Wall clock time and date at job start Tue Mar 31 2020 06:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39869 * 125.88583 * 2 1 4 4 C 1.35371 * 107.92908 * 179.70209 * 3 2 1 5 5 C 1.50709 * 126.13804 * 180.26512 * 4 3 2 6 6 N 1.35162 * 107.71902 * 0.42407 * 4 3 2 7 7 C 1.40381 * 126.04868 * 179.83832 * 6 4 3 8 8 C 1.38803 * 120.00251 * 312.04129 * 7 6 4 9 9 C 1.38049 * 120.03102 * 179.97438 * 8 7 6 10 10 C 1.38940 * 120.03700 * 359.97438 * 9 8 7 11 11 N 1.39783 * 119.99701 * 180.02562 * 10 9 8 12 12 C 1.46500 * 120.00069 * 0.02562 * 11 10 9 13 13 C 1.50709 * 109.47000 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99619 * 359.97438 * 13 12 11 15 15 N 1.34771 * 119.99784 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00314 * 359.97438 * 15 13 12 17 17 C 1.46497 * 119.99886 * 180.02562 * 15 13 12 18 18 C 1.50701 * 109.47353 * 89.99777 * 17 15 13 19 19 H 1.07998 * 119.99964 * 359.97438 * 18 17 15 20 20 C 1.37876 * 120.00092 * 180.02562 * 18 17 15 21 21 N 1.31515 * 120.00155 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99897 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47093 * 59.99710 * 22 20 18 24 24 H 1.48504 * 109.46987 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47106 * 299.99358 * 22 20 18 26 26 C 1.38878 * 120.00353 * 0.02562 * 10 9 8 27 27 C 1.38240 * 119.96548 * 359.97438 * 26 10 9 28 28 F 1.35100 * 120.01699 * 180.02562 * 27 26 10 29 29 N 1.30922 * 125.88067 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47096 * 270.01871 * 1 2 3 31 31 H 1.09010 * 109.46544 * 30.01411 * 1 2 3 32 32 H 1.08993 * 109.47192 * 150.01067 * 1 2 3 33 33 H 1.07999 * 126.03604 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.46748 * 265.00369 * 5 4 3 35 35 H 1.09000 * 109.46920 * 25.00966 * 5 4 3 36 36 H 1.09004 * 109.46756 * 145.00710 * 5 4 3 37 37 H 1.07999 * 119.98674 * 359.70576 * 8 7 6 38 38 H 1.08000 * 119.98471 * 179.97438 * 9 8 7 39 39 H 0.97005 * 119.99774 * 180.02562 * 11 10 9 40 40 H 1.08997 * 109.47087 * 299.99576 * 12 11 10 41 41 H 1.08993 * 109.47028 * 60.00075 * 12 11 10 42 42 H 1.08993 * 109.47269 * 90.00102 * 16 15 13 43 43 H 1.08997 * 109.47322 * 210.00266 * 16 15 13 44 44 H 1.09008 * 109.46897 * 329.99993 * 16 15 13 45 45 H 1.08996 * 109.47209 * 209.99980 * 17 15 13 46 46 H 1.08999 * 109.47342 * 329.99735 * 17 15 13 47 47 H 0.96996 * 119.99845 * 180.02562 * 21 20 18 48 48 H 1.07999 * 120.01192 * 180.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3269 1.1332 0.0000 4 6 3.6146 0.7159 0.0067 5 6 4.8353 1.5997 0.0148 6 7 3.6091 -0.6357 0.0013 7 6 4.7407 -1.4665 0.0021 8 6 5.7798 -1.2248 -0.8858 9 6 6.8931 -2.0411 -0.8852 10 6 6.9748 -3.1051 0.0046 11 7 8.1027 -3.9308 0.0049 12 6 9.1988 -3.6739 -0.9325 13 6 10.2845 -4.6992 -0.7291 14 8 10.1554 -5.5594 0.1161 15 7 11.3991 -4.6596 -1.4856 16 6 11.5552 -3.6202 -2.5062 17 6 12.4542 -5.6566 -1.2882 18 6 12.1957 -6.8446 -2.1787 19 1 11.3317 -6.8561 -2.8265 20 6 13.0617 -7.9174 -2.1655 21 7 14.1137 -7.9037 -1.3763 22 14 12.7417 -9.3897 -3.2698 23 1 12.7343 -8.9519 -4.6887 24 1 13.8112 -10.4003 -3.0696 25 1 11.4255 -9.9871 -2.9292 26 6 5.9360 -3.3482 0.8937 27 6 4.8211 -2.5309 0.8931 28 9 3.8102 -2.7662 1.7579 29 7 2.2743 -1.0608 0.0005 30 1 -0.3633 0.0003 1.0276 31 1 -0.3633 0.8900 -0.5141 32 1 -0.3633 -0.8900 -0.5136 33 1 1.9917 2.1599 0.0004 34 1 5.1878 1.7416 -1.0068 35 1 4.5810 2.5665 0.4491 36 1 5.6200 1.1300 0.6079 37 1 5.7154 -0.4004 -1.5805 38 1 7.7010 -1.8526 -1.5767 39 1 8.1596 -4.6738 0.6259 40 1 8.8255 -3.7386 -1.9545 41 1 9.6022 -2.6770 -0.7554 42 1 12.0421 -2.7497 -2.0668 43 1 12.1648 -4.0031 -3.3245 44 1 10.5744 -3.3344 -2.8867 45 1 13.4200 -5.2180 -1.5389 46 1 12.4604 -5.9777 -0.2467 47 1 14.7231 -8.6582 -1.3673 48 1 5.9996 -4.1750 1.5857 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088524729.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:38 Heat of formation + Delta-G solvation = 7.516199 kcal Electronic energy + Delta-G solvation = -30844.746496 eV Core-core repulsion = 26429.113286 eV Total energy + Delta-G solvation = -4415.633210 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.170 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -50.05459 -42.45937 -41.01594 -40.09688 -36.99173 -36.46034 -34.78952 -34.44574 -32.93926 -31.98991 -30.93600 -30.09123 -28.65359 -27.92488 -27.37006 -26.78676 -24.73652 -24.25229 -22.87107 -21.30470 -20.70195 -20.22846 -19.15983 -18.70971 -18.42469 -18.09088 -17.62597 -17.16091 -16.88363 -16.67876 -16.42856 -16.14820 -16.04803 -15.41891 -15.27812 -14.98791 -14.81879 -14.74689 -14.46893 -14.22769 -14.08866 -14.05775 -13.88638 -13.73889 -13.48078 -13.42250 -13.32516 -13.20035 -13.11024 -13.06982 -12.78616 -12.71975 -12.54059 -12.38392 -12.21175 -11.74814 -11.57521 -11.32051 -10.77244 -10.65636 -10.17138 -9.98835 -9.59673 -9.46799 -8.46098 -8.24297 -6.38859 -0.06531 0.08422 1.00206 1.36162 1.39646 1.46593 1.47037 1.70803 1.80049 1.92146 2.35188 2.48122 2.54762 3.05958 3.14304 3.54951 3.57075 3.71217 3.80021 4.02921 4.07631 4.22865 4.23890 4.30072 4.35764 4.50677 4.53254 4.61700 4.72427 4.77882 4.78741 4.80392 4.85678 4.88916 4.97641 5.03604 5.05130 5.06112 5.08404 5.14728 5.21659 5.33047 5.44427 5.52790 5.78066 5.79773 6.03235 6.04314 6.28477 6.46390 6.67162 6.74784 6.75468 7.23867 7.38417 8.82300 Molecular weight = 360.17amu Principal moments of inertia in cm(-1) A = 0.021341 B = 0.001703 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.724221 B =16438.937058 C =16889.038791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.061 3.939 3 C -0.280 4.280 4 C 0.083 3.917 5 C -0.092 4.092 6 N -0.327 5.327 7 C 0.027 3.973 8 C -0.029 4.029 9 C -0.180 4.180 10 C 0.257 3.743 11 N -0.729 5.729 12 C 0.115 3.885 13 C 0.488 3.512 14 O -0.595 6.595 15 N -0.603 5.603 16 C 0.071 3.929 17 C 0.258 3.742 18 C -0.544 4.544 19 H 0.055 0.945 20 C 0.008 3.992 21 N -0.927 5.927 22 Si 0.964 3.036 23 H -0.259 1.259 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.231 4.231 27 C 0.139 3.861 28 F -0.144 7.144 29 N -0.342 5.342 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.066 0.934 33 H 0.176 0.824 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.073 0.927 37 H 0.166 0.834 38 H 0.175 0.825 39 H 0.407 0.593 40 H 0.121 0.879 41 H 0.130 0.870 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.103 0.897 45 H 0.027 0.973 46 H -0.002 1.002 47 H 0.267 0.733 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.546 25.106 -2.095 31.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.105 4.105 3 C -0.308 4.308 4 C -0.041 4.041 5 C -0.150 4.150 6 N -0.104 5.104 7 C -0.067 4.067 8 C -0.049 4.049 9 C -0.203 4.203 10 C 0.150 3.850 11 N -0.357 5.357 12 C -0.011 4.011 13 C 0.276 3.724 14 O -0.476 6.476 15 N -0.334 5.334 16 C -0.071 4.071 17 C 0.137 3.863 18 C -0.583 4.583 19 H 0.073 0.927 20 C -0.191 4.191 21 N -0.567 5.567 22 Si 0.789 3.211 23 H -0.184 1.184 24 H -0.206 1.206 25 H -0.205 1.205 26 C -0.255 4.255 27 C 0.117 3.883 28 F -0.123 7.123 29 N -0.164 5.164 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.193 0.807 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.091 0.909 37 H 0.184 0.816 38 H 0.192 0.808 39 H 0.244 0.756 40 H 0.138 0.862 41 H 0.147 0.853 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.121 0.879 45 H 0.045 0.955 46 H 0.016 0.984 47 H 0.076 0.924 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -19.154 23.271 -1.744 30.191 hybrid contribution -0.056 -1.209 0.493 1.307 sum -19.210 22.062 -1.251 29.280 Atomic orbital electron populations 1.20297 0.84497 1.04235 1.03756 1.23089 0.98549 0.90880 0.97988 1.21520 0.90580 1.00629 1.18119 1.21964 0.99224 0.83311 0.99648 1.20690 0.91481 0.98002 1.04858 1.45536 1.03358 1.04164 1.57357 1.17421 0.89229 0.97077 1.02974 1.20923 0.90413 0.99387 0.94200 1.20914 1.01022 0.95718 1.02608 1.17614 0.85338 0.89777 0.92311 1.44684 1.16536 1.33402 1.41089 1.21337 0.85696 0.98359 0.95754 1.21180 0.83939 0.86123 0.81170 1.90656 1.79529 1.40239 1.37217 1.48105 1.18463 1.30730 1.36084 1.22083 1.04371 0.89771 0.90861 1.18775 0.85609 0.86489 0.95449 1.21688 1.09691 1.03136 1.23749 0.92651 1.25829 0.94753 1.01337 0.97179 1.70034 1.14484 1.32678 1.39456 0.85515 0.77542 0.78498 0.79544 1.18359 1.20558 1.20540 1.20421 0.94183 1.04613 1.06294 1.17440 0.85558 0.96173 0.89135 1.91475 1.59010 1.94026 1.67790 1.77515 0.86805 1.24423 1.27622 0.89731 0.87858 0.91479 0.80654 0.87875 0.87643 0.90860 0.81648 0.80783 0.75629 0.86166 0.85265 0.90387 0.91555 0.87872 0.95490 0.98369 0.92436 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.45 71.24 0.74 -0.22 16 2 C 0.06 1.35 7.22 43.09 0.31 1.66 16 3 C -0.28 -5.02 10.65 22.00 0.23 -4.78 16 4 C 0.08 1.55 6.77 41.39 0.28 1.83 16 5 C -0.09 -0.85 8.98 71.24 0.64 -0.21 16 6 N -0.33 -8.17 3.57 -175.71 -0.63 -8.79 16 7 C 0.03 0.62 5.99 38.10 0.23 0.85 16 8 C -0.03 -0.45 8.76 22.36 0.20 -0.25 16 9 C -0.18 -2.61 9.30 22.39 0.21 -2.40 16 10 C 0.26 5.26 6.65 38.19 0.25 5.52 16 11 N -0.73 -16.98 5.71 -343.04 -1.96 -18.94 16 12 C 0.12 2.40 3.94 85.64 0.34 2.74 16 13 C 0.49 17.40 7.74 87.66 0.68 18.08 16 14 O -0.59 -27.90 15.25 -3.03 -0.05 -27.95 16 15 N -0.60 -22.37 2.86 -851.14 -2.43 -24.80 16 16 C 0.07 1.64 10.24 127.77 1.31 2.95 16 17 C 0.26 13.10 5.16 85.63 0.44 13.54 16 18 C -0.54 -30.02 9.39 25.60 0.24 -29.78 16 19 H 0.06 3.00 7.81 -2.91 -0.02 2.97 16 20 C 0.01 0.46 5.46 84.65 0.46 0.93 16 21 N -0.93 -54.74 13.29 21.45 0.28 -54.46 16 22 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 23 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 26 C -0.23 -5.52 9.87 22.42 0.22 -5.30 16 27 C 0.14 3.71 7.28 22.46 0.16 3.87 16 28 F -0.14 -4.57 16.65 44.97 0.75 -3.82 16 29 N -0.34 -9.89 12.04 -47.34 -0.57 -10.46 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.18 1.96 8.06 -2.91 -0.02 1.93 16 34 H 0.10 0.51 7.84 -2.39 -0.02 0.49 16 35 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.07 0.74 7.75 -2.39 -0.02 0.72 16 37 H 0.17 1.59 7.26 -2.91 -0.02 1.57 16 38 H 0.17 1.30 6.72 -2.91 -0.02 1.28 16 39 H 0.41 11.45 7.45 -92.70 -0.69 10.76 16 40 H 0.12 1.85 7.21 -2.39 -0.02 1.83 16 41 H 0.13 1.73 7.91 -2.39 -0.02 1.71 16 42 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.07 1.73 8.07 -2.39 -0.02 1.71 16 44 H 0.10 1.47 6.44 -2.38 -0.02 1.45 16 45 H 0.03 1.39 8.07 -2.39 -0.02 1.37 16 46 H 0.00 -0.11 7.42 -2.39 -0.02 -0.13 16 47 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 48 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -83.34 409.13 4.68 -78.65 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.31 Total: 15.72 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 6.95 Total: 9.01 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -5.30 Total: -117.45 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.05 Total: -27.95 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 0.75 Total: -3.82 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -83.34 4.68 -78.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088524729.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.168 kcal (2) G-P(sol) polarization free energy of solvation -83.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds