Wall clock time and date at job start Tue Mar 31 2020 06:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.21275 * 120.00033 * 2 1 4 4 N 1.34782 * 119.99513 * 180.02562 * 2 1 3 5 5 C 1.46493 * 120.00077 * 4.21843 * 4 2 1 6 6 C 1.50702 * 109.47029 * 84.20556 * 5 4 2 7 7 N 1.30255 * 125.61504 * 89.69743 * 6 5 4 8 8 C 1.34479 * 108.69803 * 179.83921 * 7 6 5 9 9 C 1.34325 * 107.67098 * 0.42054 * 8 7 6 10 10 C 1.50699 * 126.44886 * 179.72980 * 9 8 7 11 11 O 1.33965 * 125.62339 * 269.99909 * 6 5 4 12 12 C 1.46493 * 119.99767 * 184.22730 * 4 2 1 13 13 H 1.09000 * 110.27636 * 182.99506 * 12 4 2 14 14 C 1.54597 * 110.31260 * 60.90206 * 12 4 2 15 15 C 1.55110 * 102.84459 * 219.18857 * 14 12 4 16 16 N 1.48530 * 103.28474 * 37.30575 * 15 14 12 17 17 C 1.46896 * 110.99977 * 200.33186 * 16 15 14 18 18 C 1.53002 * 109.47492 * 287.39778 * 17 16 15 19 19 H 1.09004 * 109.46610 * 54.99934 * 18 17 16 20 20 C 1.47200 * 109.46999 * 295.00164 * 18 17 16 21 21 N 5.75461 * 128.19321 * 348.35296 * 2 1 3 22 22 C 1.52995 * 109.47632 * 174.99760 * 18 17 16 23 23 C 1.50696 * 109.47471 * 184.99942 * 22 18 17 24 24 H 1.08003 * 119.99478 * 0.02562 * 23 22 18 25 25 C 1.37874 * 120.00134 * 180.02562 * 23 22 18 26 26 N 1.31514 * 120.00171 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00111 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.47531 * 59.99447 * 27 25 23 29 29 H 1.48493 * 109.47660 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.46888 * 299.99827 * 27 25 23 31 31 C 1.47902 * 105.82336 * 320.84530 * 16 15 14 32 32 H 1.08997 * 109.47123 * 175.13281 * 1 2 3 33 33 H 1.09003 * 109.46546 * 55.12856 * 1 2 3 34 34 H 1.08997 * 109.46798 * 295.13676 * 1 2 3 35 35 H 1.09004 * 109.47349 * 204.20416 * 5 4 2 36 36 H 1.09003 * 109.47720 * 324.20915 * 5 4 2 37 37 H 1.08005 * 126.16197 * 180.16229 * 8 7 6 38 38 H 1.08998 * 109.47077 * 270.02013 * 10 9 8 39 39 H 1.09005 * 109.46971 * 30.01742 * 10 9 8 40 40 H 1.09002 * 109.47358 * 150.01578 * 10 9 8 41 41 H 1.08997 * 110.72487 * 337.48481 * 14 12 4 42 42 H 1.08996 * 110.72047 * 100.77169 * 14 12 4 43 43 H 1.08998 * 110.59099 * 278.87186 * 15 14 12 44 44 H 1.08999 * 110.82390 * 155.85093 * 15 14 12 45 45 H 1.09003 * 109.47156 * 47.39538 * 17 16 15 46 46 H 1.08997 * 109.47650 * 167.39419 * 17 16 15 47 47 H 1.09005 * 109.47014 * 305.00438 * 22 18 17 48 48 H 1.09000 * 109.47124 * 64.99903 * 22 18 17 49 49 H 0.97001 * 120.00142 * 180.02562 * 26 25 23 50 50 H 1.08998 * 109.91908 * 265.97941 * 31 16 15 51 51 H 1.08995 * 110.08366 * 144.77231 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.4513 -2.4342 -0.0944 6 6 1.1672 -2.7441 -1.5416 7 7 1.9446 -3.4189 -2.3396 8 6 1.3602 -3.4949 -3.5484 9 6 0.1926 -2.8343 -3.4790 10 6 -0.8001 -2.6510 -4.5979 11 8 0.0761 -2.3662 -2.2208 12 6 3.6428 -1.1691 0.0930 13 1 4.0244 -2.1880 0.0257 14 6 4.0968 -0.5125 1.4169 15 6 5.3466 0.2998 0.9882 16 7 4.9781 0.8080 -0.3580 17 6 6.1737 1.1851 -1.1237 18 6 6.7581 2.4787 -0.5528 19 1 6.9467 2.3526 0.5134 20 6 5.8026 3.5800 -0.7552 21 7 5.0653 4.4296 -0.9131 22 6 8.0708 2.8045 -1.2678 23 6 8.7082 4.0087 -0.6239 24 1 8.2254 4.4929 0.2121 25 6 9.9076 4.4922 -1.1020 26 7 10.4958 3.9023 -2.1197 27 14 10.6981 5.9845 -0.3034 28 1 10.9730 5.6933 1.1266 29 1 11.9721 6.3008 -0.9974 30 1 9.7776 7.1454 -0.4039 31 6 4.2507 -0.2962 -1.0206 32 1 -0.3633 -1.0239 -0.0872 33 1 -0.3632 0.5876 -0.8432 34 1 -0.3633 0.4365 0.9303 35 1 2.0541 -3.2335 0.3368 36 1 0.5111 -2.3534 0.4512 37 1 1.7598 -3.9932 -4.4193 38 1 -0.5648 -1.7391 -5.1466 39 1 -0.7482 -3.5050 -5.2733 40 1 -1.8054 -2.5764 -4.1831 41 1 3.3219 0.1486 1.8051 42 1 4.3619 -1.2716 2.1528 43 1 6.2222 -0.3466 0.9290 44 1 5.5261 1.1265 1.6756 45 1 6.9156 0.3895 -1.0542 46 1 5.9027 1.3388 -2.1682 47 1 8.7464 1.9523 -1.1933 48 1 7.8695 3.0178 -2.3176 49 1 11.3398 4.2422 -2.4558 50 1 4.9414 -0.8882 -1.6212 51 1 3.4582 0.1040 -1.6529 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089702317.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:12 Heat of formation + Delta-G solvation = 30.380103 kcal Electronic energy + Delta-G solvation = -32693.941057 eV Core-core repulsion = 28402.759605 eV Total energy + Delta-G solvation = -4291.181451 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.195 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.71799 -40.59261 -38.29451 -36.35911 -35.70457 -35.05203 -33.71969 -32.96665 -32.31262 -30.67699 -29.74773 -29.23706 -27.75202 -26.24372 -25.60665 -23.43639 -22.84106 -21.91540 -21.64908 -21.36676 -20.86520 -19.04556 -17.67518 -17.45257 -16.94864 -16.53125 -16.38790 -16.29903 -15.70830 -15.30274 -14.95894 -14.78245 -14.51319 -14.42414 -13.88004 -13.77414 -13.64538 -13.53728 -13.24818 -13.02200 -12.96976 -12.85358 -12.70175 -12.43321 -12.33830 -12.11364 -11.92294 -11.78954 -11.69639 -11.65998 -11.50545 -11.17168 -11.02421 -10.95693 -10.89755 -10.84415 -10.55427 -10.46392 -10.06427 -9.70343 -9.44076 -9.23088 -9.13287 -8.97710 -8.38874 -8.02564 -6.03014 -4.05573 0.96619 2.07832 2.22647 2.57408 2.80829 3.35904 3.39558 3.44083 3.58228 3.92451 4.03741 4.17470 4.21615 4.35148 4.45972 4.47593 4.57072 4.63725 4.70817 4.75635 4.87865 4.92442 4.96679 5.03211 5.09621 5.11555 5.19348 5.27739 5.34993 5.40408 5.43366 5.52917 5.62569 5.63286 5.70109 5.77557 5.80423 5.87237 5.90882 6.08925 6.11117 6.20392 6.42057 6.50873 6.61102 7.02927 7.20224 7.33467 7.33853 7.50559 7.62244 7.92745 8.04559 8.31424 8.78488 8.99279 9.59244 11.07983 Molecular weight = 360.19amu Principal moments of inertia in cm(-1) A = 0.015742 B = 0.002135 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.247547 B =13110.971942 C =13534.845822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.501 3.499 3 O -0.485 6.485 4 N -0.609 5.609 5 C 0.209 3.791 6 C 0.161 3.839 7 N -0.463 5.463 8 C -0.044 4.044 9 C -0.042 4.042 10 C -0.070 4.070 11 O -0.198 6.198 12 C 0.140 3.860 13 H 0.098 0.902 14 C -0.128 4.128 15 C 0.037 3.963 16 N -0.499 5.499 17 C 0.054 3.946 18 C 0.016 3.984 19 H 0.098 0.902 20 C 0.257 3.743 21 N -0.479 5.479 22 C 0.032 3.968 23 C -0.523 4.523 24 H 0.056 0.944 25 C 0.062 3.938 26 N -0.893 5.893 27 Si 0.892 3.108 28 H -0.275 1.275 29 H -0.287 1.287 30 H -0.277 1.277 31 C 0.042 3.958 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.110 0.890 37 H 0.183 0.817 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.048 0.952 44 H 0.085 0.915 45 H 0.053 0.947 46 H 0.075 0.925 47 H 0.036 0.964 48 H 0.025 0.975 49 H 0.262 0.738 50 H 0.045 0.955 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.601 -23.037 2.024 33.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.289 3.711 3 O -0.356 6.356 4 N -0.345 5.345 5 C 0.084 3.916 6 C -0.048 4.048 7 N -0.192 5.192 8 C -0.183 4.183 9 C -0.095 4.095 10 C -0.127 4.127 11 O -0.084 6.084 12 C 0.037 3.963 13 H 0.116 0.884 14 C -0.167 4.167 15 C -0.091 4.091 16 N -0.223 5.223 17 C -0.076 4.076 18 C -0.006 4.006 19 H 0.115 0.885 20 C -0.060 4.060 21 N -0.156 5.156 22 C -0.007 4.007 23 C -0.562 4.562 24 H 0.074 0.926 25 C -0.140 4.140 26 N -0.532 5.532 27 Si 0.719 3.281 28 H -0.201 1.201 29 H -0.212 1.212 30 H -0.202 1.202 31 C -0.087 4.087 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.143 0.857 36 H 0.128 0.872 37 H 0.201 0.799 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.103 0.897 45 H 0.072 0.928 46 H 0.093 0.907 47 H 0.054 0.946 48 H 0.043 0.957 49 H 0.072 0.928 50 H 0.063 0.937 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -24.004 -20.872 1.915 31.867 hybrid contribution 0.715 -0.085 -0.187 0.744 sum -23.289 -20.956 1.728 31.377 Atomic orbital electron populations 1.22033 0.92276 1.04108 1.05329 1.20884 0.90407 0.83435 0.76406 1.90958 1.69731 1.29890 1.44997 1.48224 1.06742 1.05033 1.74508 1.19909 0.99677 0.88380 0.83659 1.26920 0.82419 0.97390 0.98051 1.70405 1.29696 1.17355 1.01771 1.23108 0.93524 1.04669 0.96965 1.23547 1.00220 1.00961 0.84787 1.20307 0.96133 1.04089 0.92161 1.84383 1.41813 1.60863 1.21375 1.22045 0.78332 0.99999 0.95971 0.88433 1.22862 0.98801 0.99155 0.95886 1.23238 0.95556 0.98083 0.92187 1.64771 1.21225 1.34366 1.01973 1.22418 0.90628 0.96390 0.98127 1.19131 0.92592 0.86214 1.02694 0.88463 1.28783 0.91849 0.93320 0.92077 1.80953 1.12541 1.12117 1.09981 1.19165 0.87979 0.97703 0.95851 1.21117 1.05777 1.12901 1.16364 0.92556 1.24952 0.97108 0.97019 0.94939 1.69934 1.17692 1.40701 1.24872 0.86654 0.78535 0.83345 0.79540 1.20074 1.21243 1.20228 1.22976 0.98139 0.91580 0.95960 0.90683 0.88912 0.88629 0.85749 0.87165 0.79949 0.89578 0.88865 0.90264 0.89898 0.90941 0.93383 0.89650 0.92842 0.90657 0.94570 0.95687 0.92821 0.93685 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 9.99 36.01 0.36 -1.01 16 2 C 0.50 5.76 6.56 -10.98 -0.07 5.69 16 3 O -0.48 -8.09 13.94 5.56 0.08 -8.01 16 4 N -0.61 -5.63 2.46 -165.92 -0.41 -6.04 16 5 C 0.21 1.27 5.65 -5.20 -0.03 1.24 16 6 C 0.16 1.41 7.74 -12.95 -0.10 1.31 16 7 N -0.46 -4.78 11.29 -11.10 -0.13 -4.91 16 8 C -0.04 -0.38 11.80 -17.77 -0.21 -0.59 16 9 C -0.04 -0.33 7.39 -35.69 -0.26 -0.59 16 10 C -0.07 -0.28 10.43 36.01 0.38 0.09 16 11 O -0.20 -1.75 10.21 5.37 0.05 -1.69 16 12 C 0.14 1.45 3.45 -66.57 -0.23 1.23 16 13 H 0.10 0.83 7.79 -51.93 -0.40 0.42 16 14 C -0.13 -1.38 6.32 -24.78 -0.16 -1.53 16 15 C 0.04 0.49 5.91 -1.81 -0.01 0.48 16 16 N -0.50 -7.91 4.51 -230.34 -1.04 -8.95 16 17 C 0.05 0.91 4.07 -3.83 -0.02 0.89 16 18 C 0.02 0.32 2.24 -93.41 -0.21 0.11 16 19 H 0.10 1.87 7.17 -51.93 -0.37 1.49 16 20 C 0.26 6.00 13.67 -20.76 -0.28 5.72 16 21 N -0.48 -12.13 18.54 42.15 0.78 -11.35 16 22 C 0.03 0.77 4.42 -27.89 -0.12 0.65 16 23 C -0.52 -14.53 8.60 -34.44 -0.30 -14.83 16 24 H 0.06 1.56 7.59 -52.48 -0.40 1.16 16 25 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 26 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 27 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 28 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 31 C 0.04 0.59 5.41 -2.75 -0.01 0.57 16 32 H 0.07 0.41 4.84 -51.93 -0.25 0.15 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.12 0.51 7.85 -51.93 -0.41 0.11 16 36 H 0.11 0.37 6.17 -51.93 -0.32 0.05 16 37 H 0.18 1.14 8.06 -52.48 -0.42 0.71 16 38 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.08 1.05 6.62 -51.93 -0.34 0.71 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.57 7.81 -51.93 -0.41 0.16 16 44 H 0.09 1.19 7.67 -51.93 -0.40 0.80 16 45 H 0.05 0.82 7.83 -51.93 -0.41 0.41 16 46 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 47 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 50 H 0.04 0.59 7.77 -51.93 -0.40 0.19 16 51 H 0.08 1.26 6.79 -51.93 -0.35 0.91 16 LS Contribution 419.72 15.07 6.33 6.33 Total: -1.00 -37.44 419.72 -7.82 -45.26 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -7.82 Total: -3.11 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -1.38 Total: 1.07 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.06 Total: -56.80 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.13 Total: -9.70 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -37.44 -7.82 -45.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089702317.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.642 kcal (2) G-P(sol) polarization free energy of solvation -37.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds