Wall clock time and date at job start Tue Mar 31 2020 05:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38301 * 119.96903 * 2 1 4 4 C 1.38246 * 120.14799 * 179.97438 * 3 2 1 5 5 C 1.38169 * 120.08852 * 359.72341 * 4 3 2 6 6 C 1.38799 * 119.94334 * 0.57362 * 5 4 3 7 7 N 1.40002 * 120.07661 * 179.70592 * 6 5 4 8 8 C 1.34781 * 119.99930 * 335.19057 * 7 6 5 9 9 O 1.21590 * 119.99529 * 354.34613 * 8 7 6 10 10 N 1.34768 * 119.99914 * 174.61836 * 8 7 6 11 11 C 1.46494 * 120.00514 * 359.72383 * 10 8 7 12 12 C 1.50699 * 109.46875 * 90.00015 * 11 10 8 13 13 H 1.08000 * 120.00430 * 0.02562 * 12 11 10 14 14 C 1.37884 * 120.00221 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00192 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99694 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47379 * 90.00078 * 16 14 12 18 18 H 1.48499 * 109.47171 * 209.99988 * 16 14 12 19 19 H 1.48501 * 109.47355 * 329.99691 * 16 14 12 20 20 C 1.46503 * 119.99899 * 179.72979 * 10 8 7 21 21 C 1.50705 * 109.47121 * 89.99605 * 20 10 8 22 22 C 1.38227 * 119.61720 * 95.00654 * 21 20 10 23 23 C 1.38627 * 119.16341 * 179.97438 * 22 21 20 24 24 C 1.38669 * 118.41728 * 359.97438 * 23 22 21 25 25 C 1.38182 * 119.16657 * 0.02562 * 24 23 22 26 26 N 1.31851 * 119.61770 * 274.72235 * 21 20 10 27 27 C 1.38183 * 119.96961 * 180.02562 * 2 1 3 28 28 Cl 1.73599 * 120.04846 * 359.97438 * 27 2 1 29 29 H 1.08996 * 109.47708 * 269.97637 * 1 2 3 30 30 H 1.09004 * 109.47208 * 29.98046 * 1 2 3 31 31 H 1.09010 * 109.47003 * 149.97753 * 1 2 3 32 32 H 1.07997 * 119.92751 * 359.97347 * 3 2 1 33 33 H 1.07998 * 119.95980 * 180.02562 * 4 3 2 34 34 H 1.08001 * 120.02858 * 180.30216 * 5 4 3 35 35 H 0.96996 * 120.00171 * 155.19784 * 7 6 5 36 36 H 1.09001 * 109.47767 * 210.00130 * 11 10 8 37 37 H 1.09003 * 109.46928 * 330.00360 * 11 10 8 38 38 H 0.97000 * 120.00062 * 180.02562 * 15 14 12 39 39 H 1.08991 * 109.47449 * 209.99897 * 20 10 8 40 40 H 1.08999 * 109.47259 * 330.00042 * 20 10 8 41 41 H 1.07998 * 120.41623 * 359.94925 * 22 21 20 42 42 H 1.07997 * 120.78979 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.41807 * 180.02562 * 24 23 22 44 44 H 1.07999 * 119.61894 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1981 0.0000 4 6 3.5803 1.2024 0.0005 5 6 4.2768 0.0091 0.0068 6 6 3.5872 -1.1955 0.0006 7 7 4.2901 -2.4063 0.0008 8 6 5.5470 -2.4559 -0.4834 9 8 6.0333 -1.4757 -1.0136 10 7 6.2627 -3.5936 -0.3847 11 6 5.6768 -4.7746 0.2542 12 6 4.9687 -5.6075 -0.7831 13 1 4.9567 -5.2892 -1.8151 14 6 4.3361 -6.7759 -0.4147 15 7 3.7187 -7.5030 -1.3200 16 14 4.3562 -7.3261 1.3703 17 1 3.1797 -6.7585 2.0765 18 1 4.3027 -8.8088 1.4319 19 1 5.6024 -6.8484 2.0216 20 6 7.6267 -3.6494 -0.9162 21 6 8.6015 -3.2404 0.1579 22 6 9.2136 -4.2099 0.9300 23 6 10.1091 -3.8232 1.9150 24 6 10.3570 -2.4698 2.0870 25 6 9.7075 -1.5579 1.2771 26 7 8.8650 -1.9623 0.3465 27 6 2.1973 -1.1971 -0.0005 28 17 1.3298 -2.7007 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3633 -0.8899 -0.5142 32 1 1.6562 2.1324 -0.0004 33 1 4.1167 2.1398 0.0010 34 1 5.3567 0.0136 0.0122 35 1 3.8726 -3.2095 0.3492 36 1 6.4661 -5.3660 0.7181 37 1 4.9635 -4.4594 1.0158 38 1 3.2733 -8.3249 -1.0608 39 1 7.8490 -4.6658 -1.2407 40 1 7.7144 -2.9700 -1.7641 41 1 8.9965 -5.2554 0.7682 42 1 10.6024 -4.5586 2.5332 43 1 11.0490 -2.1326 2.8445 44 1 9.8949 -0.5020 1.4050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089688783.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:27 Heat of formation + Delta-G solvation = 38.427210 kcal Electronic energy + Delta-G solvation = -29605.626662 eV Core-core repulsion = 25549.263046 eV Total energy + Delta-G solvation = -4056.363616 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 359.114 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.49942 -39.89619 -38.63196 -36.15496 -35.53519 -34.56969 -32.82107 -32.32908 -32.16447 -31.47152 -29.32917 -28.30668 -26.79441 -26.12377 -23.41395 -22.88467 -22.41305 -22.09508 -21.31558 -19.09618 -17.97381 -17.22826 -16.71435 -16.57191 -16.31250 -15.96938 -15.53994 -15.28025 -15.07799 -14.63543 -14.23303 -14.08684 -13.88496 -13.57697 -13.35281 -13.17762 -13.07094 -12.90582 -12.55729 -12.38580 -12.32042 -12.05786 -11.74948 -11.68187 -11.48905 -11.35235 -11.17156 -11.02999 -10.80792 -10.51369 -10.41509 -10.06458 -9.76981 -9.72400 -9.39324 -9.22867 -8.90899 -8.80263 -8.41239 -8.02237 -7.59063 -6.28551 -4.31824 1.17719 1.36856 1.41202 1.50734 2.42606 3.08945 3.12013 3.17768 3.21784 3.56057 3.93471 4.06359 4.18615 4.46044 4.52292 4.85861 4.88172 4.93025 5.00405 5.01676 5.14989 5.25459 5.33534 5.42134 5.56259 5.63317 5.67532 5.70401 5.74101 5.86660 5.89578 6.12680 6.15377 6.23102 6.25806 6.28226 6.39869 6.45417 6.49744 6.67710 6.78772 6.81232 7.06933 7.23696 7.32168 7.48111 8.17851 8.21822 8.44127 8.78841 9.07487 9.29959 10.83644 Molecular weight = 359.11amu Principal moments of inertia in cm(-1) A = 0.007506 B = 0.004687 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3729.594629 B = 5972.802721 C = 8947.499159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.146 4.146 4 C -0.091 4.091 5 C -0.133 4.133 6 C 0.202 3.798 7 N -0.677 5.677 8 C 0.712 3.288 9 O -0.575 6.575 10 N -0.597 5.597 11 C 0.209 3.791 12 C -0.546 4.546 13 H 0.082 0.918 14 C 0.081 3.919 15 N -0.883 5.883 16 Si 0.863 3.137 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.264 1.264 20 C 0.185 3.815 21 C 0.118 3.882 22 C -0.159 4.159 23 C -0.081 4.081 24 C -0.181 4.181 25 C 0.093 3.907 26 N -0.455 5.455 27 C -0.084 4.084 28 Cl -0.058 7.058 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.158 0.842 35 H 0.419 0.581 36 H 0.039 0.961 37 H 0.019 0.981 38 H 0.267 0.733 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.137 0.863 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.600 12.011 7.426 14.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.059 4.059 3 C -0.165 4.165 4 C -0.110 4.110 5 C -0.154 4.154 6 C 0.103 3.897 7 N -0.324 5.324 8 C 0.415 3.585 9 O -0.453 6.453 10 N -0.330 5.330 11 C 0.088 3.912 12 C -0.584 4.584 13 H 0.100 0.900 14 C -0.123 4.123 15 N -0.520 5.520 16 Si 0.690 3.310 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.189 1.189 20 C 0.060 3.940 21 C -0.022 4.022 22 C -0.179 4.179 23 C -0.107 4.107 24 C -0.201 4.201 25 C -0.065 4.065 26 N -0.164 5.164 27 C -0.114 4.114 28 Cl -0.029 7.029 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.175 0.825 35 H 0.259 0.741 36 H 0.056 0.944 37 H 0.037 0.963 38 H 0.077 0.923 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.155 0.845 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.423 12.871 6.476 14.809 hybrid contribution 0.070 -1.844 1.775 2.560 sum 3.493 11.027 8.251 14.208 Atomic orbital electron populations 1.20835 0.90509 1.03290 1.02617 1.19474 0.96263 0.90888 0.99270 1.20828 0.94206 0.96621 1.04875 1.21077 0.93867 0.97834 0.98226 1.21514 1.02387 0.89697 1.01757 1.17386 0.88521 0.86577 0.97249 1.42962 1.14656 1.10643 1.64168 1.15695 0.80228 0.83740 0.78866 1.90836 1.70670 1.34738 1.49043 1.46976 1.12969 1.11588 1.61457 1.19793 0.94238 0.83538 0.93681 1.21370 1.34301 1.06463 0.96278 0.89966 1.24846 0.94450 0.96017 0.97005 1.69878 1.33959 1.14735 1.33436 0.87049 0.79374 0.78811 0.85814 1.19733 1.20644 1.18854 1.20073 0.78164 1.02758 0.92994 1.21944 0.95071 0.88603 0.96559 1.22126 0.97756 1.01405 0.96619 1.21545 0.96363 0.96155 0.96670 1.22105 1.02163 0.94259 1.01558 1.22787 0.92372 1.00057 0.91247 1.67660 1.13141 1.17907 1.17716 1.20569 0.90368 0.87900 1.12578 1.98381 1.76180 1.31264 1.97051 0.90921 0.91284 0.90841 0.85713 0.85588 0.82473 0.74118 0.94355 0.96297 0.92261 0.88182 0.88504 0.84525 0.85138 0.85294 0.83198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 9.61 36.01 0.35 -0.93 16 2 C -0.06 -0.80 5.88 -104.62 -0.62 -1.42 16 3 C -0.15 -1.84 9.70 -39.56 -0.38 -2.22 16 4 C -0.09 -1.24 10.04 -39.60 -0.40 -1.64 16 5 C -0.13 -2.25 8.72 -39.40 -0.34 -2.59 16 6 C 0.20 3.69 6.43 -83.64 -0.54 3.16 16 7 N -0.68 -13.58 5.03 -14.20 -0.07 -13.65 16 8 C 0.71 15.09 8.08 -86.92 -0.70 14.39 16 9 O -0.57 -12.75 13.09 5.29 0.07 -12.68 16 10 N -0.60 -12.16 2.44 -182.19 -0.44 -12.61 16 11 C 0.21 4.51 3.94 -5.20 -0.02 4.49 16 12 C -0.55 -13.91 9.94 -34.44 -0.34 -14.25 16 13 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 14 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 15 N -0.88 -25.07 13.96 55.43 0.77 -24.30 16 16 Si 0.86 19.30 27.47 -169.99 -4.67 14.63 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.26 -5.54 6.54 56.52 0.37 -5.17 16 20 C 0.18 3.32 5.71 -5.19 -0.03 3.29 16 21 C 0.12 1.94 6.36 -82.59 -0.53 1.42 16 22 C -0.16 -2.24 9.72 -39.44 -0.38 -2.62 16 23 C -0.08 -0.96 10.18 -39.28 -0.40 -1.36 16 24 C -0.18 -2.05 10.11 -39.44 -0.40 -2.45 16 25 C 0.09 1.25 11.18 -17.55 -0.20 1.05 16 26 N -0.46 -7.67 10.27 -9.47 -0.10 -7.77 16 27 C -0.08 -1.40 6.33 -39.32 -0.25 -1.65 16 28 Cl -0.06 -0.99 26.12 -51.86 -1.35 -2.34 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 31 H 0.07 0.86 6.90 -51.92 -0.36 0.50 16 32 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 33 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.16 2.92 5.79 -52.49 -0.30 2.62 16 35 H 0.42 8.58 5.57 -40.82 -0.23 8.35 16 36 H 0.04 0.80 7.13 -51.93 -0.37 0.43 16 37 H 0.02 0.41 5.89 -51.93 -0.31 0.11 16 38 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.10 1.66 7.97 -51.93 -0.41 1.24 16 40 H 0.10 1.81 7.42 -51.93 -0.39 1.43 16 41 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 43 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 44 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 384.15 15.07 5.79 5.79 Total: -1.00 -30.81 384.15 -10.62 -41.43 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -5.33 Total: 12.84 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -5.28 Total: -1.33 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: 0.16 Total: -58.33 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.07 Total: -12.68 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.67 Total: 14.63 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.35 Total: -2.34 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.81 -10.62 -41.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089688783.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.853 kcal (2) G-P(sol) polarization free energy of solvation -30.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds