Wall clock time and date at job start Tue Mar 31 2020 06:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21283 * 120.00231 * 2 1 4 4 N 1.34776 * 119.99831 * 180.02562 * 2 1 3 5 5 C 1.46503 * 120.00273 * 355.15313 * 4 2 1 6 6 C 1.50705 * 109.46920 * 275.55424 * 5 4 2 7 7 N 1.30255 * 125.62105 * 89.68906 * 6 5 4 8 8 C 1.34482 * 108.70094 * 179.83776 * 7 6 5 9 9 C 1.34320 * 107.66700 * 0.42481 * 8 7 6 10 10 C 1.50705 * 126.44371 * 179.76605 * 9 8 7 11 11 O 1.33969 * 125.62009 * 270.00024 * 6 5 4 12 12 C 1.46503 * 120.00072 * 175.15692 * 4 2 1 13 13 H 1.08998 * 110.27518 * 182.09274 * 12 4 2 14 14 C 1.54602 * 110.30659 * 304.27956 * 12 4 2 15 15 C 1.54936 * 102.91956 * 140.87492 * 14 12 4 16 16 N 1.48531 * 103.22785 * 322.58529 * 15 14 12 17 17 C 1.46900 * 110.99963 * 159.72182 * 16 15 14 18 18 C 1.53003 * 109.46894 * 52.60226 * 17 16 15 19 19 H 1.08996 * 109.47106 * 55.00415 * 18 17 16 20 20 C 1.47199 * 109.47446 * 295.00248 * 18 17 16 21 21 N 6.71248 * 162.86370 * 301.04080 * 2 1 3 22 22 C 1.52999 * 109.46996 * 174.99875 * 18 17 16 23 23 C 1.50694 * 109.47460 * 185.00145 * 22 18 17 24 24 H 1.08010 * 119.99789 * 359.72346 * 23 22 18 25 25 C 1.37873 * 120.00734 * 179.97438 * 23 22 18 26 26 N 1.31522 * 119.99396 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00404 * 179.97438 * 25 23 22 28 28 H 1.48492 * 109.47161 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.46898 * 120.00613 * 27 25 23 30 30 H 1.48503 * 109.47042 * 240.00031 * 27 25 23 31 31 C 1.47902 * 105.81958 * 39.20781 * 16 15 14 32 32 H 1.08997 * 109.47289 * 185.34230 * 1 2 3 33 33 H 1.09001 * 109.46681 * 305.33926 * 1 2 3 34 34 H 1.08996 * 109.47393 * 65.33857 * 1 2 3 35 35 H 1.09000 * 109.46918 * 35.54684 * 5 4 2 36 36 H 1.09000 * 109.47532 * 155.55368 * 5 4 2 37 37 H 1.08004 * 126.16112 * 180.16837 * 8 7 6 38 38 H 1.09000 * 109.46892 * 269.97597 * 10 9 8 39 39 H 1.09001 * 109.46766 * 29.97204 * 10 9 8 40 40 H 1.09000 * 109.47392 * 149.97464 * 10 9 8 41 41 H 1.09002 * 110.72240 * 259.23522 * 14 12 4 42 42 H 1.08996 * 110.72511 * 22.33696 * 14 12 4 43 43 H 1.09007 * 110.66262 * 204.15109 * 15 14 12 44 44 H 1.09004 * 110.66565 * 81.02428 * 15 14 12 45 45 H 1.09002 * 109.47096 * 292.60784 * 17 16 15 46 46 H 1.08993 * 109.47202 * 172.60260 * 17 16 15 47 47 H 1.08999 * 109.47205 * 65.00181 * 22 18 17 48 48 H 1.09000 * 109.47160 * 305.00433 * 22 18 17 49 49 H 0.97005 * 119.99766 * 180.02562 * 26 25 23 50 50 H 1.08998 * 109.91642 * 94.02211 * 31 16 15 51 51 H 1.09001 * 109.91800 * 215.31162 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.4522 -2.4338 0.1061 6 6 1.1870 -2.7400 1.5577 7 7 0.1377 -2.3658 2.2326 8 6 0.2481 -2.8256 3.4915 9 6 1.4101 -3.4933 3.5811 10 6 1.9574 -4.1772 4.8075 11 8 1.9945 -3.4371 2.3682 12 6 3.6419 -1.1695 -0.1076 13 1 4.0174 -2.1925 -0.1298 14 6 4.0882 -0.4044 -1.3748 15 6 5.3469 0.3597 -0.8928 16 7 4.9939 0.7552 0.4946 17 6 6.1987 1.0600 1.2779 18 6 7.0523 2.0816 0.5238 19 1 6.4493 2.9602 0.2944 20 6 7.5428 1.4827 -0.7281 21 7 7.9214 1.0199 -1.6946 22 6 8.2423 2.4927 1.3931 23 6 9.0141 3.5876 0.7030 24 1 8.6910 3.9507 -0.2616 25 6 10.1358 4.1225 1.3003 26 7 10.5324 3.6766 2.4724 27 14 11.0928 5.4792 0.4444 28 1 10.4451 5.7992 -0.8529 29 1 11.1076 6.6914 1.3022 30 1 12.4864 5.0260 0.2040 31 6 4.2653 -0.3965 1.0693 32 1 -0.3634 -1.0232 0.0957 33 1 -0.3633 0.5944 0.8383 34 1 -0.3634 0.4288 -0.9339 35 1 0.5050 -2.3540 -0.4273 36 1 2.0491 -3.2343 -0.3309 37 1 -0.4666 -2.6802 4.2880 38 1 2.5677 -3.4738 5.3739 39 1 1.1317 -4.5242 5.4289 40 1 2.5684 -5.0283 4.5068 41 1 4.3417 -1.0992 -2.1756 42 1 3.3130 0.2897 -1.6994 43 1 5.5226 1.2401 -1.5110 44 1 6.2188 -0.2945 -0.8964 45 1 6.7743 0.1467 1.4293 46 1 5.9091 1.4714 2.2447 47 1 8.8930 1.6322 1.5488 48 1 7.8813 2.8541 2.3560 49 1 11.3213 4.0531 2.8929 50 1 4.9576 -1.0407 1.6114 51 1 3.4810 -0.0433 1.7387 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089702318.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:16 Heat of formation + Delta-G solvation = 41.932746 kcal Electronic energy + Delta-G solvation = -32841.876978 eV Core-core repulsion = 28551.196487 eV Total energy + Delta-G solvation = -4290.680491 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.195 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.70881 -40.63130 -38.62744 -36.44329 -35.68425 -35.01612 -33.97306 -32.97263 -32.33534 -30.67941 -29.67030 -29.20215 -27.81817 -26.18624 -25.64011 -23.57048 -22.71796 -22.27035 -21.73557 -21.24837 -20.67516 -19.00989 -17.72900 -17.37763 -16.92046 -16.83693 -16.46084 -16.33102 -15.65431 -15.39236 -14.87757 -14.70379 -14.56268 -14.35980 -14.09018 -13.74770 -13.62506 -13.53056 -13.31150 -13.15419 -13.06142 -12.80138 -12.63471 -12.43816 -12.36656 -12.20622 -11.97304 -11.93570 -11.75623 -11.68775 -11.58720 -11.20633 -10.99167 -10.90510 -10.88025 -10.75343 -10.62439 -10.41433 -10.17861 -9.66894 -9.52587 -9.23391 -9.13918 -8.97624 -8.42702 -8.08441 -6.06591 -4.09229 0.97648 2.09791 2.23961 2.57265 2.81382 3.30889 3.38703 3.44128 3.58659 3.61042 3.65380 4.13707 4.21403 4.37448 4.44564 4.48312 4.55792 4.63969 4.73313 4.77453 4.85278 4.89526 4.95593 4.97354 5.11073 5.15921 5.27964 5.31403 5.32191 5.38253 5.45410 5.55633 5.61458 5.64854 5.73200 5.75673 5.77566 5.84238 5.90874 6.07273 6.13221 6.27414 6.40410 6.42437 6.59896 7.01850 7.13742 7.28565 7.32655 7.47939 7.56880 7.88990 8.06791 8.26883 8.43176 8.95462 9.55984 11.04441 Molecular weight = 360.19amu Principal moments of inertia in cm(-1) A = 0.014245 B = 0.002237 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.138342 B =12513.880393 C =13463.318030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.508 3.492 3 O -0.492 6.492 4 N -0.610 5.610 5 C 0.207 3.793 6 C 0.162 3.838 7 N -0.466 5.466 8 C -0.045 4.045 9 C -0.039 4.039 10 C -0.071 4.071 11 O -0.196 6.196 12 C 0.137 3.863 13 H 0.093 0.907 14 C -0.128 4.128 15 C 0.033 3.967 16 N -0.496 5.496 17 C 0.054 3.946 18 C 0.004 3.996 19 H 0.111 0.889 20 C 0.250 3.750 21 N -0.483 5.483 22 C 0.033 3.967 23 C -0.523 4.523 24 H 0.057 0.943 25 C 0.061 3.939 26 N -0.892 5.892 27 Si 0.891 3.109 28 H -0.272 1.272 29 H -0.282 1.282 30 H -0.284 1.284 31 C 0.039 3.961 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.126 0.874 36 H 0.110 0.890 37 H 0.183 0.817 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.048 0.952 45 H 0.037 0.963 46 H 0.093 0.907 47 H 0.023 0.977 48 H 0.040 0.960 49 H 0.261 0.739 50 H 0.044 0.956 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.690 -19.229 1.632 31.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.296 3.704 3 O -0.364 6.364 4 N -0.346 5.346 5 C 0.082 3.918 6 C -0.047 4.047 7 N -0.195 5.195 8 C -0.184 4.184 9 C -0.093 4.093 10 C -0.128 4.128 11 O -0.082 6.082 12 C 0.033 3.967 13 H 0.111 0.889 14 C -0.167 4.167 15 C -0.095 4.095 16 N -0.220 5.220 17 C -0.075 4.075 18 C -0.018 4.018 19 H 0.129 0.871 20 C -0.066 4.066 21 N -0.160 5.160 22 C -0.006 4.006 23 C -0.562 4.562 24 H 0.075 0.925 25 C -0.140 4.140 26 N -0.531 5.531 27 Si 0.719 3.281 28 H -0.197 1.197 29 H -0.208 1.208 30 H -0.210 1.210 31 C -0.090 4.090 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.144 0.856 36 H 0.128 0.872 37 H 0.201 0.799 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.066 0.934 45 H 0.056 0.944 46 H 0.112 0.888 47 H 0.042 0.958 48 H 0.058 0.942 49 H 0.071 0.929 50 H 0.062 0.938 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -24.408 -18.470 0.032 30.609 hybrid contribution 1.546 -0.271 0.595 1.678 sum -22.862 -18.741 0.628 29.568 Atomic orbital electron populations 1.22012 0.91710 1.04934 1.04867 1.20922 0.90558 0.83131 0.75761 1.90894 1.69981 1.30012 1.45543 1.48245 1.06581 1.05310 1.74501 1.19919 1.00435 0.87847 0.83622 1.26904 0.86237 0.94954 0.96574 1.70382 1.23228 1.21383 1.04535 1.23076 0.98438 1.01583 0.95288 1.23566 0.95066 1.04280 0.86380 1.20319 1.02324 1.00195 0.89955 1.84404 1.45839 1.58305 1.19641 1.22062 0.78612 0.99843 0.96134 0.88851 1.22845 0.98823 0.99122 0.95905 1.23527 0.95622 0.99178 0.91183 1.64897 1.20778 1.34876 1.01429 1.22454 0.89321 0.97942 0.97754 1.19349 0.98778 0.96842 0.86781 0.87129 1.29111 0.91022 0.92185 0.94243 1.81066 1.11691 1.10883 1.12376 1.19158 0.89933 0.97007 0.94470 1.21187 1.10650 1.19467 1.04860 0.92457 1.24958 0.97222 0.96970 0.94893 1.69957 1.25118 1.42461 1.15581 0.86531 0.79867 0.81862 0.79808 1.19668 1.20818 1.21028 1.23074 0.98140 0.91533 0.96281 0.89856 0.88809 0.89070 0.85616 0.87200 0.79943 0.89473 0.88881 0.90241 0.91212 0.89343 0.89533 0.93382 0.94444 0.88839 0.95826 0.94210 0.92900 0.93766 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 10.00 36.00 0.36 -1.05 16 2 C 0.51 5.78 6.60 -10.99 -0.07 5.71 16 3 O -0.49 -7.81 13.97 5.55 0.08 -7.73 16 4 N -0.61 -5.72 2.44 -165.92 -0.41 -6.13 16 5 C 0.21 1.28 5.67 -5.19 -0.03 1.26 16 6 C 0.16 1.40 7.81 -12.94 -0.10 1.30 16 7 N -0.47 -4.42 10.66 -11.10 -0.12 -4.54 16 8 C -0.04 -0.37 11.80 -17.77 -0.21 -0.58 16 9 C -0.04 -0.31 7.39 -35.69 -0.26 -0.57 16 10 C -0.07 -0.31 10.43 36.01 0.38 0.07 16 11 O -0.20 -1.84 10.78 5.36 0.06 -1.78 16 12 C 0.14 1.50 3.46 -66.57 -0.23 1.26 16 13 H 0.09 0.82 7.76 -51.93 -0.40 0.42 16 14 C -0.13 -1.61 6.26 -24.87 -0.16 -1.76 16 15 C 0.03 0.52 4.35 -1.90 -0.01 0.51 16 16 N -0.50 -7.91 5.02 -230.45 -1.16 -9.06 16 17 C 0.05 0.91 4.71 -3.82 -0.02 0.89 16 18 C 0.00 0.09 2.29 -93.41 -0.21 -0.13 16 19 H 0.11 2.19 8.14 -51.93 -0.42 1.77 16 20 C 0.25 5.26 9.68 -20.74 -0.20 5.06 16 21 N -0.48 -10.62 17.37 42.17 0.73 -9.89 16 22 C 0.03 0.79 4.42 -27.89 -0.12 0.67 16 23 C -0.52 -14.37 8.60 -34.44 -0.30 -14.67 16 24 H 0.06 1.58 7.59 -52.48 -0.40 1.18 16 25 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 26 N -0.89 -26.06 13.29 55.43 0.74 -25.33 16 27 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 28 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 29 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 30 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 31 C 0.04 0.53 5.52 -2.76 -0.02 0.51 16 32 H 0.08 0.53 4.80 -51.93 -0.25 0.28 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.13 0.50 6.14 -51.93 -0.32 0.18 16 36 H 0.11 0.43 7.81 -51.93 -0.41 0.02 16 37 H 0.18 1.01 8.06 -52.48 -0.42 0.59 16 38 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 1.24 6.20 -51.93 -0.32 0.91 16 43 H 0.09 1.53 6.52 -51.93 -0.34 1.19 16 44 H 0.05 0.80 6.33 -51.93 -0.33 0.47 16 45 H 0.04 0.62 7.81 -51.93 -0.41 0.21 16 46 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 47 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 49 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 50 H 0.04 0.57 7.57 -51.93 -0.39 0.18 16 51 H 0.08 1.20 7.14 -51.93 -0.37 0.83 16 LS Contribution 412.29 15.07 6.21 6.21 Total: -1.00 -35.09 412.29 -7.90 -42.99 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -7.72 Total: -1.67 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -1.30 Total: 0.12 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.21 Total: -54.95 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.14 Total: -9.51 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.09 -7.90 -42.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089702318.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.923 kcal (2) G-P(sol) polarization free energy of solvation -35.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds