Wall clock time and date at job start Tue Mar 31 2020 05:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38301 * 119.96903 * 2 1 4 4 C 1.38246 * 120.14799 * 179.97438 * 3 2 1 5 5 C 1.38169 * 120.08852 * 359.72341 * 4 3 2 6 6 C 1.38799 * 119.94334 * 0.57362 * 5 4 3 7 7 N 1.40002 * 120.07661 * 179.70592 * 6 5 4 8 8 C 1.34781 * 119.99930 * 335.19057 * 7 6 5 9 9 O 1.21590 * 119.99529 * 354.34613 * 8 7 6 10 10 N 1.34768 * 119.99914 * 174.61836 * 8 7 6 11 11 C 1.46494 * 120.00514 * 359.72383 * 10 8 7 12 12 C 1.50699 * 109.46875 * 90.00015 * 11 10 8 13 13 H 1.08000 * 120.00430 * 0.02562 * 12 11 10 14 14 C 1.37884 * 120.00221 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00192 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99694 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47379 * 90.00078 * 16 14 12 18 18 H 1.48499 * 109.47171 * 209.99988 * 16 14 12 19 19 H 1.48501 * 109.47355 * 329.99691 * 16 14 12 20 20 C 1.46503 * 119.99899 * 179.72979 * 10 8 7 21 21 C 1.50705 * 109.47121 * 89.99605 * 20 10 8 22 22 C 1.38227 * 119.61720 * 95.00654 * 21 20 10 23 23 C 1.38627 * 119.16341 * 179.97438 * 22 21 20 24 24 C 1.38669 * 118.41728 * 359.97438 * 23 22 21 25 25 C 1.38182 * 119.16657 * 0.02562 * 24 23 22 26 26 N 1.31851 * 119.61770 * 274.72235 * 21 20 10 27 27 C 1.38183 * 119.96961 * 180.02562 * 2 1 3 28 28 Cl 1.73599 * 120.04846 * 359.97438 * 27 2 1 29 29 H 1.08996 * 109.47708 * 269.97637 * 1 2 3 30 30 H 1.09004 * 109.47208 * 29.98046 * 1 2 3 31 31 H 1.09010 * 109.47003 * 149.97753 * 1 2 3 32 32 H 1.07997 * 119.92751 * 359.97347 * 3 2 1 33 33 H 1.07998 * 119.95980 * 180.02562 * 4 3 2 34 34 H 1.08001 * 120.02858 * 180.30216 * 5 4 3 35 35 H 0.96996 * 120.00171 * 155.19784 * 7 6 5 36 36 H 1.09001 * 109.47767 * 210.00130 * 11 10 8 37 37 H 1.09003 * 109.46928 * 330.00360 * 11 10 8 38 38 H 0.97000 * 120.00062 * 180.02562 * 15 14 12 39 39 H 1.08991 * 109.47449 * 209.99897 * 20 10 8 40 40 H 1.08999 * 109.47259 * 330.00042 * 20 10 8 41 41 H 1.07998 * 120.41623 * 359.94925 * 22 21 20 42 42 H 1.07997 * 120.78979 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.41807 * 180.02562 * 24 23 22 44 44 H 1.07999 * 119.61894 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1981 0.0000 4 6 3.5803 1.2024 0.0005 5 6 4.2768 0.0091 0.0068 6 6 3.5872 -1.1955 0.0006 7 7 4.2901 -2.4063 0.0008 8 6 5.5470 -2.4559 -0.4834 9 8 6.0333 -1.4757 -1.0136 10 7 6.2627 -3.5936 -0.3847 11 6 5.6768 -4.7746 0.2542 12 6 4.9687 -5.6075 -0.7831 13 1 4.9567 -5.2892 -1.8151 14 6 4.3361 -6.7759 -0.4147 15 7 3.7187 -7.5030 -1.3200 16 14 4.3562 -7.3261 1.3703 17 1 3.1797 -6.7585 2.0765 18 1 4.3027 -8.8088 1.4319 19 1 5.6024 -6.8484 2.0216 20 6 7.6267 -3.6494 -0.9162 21 6 8.6015 -3.2404 0.1579 22 6 9.2136 -4.2099 0.9300 23 6 10.1091 -3.8232 1.9150 24 6 10.3570 -2.4698 2.0870 25 6 9.7075 -1.5579 1.2771 26 7 8.8650 -1.9623 0.3465 27 6 2.1973 -1.1971 -0.0005 28 17 1.3298 -2.7007 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3633 -0.8899 -0.5142 32 1 1.6562 2.1324 -0.0004 33 1 4.1167 2.1398 0.0010 34 1 5.3567 0.0136 0.0122 35 1 3.8726 -3.2095 0.3492 36 1 6.4661 -5.3660 0.7181 37 1 4.9635 -4.4594 1.0158 38 1 3.2733 -8.3249 -1.0608 39 1 7.8490 -4.6658 -1.2407 40 1 7.7144 -2.9700 -1.7641 41 1 8.9965 -5.2554 0.7682 42 1 10.6024 -4.5586 2.5332 43 1 11.0490 -2.1326 2.8445 44 1 9.8949 -0.5020 1.4050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089688783.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:26 Heat of formation + Delta-G solvation = 21.455650 kcal Electronic energy + Delta-G solvation = -29606.362604 eV Core-core repulsion = 25549.263046 eV Total energy + Delta-G solvation = -4057.099558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 359.114 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.93052 -41.00646 -39.93435 -37.46420 -37.07004 -36.06606 -34.68724 -33.47277 -33.25137 -32.70177 -30.60105 -30.06566 -27.85303 -27.48227 -24.78395 -24.27387 -23.74467 -23.28186 -22.53280 -20.58197 -19.45224 -19.16543 -18.14603 -17.79408 -17.47653 -17.09363 -16.80668 -16.56379 -16.44436 -16.21831 -15.70971 -15.36853 -15.07415 -14.93090 -14.66871 -14.38301 -14.32806 -14.23107 -14.00368 -13.77122 -13.43679 -13.29384 -13.21810 -12.84228 -12.77945 -12.62941 -12.58548 -12.48085 -12.31209 -12.11660 -11.80349 -11.75484 -11.43366 -10.96608 -10.83644 -10.76395 -10.34338 -9.97493 -9.60791 -9.59614 -8.95949 -8.33149 -6.41761 0.11609 0.17632 0.31523 0.42528 1.14549 1.34577 1.36081 1.44642 1.66498 2.08036 2.29076 2.73222 2.78406 2.99610 3.06652 3.39748 3.74205 3.82336 3.98784 4.03803 4.16590 4.26565 4.27553 4.29674 4.42554 4.45567 4.52084 4.61539 4.66285 4.73096 4.78660 4.82247 4.85960 4.87895 5.09243 5.21953 5.24532 5.28662 5.34372 5.35853 5.49441 5.54342 5.56447 5.82630 5.90564 5.98779 6.17933 6.63140 6.79992 7.16220 7.23304 7.47615 8.82757 Molecular weight = 359.11amu Principal moments of inertia in cm(-1) A = 0.007506 B = 0.004687 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3729.594629 B = 5972.802721 C = 8947.499159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.057 4.057 3 C -0.130 4.130 4 C -0.083 4.083 5 C -0.150 4.150 6 C 0.167 3.833 7 N -0.681 5.681 8 C 0.705 3.295 9 O -0.593 6.593 10 N -0.600 5.600 11 C 0.221 3.779 12 C -0.541 4.541 13 H 0.032 0.968 14 C 0.028 3.972 15 N -0.934 5.934 16 Si 0.929 3.071 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.235 1.235 20 C 0.185 3.815 21 C 0.093 3.907 22 C -0.166 4.166 23 C -0.077 4.077 24 C -0.164 4.164 25 C 0.078 3.922 26 N -0.495 5.495 27 C -0.099 4.099 28 Cl -0.072 7.072 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.169 0.831 33 H 0.158 0.842 34 H 0.134 0.866 35 H 0.413 0.587 36 H 0.056 0.944 37 H 0.026 0.974 38 H 0.269 0.731 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.144 0.856 42 H 0.167 0.833 43 H 0.170 0.830 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.129 13.833 10.550 17.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.059 4.059 3 C -0.149 4.149 4 C -0.102 4.102 5 C -0.171 4.171 6 C 0.070 3.930 7 N -0.328 5.328 8 C 0.407 3.593 9 O -0.472 6.472 10 N -0.333 5.333 11 C 0.099 3.901 12 C -0.579 4.579 13 H 0.050 0.950 14 C -0.172 4.172 15 N -0.573 5.573 16 Si 0.751 3.249 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.158 1.158 20 C 0.061 3.939 21 C -0.045 4.045 22 C -0.187 4.187 23 C -0.103 4.103 24 C -0.184 4.184 25 C -0.080 4.080 26 N -0.205 5.205 27 C -0.128 4.128 28 Cl -0.043 7.043 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.186 0.814 33 H 0.175 0.825 34 H 0.152 0.848 35 H 0.252 0.748 36 H 0.074 0.926 37 H 0.043 0.957 38 H 0.078 0.922 39 H 0.123 0.877 40 H 0.095 0.905 41 H 0.162 0.838 42 H 0.184 0.816 43 H 0.187 0.813 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.964 14.727 9.599 18.020 hybrid contribution -0.087 -2.236 0.732 2.354 sum 3.877 12.492 10.330 16.667 Atomic orbital electron populations 1.20918 0.88203 1.04157 1.03837 1.19957 0.97987 0.90239 0.97679 1.21314 0.93774 0.97708 1.02078 1.21443 0.94685 0.97652 0.96388 1.21436 1.01508 0.90733 1.03417 1.17713 0.89361 0.86293 0.99656 1.42939 1.14327 1.11231 1.64307 1.15881 0.80663 0.83770 0.78938 1.90807 1.71191 1.35280 1.49936 1.47033 1.13873 1.10945 1.61462 1.19575 0.94414 0.83543 0.92574 1.21414 1.34552 1.07017 0.94963 0.94953 1.25681 0.93800 0.95910 1.01780 1.70036 1.35590 1.15540 1.36127 0.85997 0.80694 0.78218 0.79984 1.19260 1.20551 1.15819 1.20087 0.77833 1.02538 0.93472 1.21589 0.96142 0.89418 0.97351 1.22250 0.98228 1.01213 0.96988 1.21983 0.95212 0.97293 0.95824 1.22526 1.01220 0.93673 1.00987 1.23261 0.92014 1.01731 0.90949 1.67534 1.14933 1.18380 1.19676 1.20793 0.89868 0.88415 1.13774 1.98368 1.76230 1.32517 1.97195 0.89384 0.88468 0.91955 0.81354 0.82455 0.84803 0.74849 0.92595 0.95663 0.92201 0.87710 0.90547 0.83810 0.81567 0.81297 0.81163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.21 9.61 71.24 0.68 -1.53 16 2 C -0.06 -1.49 5.88 -19.86 -0.12 -1.60 16 3 C -0.13 -2.83 9.70 22.29 0.22 -2.61 16 4 C -0.08 -2.10 10.04 22.26 0.22 -1.88 16 5 C -0.15 -5.18 8.72 22.39 0.20 -4.98 16 6 C 0.17 6.33 6.43 38.15 0.25 6.57 16 7 N -0.68 -28.78 5.03 -317.08 -1.59 -30.38 16 8 C 0.71 31.68 8.08 179.06 1.45 33.13 16 9 O -0.59 -28.03 13.09 -4.00 -0.05 -28.09 16 10 N -0.60 -25.72 2.44 -848.58 -2.07 -27.79 16 11 C 0.22 9.73 3.94 85.63 0.34 10.06 16 12 C -0.54 -28.84 9.94 25.60 0.25 -28.59 16 13 H 0.03 2.01 8.06 -2.91 -0.02 1.98 16 14 C 0.03 1.52 5.47 84.66 0.46 1.99 16 15 N -0.93 -55.14 13.96 21.45 0.30 -54.84 16 16 Si 0.93 39.62 27.47 68.60 1.88 41.51 16 17 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 18 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.24 -8.89 6.54 99.48 0.65 -8.24 16 20 C 0.18 7.05 5.71 85.63 0.49 7.54 16 21 C 0.09 3.14 6.36 42.55 0.27 3.41 16 22 C -0.17 -4.49 9.72 22.36 0.22 -4.27 16 23 C -0.08 -1.58 10.18 22.47 0.23 -1.35 16 24 C -0.16 -3.17 10.11 22.36 0.23 -2.95 16 25 C 0.08 1.98 11.18 84.67 0.95 2.93 16 26 N -0.50 -16.96 10.27 -183.88 -1.89 -18.85 16 27 C -0.10 -3.32 6.33 22.44 0.14 -3.18 16 28 Cl -0.07 -2.53 26.12 -2.72 -0.07 -2.60 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.10 1.34 8.09 -2.38 -0.02 1.32 16 31 H 0.06 1.37 6.90 -2.38 -0.02 1.35 16 32 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 33 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 34 H 0.13 5.24 5.79 -2.91 -0.02 5.23 16 35 H 0.41 17.79 5.57 -92.71 -0.52 17.28 16 36 H 0.06 2.28 7.13 -2.39 -0.02 2.26 16 37 H 0.03 1.10 5.89 -2.39 -0.01 1.09 16 38 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 39 H 0.10 3.72 7.97 -2.39 -0.02 3.70 16 40 H 0.08 3.14 7.42 -2.39 -0.02 3.13 16 41 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 42 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 43 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 44 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -72.81 384.15 3.45 -69.36 By element: Atomic # 1 Polarization: 38.51 SS G_CDS: 0.47 Total: 38.98 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 6.47 Total: 12.69 kcal Atomic # 7 Polarization: -126.60 SS G_CDS: -5.25 Total: -131.86 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.05 Total: -28.09 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 1.88 Total: 41.51 kcal Atomic # 17 Polarization: -2.53 SS G_CDS: -0.07 Total: -2.60 kcal Total: -72.81 3.45 -69.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089688783.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.812 kcal (2) G-P(sol) polarization free energy of solvation -72.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds