 29 N -0.105 5.105 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.166 0.834 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.155 0.845 38 H 0.157 0.843 39 H 0.256 0.744 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.053 0.947 46 H 0.063 0.937 47 H 0.075 0.925 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -18.535 20.159 0.897 27.399 hybrid contribution -0.207 -0.347 -0.353 0.537 sum -18.742 19.811 0.544 27.277 Atomic orbital electron populations 1.20166 0.86564 1.03245 1.02959 1.22416 0.97030 0.90818 0.99369 1.21099 0.90782 0.99737 1.18333 1.21217 0.97523 0.83894 1.01106 1.20526 0.93266 0.98111 1.03334 1.45376 1.03715 1.03193 1.56472 1.17057 0.88563 0.97315 1.02827 1.20627 0.91546 0.98883 0.94861 1.20551 1.00529 0.97476 1.03538 1.17551 0.86041 0.89173 0.91768 1.44658 1.15943 1.33216 1.40861 1.21284 0.87914 0.99221 0.94423 1.20098 0.83306 0.85681 0.82570 1.90682 1.78356 1.37557 1.34902 1.48129 1.19408 1.30658 1.34475 1.21728 1.01524 0.90819 0.92483 1.19355 0.83914 0.85389 0.98707 1.21356 1.09989 1.02024 1.23687 0.92466 1.24935 0.94930 0.98383 0.95753 1.69913 1.13537 1.31752 1.37946 0.86538 0.78039 0.82053 0.80684 1.20192 1.21086 1.20151 1.20394 0.93961 1.04713 1.05841 1.17124 0.85380 0.94642 0.88159 1.91539 1.58048 1.93714 1.66938 1.77583 0.85529 1.22362 1.25055 0.90531 0.90433 0.90930 0.83380 0.90125 0.89565 0.90628 0.84543 0.84291 0.74372 0.89162 0.89252 0.93246 0.90285 0.92346 0.94670 0.93700 0.92528 0.83797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.45 36.01 0.38 -0.15 16 2 C 0.07 0.79 7.22 -82.37 -0.59 0.20 16 3 C -0.27 -2.67 10.65 -39.99 -0.43 -3.09 16 4 C 0.09 0.90 6.77 -82.14 -0.56 0.34 16 5 C -0.09 -0.59 8.98 36.01 0.32 -0.27 16 6 N -0.31 -3.98 3.57 -6.89 -0.02 -4.00 16 7 C 0.04 0.44 5.99 -83.43 -0.50 -0.06 16 8 C -0.04 -0.36 8.76 -39.44 -0.35 -0.71 16 9 C -0.20 -1.84 9.30 -39.39 -0.37 -2.21 16 10 C 0.26 2.95 6.65 -83.74 -0.56 2.39 16 11 N -0.72 -8.97 5.71 -59.78 -0.34 -9.31 16 12 C 0.10 1.22 3.94 -5.19 -0.02 1.20 16 13 C 0.50 9.11 7.74 -10.98 -0.09 9.02 16 14 O -0.54 -12.19 15.25 5.56 0.08 -12.11 16 15 N -0.59 -11.31 2.86 -182.96 -0.52 -11.83 16 16 C 0.08 1.04 10.24 59.85 0.61 1.66 16 17 C 0.25 6.04 5.16 -5.19 -0.03 6.01 16 18 C -0.53 -14.45 9.39 -34.44 -0.32 -14.77 16 19 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -25.74 13.29 55.43 0.74 -25.01 16 22 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C -0.22 -2.64 9.87 -39.34 -0.39 -3.03 16 27 C 0.17 2.20 7.28 -39.28 -0.29 1.91 16 28 F -0.12 -1.83 16.65 2.25 0.04 -1.79 16 29 N -0.28 -4.04 12.04 33.68 0.41 -3.64 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.08 0.38 7.84 -51.93 -0.41 -0.03 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.49 7.75 -51.93 -0.40 0.09 16 37 H 0.14 0.98 7.26 -52.49 -0.38 0.60 16 38 H 0.14 0.99 6.72 -52.49 -0.35 0.64 16 39 H 0.42 5.80 7.45 -40.82 -0.30 5.50 16 40 H 0.09 0.95 7.21 -51.93 -0.37 0.58 16 41 H 0.09 0.86 7.91 -51.93 -0.41 0.45 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 1.12 8.07 -51.93 -0.42 0.70 16 44 H 0.06 0.58 6.44 -51.92 -0.33 0.25 16 45 H 0.04 0.87 8.07 -51.93 -0.42 0.46 16 46 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 47 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 48 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 409.13 15.07 6.17 6.17 Total: -1.00 -34.96 409.13 -8.43 -43.40 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.69 Total: 1.79 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -3.26 Total: 0.08 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.25 Total: -53.79 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.08 Total: -12.11 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.96 -8.43 -43.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088524729.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.226 kcal (2) G-P(sol) polarization free energy of solvation -34.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds