Wall clock time and date at job start Tue Mar 31 2020 06:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.21275 * 120.00033 * 2 1 4 4 N 1.34782 * 119.99513 * 180.02562 * 2 1 3 5 5 C 1.46493 * 120.00077 * 4.21843 * 4 2 1 6 6 C 1.50702 * 109.47029 * 84.20556 * 5 4 2 7 7 N 1.30255 * 125.61504 * 89.69743 * 6 5 4 8 8 C 1.34479 * 108.69803 * 179.83921 * 7 6 5 9 9 C 1.34325 * 107.67098 * 0.42054 * 8 7 6 10 10 C 1.50699 * 126.44886 * 179.72980 * 9 8 7 11 11 O 1.33965 * 125.62339 * 269.99909 * 6 5 4 12 12 C 1.46493 * 119.99767 * 184.22730 * 4 2 1 13 13 H 1.09000 * 110.27636 * 182.99506 * 12 4 2 14 14 C 1.54597 * 110.31260 * 60.90206 * 12 4 2 15 15 C 1.55110 * 102.84459 * 219.18857 * 14 12 4 16 16 N 1.48530 * 103.28474 * 37.30575 * 15 14 12 17 17 C 1.46896 * 110.99977 * 200.33186 * 16 15 14 18 18 C 1.53002 * 109.47492 * 287.39778 * 17 16 15 19 19 H 1.09004 * 109.46610 * 54.99934 * 18 17 16 20 20 C 1.47200 * 109.46999 * 295.00164 * 18 17 16 21 21 N 5.75461 * 128.19321 * 348.35296 * 2 1 3 22 22 C 1.52995 * 109.47632 * 174.99760 * 18 17 16 23 23 C 1.50696 * 109.47471 * 184.99942 * 22 18 17 24 24 H 1.08003 * 119.99478 * 0.02562 * 23 22 18 25 25 C 1.37874 * 120.00134 * 180.02562 * 23 22 18 26 26 N 1.31514 * 120.00171 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00111 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.47531 * 59.99447 * 27 25 23 29 29 H 1.48493 * 109.47660 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.46888 * 299.99827 * 27 25 23 31 31 C 1.47902 * 105.82336 * 320.84530 * 16 15 14 32 32 H 1.08997 * 109.47123 * 175.13281 * 1 2 3 33 33 H 1.09003 * 109.46546 * 55.12856 * 1 2 3 34 34 H 1.08997 * 109.46798 * 295.13676 * 1 2 3 35 35 H 1.09004 * 109.47349 * 204.20416 * 5 4 2 36 36 H 1.09003 * 109.47720 * 324.20915 * 5 4 2 37 37 H 1.08005 * 126.16197 * 180.16229 * 8 7 6 38 38 H 1.08998 * 109.47077 * 270.02013 * 10 9 8 39 39 H 1.09005 * 109.46971 * 30.01742 * 10 9 8 40 40 H 1.09002 * 109.47358 * 150.01578 * 10 9 8 41 41 H 1.08997 * 110.72487 * 337.48481 * 14 12 4 42 42 H 1.08996 * 110.72047 * 100.77169 * 14 12 4 43 43 H 1.08998 * 110.59099 * 278.87186 * 15 14 12 44 44 H 1.08999 * 110.82390 * 155.85093 * 15 14 12 45 45 H 1.09003 * 109.47156 * 47.39538 * 17 16 15 46 46 H 1.08997 * 109.47650 * 167.39419 * 17 16 15 47 47 H 1.09005 * 109.47014 * 305.00438 * 22 18 17 48 48 H 1.09000 * 109.47124 * 64.99903 * 22 18 17 49 49 H 0.97001 * 120.00142 * 180.02562 * 26 25 23 50 50 H 1.08998 * 109.91908 * 265.97941 * 31 16 15 51 51 H 1.08995 * 110.08366 * 144.77231 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.4513 -2.4342 -0.0944 6 6 1.1672 -2.7441 -1.5416 7 7 1.9446 -3.4189 -2.3396 8 6 1.3602 -3.4949 -3.5484 9 6 0.1926 -2.8343 -3.4790 10 6 -0.8001 -2.6510 -4.5979 11 8 0.0761 -2.3662 -2.2208 12 6 3.6428 -1.1691 0.0930 13 1 4.0244 -2.1880 0.0257 14 6 4.0968 -0.5125 1.4169 15 6 5.3466 0.2998 0.9882 16 7 4.9781 0.8080 -0.3580 17 6 6.1737 1.1851 -1.1237 18 6 6.7581 2.4787 -0.5528 19 1 6.9467 2.3526 0.5134 20 6 5.8026 3.5800 -0.7552 21 7 5.0653 4.4296 -0.9131 22 6 8.0708 2.8045 -1.2678 23 6 8.7082 4.0087 -0.6239 24 1 8.2254 4.4929 0.2121 25 6 9.9076 4.4922 -1.1020 26 7 10.4958 3.9023 -2.1197 27 14 10.6981 5.9845 -0.3034 28 1 10.9730 5.6933 1.1266 29 1 11.9721 6.3008 -0.9974 30 1 9.7776 7.1454 -0.4039 31 6 4.2507 -0.2962 -1.0206 32 1 -0.3633 -1.0239 -0.0872 33 1 -0.3632 0.5876 -0.8432 34 1 -0.3633 0.4365 0.9303 35 1 2.0541 -3.2335 0.3368 36 1 0.5111 -2.3534 0.4512 37 1 1.7598 -3.9932 -4.4193 38 1 -0.5648 -1.7391 -5.1466 39 1 -0.7482 -3.5050 -5.2733 40 1 -1.8054 -2.5764 -4.1831 41 1 3.3219 0.1486 1.8051 42 1 4.3619 -1.2716 2.1528 43 1 6.2222 -0.3466 0.9290 44 1 5.5261 1.1265 1.6756 45 1 6.9156 0.3895 -1.0542 46 1 5.9027 1.3388 -2.1682 47 1 8.7464 1.9523 -1.1933 48 1 7.8695 3.0178 -2.3176 49 1 11.3398 4.2422 -2.4558 50 1 4.9414 -0.8882 -1.6212 51 1 3.4582 0.1040 -1.6529 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089702317.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:10 Heat of formation + Delta-G solvation = 3.343359 kcal Electronic energy + Delta-G solvation = -32695.113458 eV Core-core repulsion = 28402.759605 eV Total energy + Delta-G solvation = -4292.353853 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.195 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -44.31664 -41.47782 -39.49286 -37.83749 -36.77076 -35.71154 -35.59707 -34.23979 -33.32089 -31.94977 -30.63712 -29.91453 -28.88810 -27.75232 -26.18694 -24.96185 -23.57690 -23.50496 -22.64409 -22.11845 -21.99801 -19.86184 -18.61900 -18.35909 -18.19716 -18.00643 -17.55701 -17.20764 -16.75008 -16.49493 -16.27743 -15.87543 -15.46325 -15.26800 -15.04971 -14.78493 -14.66342 -14.41545 -14.19737 -14.16690 -13.92335 -13.82737 -13.73271 -13.60056 -13.31255 -13.23032 -13.18063 -13.05399 -12.92363 -12.78684 -12.76288 -12.62164 -12.44878 -12.39822 -12.31978 -12.14831 -11.84352 -11.77719 -11.54037 -11.38020 -11.16310 -10.62583 -10.56726 -9.95521 -9.64177 -9.18634 -8.20749 -6.29445 0.37170 1.39195 1.41542 1.43661 1.48818 1.59818 1.84138 2.03769 2.12231 2.13185 2.40393 3.03466 3.07150 3.14122 3.33830 3.54377 3.72568 3.78115 3.85858 4.00483 4.07117 4.12694 4.21299 4.27618 4.33644 4.39826 4.43545 4.46713 4.54150 4.58762 4.63601 4.64852 4.68843 4.71021 4.73982 4.82735 4.92390 4.97759 5.02675 5.02956 5.06004 5.18285 5.22142 5.33439 5.42943 5.57559 5.59889 5.76514 6.04596 6.10462 6.22079 6.31781 6.72316 6.80488 6.91372 7.22392 7.38734 8.90175 Molecular weight = 360.19amu Principal moments of inertia in cm(-1) A = 0.015742 B = 0.002135 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.247547 B =13110.971942 C =13534.845822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.496 3.504 3 O -0.547 6.547 4 N -0.602 5.602 5 C 0.206 3.794 6 C 0.153 3.847 7 N -0.490 5.490 8 C -0.068 4.068 9 C -0.044 4.044 10 C -0.069 4.069 11 O -0.206 6.206 12 C 0.145 3.855 13 H 0.128 0.872 14 C -0.116 4.116 15 C 0.032 3.968 16 N -0.524 5.524 17 C 0.065 3.935 18 C 0.027 3.973 19 H 0.115 0.885 20 C 0.266 3.734 21 N -0.518 5.518 22 C 0.041 3.959 23 C -0.540 4.540 24 H 0.052 0.948 25 C 0.011 3.989 26 N -0.923 5.923 27 Si 0.951 3.049 28 H -0.261 1.261 29 H -0.279 1.279 30 H -0.283 1.283 31 C 0.047 3.953 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.151 0.849 36 H 0.143 0.857 37 H 0.198 0.802 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.089 0.911 41 H 0.060 0.940 42 H 0.108 0.892 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.038 0.962 48 H -0.003 1.003 49 H 0.265 0.735 50 H 0.050 0.950 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.420 -25.307 3.436 35.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.286 3.714 3 O -0.423 6.423 4 N -0.336 5.336 5 C 0.082 3.918 6 C -0.055 4.055 7 N -0.220 5.220 8 C -0.206 4.206 9 C -0.098 4.098 10 C -0.126 4.126 11 O -0.093 6.093 12 C 0.041 3.959 13 H 0.145 0.855 14 C -0.155 4.155 15 C -0.096 4.096 16 N -0.249 5.249 17 C -0.064 4.064 18 C 0.005 3.995 19 H 0.132 0.868 20 C -0.050 4.050 21 N -0.196 5.196 22 C 0.002 3.998 23 C -0.578 4.578 24 H 0.070 0.930 25 C -0.188 4.188 26 N -0.563 5.563 27 Si 0.776 3.224 28 H -0.185 1.185 29 H -0.204 1.204 30 H -0.209 1.209 31 C -0.082 4.082 32 H 0.120 0.880 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.169 0.831 36 H 0.160 0.840 37 H 0.215 0.785 38 H 0.106 0.894 39 H 0.132 0.868 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.127 0.873 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.079 0.921 47 H 0.056 0.944 48 H 0.015 0.985 49 H 0.074 0.926 50 H 0.068 0.932 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -24.847 -23.196 3.333 34.154 hybrid contribution 0.929 0.590 -0.695 1.301 sum -23.918 -22.606 2.637 33.016 Atomic orbital electron populations 1.22017 0.89499 1.05796 1.05629 1.21537 0.91809 0.83105 0.74967 1.90932 1.71153 1.32170 1.48040 1.48209 1.06452 1.05788 1.73194 1.20380 1.01397 0.87342 0.82640 1.27393 0.82232 0.97064 0.98810 1.70373 1.30610 1.18379 1.02667 1.23489 0.94187 1.05659 0.97283 1.24202 1.00618 0.99929 0.85037 1.20485 0.95685 1.05077 0.91331 1.84386 1.42017 1.61017 1.21909 1.22056 0.79063 1.00540 0.94263 0.85468 1.22796 0.96902 0.99215 0.96594 1.23335 0.97582 0.98322 0.90333 1.64633 1.20685 1.36340 1.03218 1.22215 0.91861 0.95116 0.97229 1.19126 0.90224 0.86813 1.03324 0.86752 1.29415 0.91522 0.93142 0.90953 1.80936 1.13893 1.13403 1.11320 1.18977 0.89733 0.96750 0.94354 1.21487 1.06064 1.13909 1.16356 0.92988 1.25734 0.97810 0.99722 0.95510 1.70030 1.18153 1.42124 1.25988 0.85717 0.77610 0.79624 0.79441 1.18532 1.20427 1.20878 1.22888 0.97181 0.91321 0.96824 0.88002 0.89809 0.87298 0.83106 0.83978 0.78493 0.89411 0.86781 0.89261 0.92109 0.87338 0.91389 0.91032 0.90608 0.92142 0.94415 0.98462 0.92624 0.93193 0.93931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 9.99 71.24 0.71 -1.68 16 2 C 0.50 11.16 6.56 87.66 0.58 11.74 16 3 O -0.55 -18.86 13.94 -3.02 -0.04 -18.90 16 4 N -0.60 -10.04 2.46 -797.24 -1.96 -12.01 16 5 C 0.21 1.87 5.65 85.63 0.48 2.36 16 6 C 0.15 2.41 7.74 88.34 0.68 3.09 16 7 N -0.49 -9.52 11.29 -303.83 -3.43 -12.95 16 8 C -0.07 -1.13 11.80 83.39 0.98 -0.14 16 9 C -0.04 -0.64 7.39 24.79 0.18 -0.46 16 10 C -0.07 -0.45 10.43 71.24 0.74 0.29 16 11 O -0.21 -3.34 10.21 -3.70 -0.04 -3.38 16 12 C 0.14 2.71 3.45 45.88 0.16 2.87 16 13 H 0.13 1.68 7.79 -2.39 -0.02 1.66 16 14 C -0.12 -2.25 6.32 31.86 0.20 -2.05 16 15 C 0.03 0.79 5.91 86.71 0.51 1.30 16 16 N -0.52 -16.60 4.51 -882.66 -3.98 -20.58 16 17 C 0.07 2.22 4.07 86.30 0.35 2.57 16 18 C 0.03 1.11 2.24 -12.60 -0.03 1.08 16 19 H 0.11 4.34 7.17 -2.39 -0.02 4.32 16 20 C 0.27 12.74 13.67 89.44 1.22 13.96 16 21 N -0.52 -27.02 18.54 20.01 0.37 -26.65 16 22 C 0.04 2.02 4.42 29.85 0.13 2.15 16 23 C -0.54 -30.20 8.60 25.60 0.22 -29.98 16 24 H 0.05 2.89 7.59 -2.91 -0.02 2.87 16 25 C 0.01 0.64 5.46 84.65 0.46 1.10 16 26 N -0.92 -54.70 13.29 21.45 0.28 -54.41 16 27 Si 0.95 45.00 29.54 68.60 2.03 47.02 16 28 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 29 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 30 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 31 C 0.05 1.28 5.41 86.45 0.47 1.75 16 32 H 0.10 0.82 4.84 -2.39 -0.01 0.81 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.15 0.61 7.85 -2.38 -0.02 0.59 16 36 H 0.14 0.38 6.17 -2.39 -0.01 0.37 16 37 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 38 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 40 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.06 1.48 6.62 -2.39 -0.02 1.47 16 42 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.07 1.42 7.81 -2.39 -0.02 1.40 16 44 H 0.07 1.96 7.67 -2.39 -0.02 1.94 16 45 H 0.08 2.22 7.83 -2.39 -0.02 2.21 16 46 H 0.06 2.21 8.08 -2.39 -0.02 2.19 16 47 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 48 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 49 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 50 H 0.05 1.28 7.77 -2.39 -0.02 1.26 16 51 H 0.04 1.45 6.79 -2.39 -0.02 1.44 16 Total: -1.00 -84.43 419.72 2.23 -82.20 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.94 Total: 9.71 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 8.07 Total: 9.95 kcal Atomic # 7 Polarization: -117.87 SS G_CDS: -8.72 Total: -126.60 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.08 Total: -22.29 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -84.43 2.23 -82.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089702317.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.541 kcal (2) G-P(sol) polarization free energy of solvation -84.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds