Wall clock time and date at job start Tue Mar 31 2020 06:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21283 * 120.00231 * 2 1 4 4 N 1.34776 * 119.99831 * 180.02562 * 2 1 3 5 5 C 1.46503 * 120.00273 * 355.15313 * 4 2 1 6 6 C 1.50705 * 109.46920 * 275.55424 * 5 4 2 7 7 N 1.30255 * 125.62105 * 89.68906 * 6 5 4 8 8 C 1.34482 * 108.70094 * 179.83776 * 7 6 5 9 9 C 1.34320 * 107.66700 * 0.42481 * 8 7 6 10 10 C 1.50705 * 126.44371 * 179.76605 * 9 8 7 11 11 O 1.33969 * 125.62009 * 270.00024 * 6 5 4 12 12 C 1.46503 * 120.00072 * 175.15692 * 4 2 1 13 13 H 1.08998 * 110.27518 * 182.09274 * 12 4 2 14 14 C 1.54602 * 110.30659 * 304.27956 * 12 4 2 15 15 C 1.54936 * 102.91956 * 140.87492 * 14 12 4 16 16 N 1.48531 * 103.22785 * 322.58529 * 15 14 12 17 17 C 1.46900 * 110.99963 * 159.72182 * 16 15 14 18 18 C 1.53003 * 109.46894 * 52.60226 * 17 16 15 19 19 H 1.08996 * 109.47106 * 55.00415 * 18 17 16 20 20 C 1.47199 * 109.47446 * 295.00248 * 18 17 16 21 21 N 6.71248 * 162.86370 * 301.04080 * 2 1 3 22 22 C 1.52999 * 109.46996 * 174.99875 * 18 17 16 23 23 C 1.50694 * 109.47460 * 185.00145 * 22 18 17 24 24 H 1.08010 * 119.99789 * 359.72346 * 23 22 18 25 25 C 1.37873 * 120.00734 * 179.97438 * 23 22 18 26 26 N 1.31522 * 119.99396 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00404 * 179.97438 * 25 23 22 28 28 H 1.48492 * 109.47161 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.46898 * 120.00613 * 27 25 23 30 30 H 1.48503 * 109.47042 * 240.00031 * 27 25 23 31 31 C 1.47902 * 105.81958 * 39.20781 * 16 15 14 32 32 H 1.08997 * 109.47289 * 185.34230 * 1 2 3 33 33 H 1.09001 * 109.46681 * 305.33926 * 1 2 3 34 34 H 1.08996 * 109.47393 * 65.33857 * 1 2 3 35 35 H 1.09000 * 109.46918 * 35.54684 * 5 4 2 36 36 H 1.09000 * 109.47532 * 155.55368 * 5 4 2 37 37 H 1.08004 * 126.16112 * 180.16837 * 8 7 6 38 38 H 1.09000 * 109.46892 * 269.97597 * 10 9 8 39 39 H 1.09001 * 109.46766 * 29.97204 * 10 9 8 40 40 H 1.09000 * 109.47392 * 149.97464 * 10 9 8 41 41 H 1.09002 * 110.72240 * 259.23522 * 14 12 4 42 42 H 1.08996 * 110.72511 * 22.33696 * 14 12 4 43 43 H 1.09007 * 110.66262 * 204.15109 * 15 14 12 44 44 H 1.09004 * 110.66565 * 81.02428 * 15 14 12 45 45 H 1.09002 * 109.47096 * 292.60784 * 17 16 15 46 46 H 1.08993 * 109.47202 * 172.60260 * 17 16 15 47 47 H 1.08999 * 109.47205 * 65.00181 * 22 18 17 48 48 H 1.09000 * 109.47160 * 305.00433 * 22 18 17 49 49 H 0.97005 * 119.99766 * 180.02562 * 26 25 23 50 50 H 1.08998 * 109.91642 * 94.02211 * 31 16 15 51 51 H 1.09001 * 109.91800 * 215.31162 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.4522 -2.4338 0.1061 6 6 1.1870 -2.7400 1.5577 7 7 0.1377 -2.3658 2.2326 8 6 0.2481 -2.8256 3.4915 9 6 1.4101 -3.4933 3.5811 10 6 1.9574 -4.1772 4.8075 11 8 1.9945 -3.4371 2.3682 12 6 3.6419 -1.1695 -0.1076 13 1 4.0174 -2.1925 -0.1298 14 6 4.0882 -0.4044 -1.3748 15 6 5.3469 0.3597 -0.8928 16 7 4.9939 0.7552 0.4946 17 6 6.1987 1.0600 1.2779 18 6 7.0523 2.0816 0.5238 19 1 6.4493 2.9602 0.2944 20 6 7.5428 1.4827 -0.7281 21 7 7.9214 1.0199 -1.6946 22 6 8.2423 2.4927 1.3931 23 6 9.0141 3.5876 0.7030 24 1 8.6910 3.9507 -0.2616 25 6 10.1358 4.1225 1.3003 26 7 10.5324 3.6766 2.4724 27 14 11.0928 5.4792 0.4444 28 1 10.4451 5.7992 -0.8529 29 1 11.1076 6.6914 1.3022 30 1 12.4864 5.0260 0.2040 31 6 4.2653 -0.3965 1.0693 32 1 -0.3634 -1.0232 0.0957 33 1 -0.3633 0.5944 0.8383 34 1 -0.3634 0.4288 -0.9339 35 1 0.5050 -2.3540 -0.4273 36 1 2.0491 -3.2343 -0.3309 37 1 -0.4666 -2.6802 4.2880 38 1 2.5677 -3.4738 5.3739 39 1 1.1317 -4.5242 5.4289 40 1 2.5684 -5.0283 4.5068 41 1 4.3417 -1.0992 -2.1756 42 1 3.3130 0.2897 -1.6994 43 1 5.5226 1.2401 -1.5110 44 1 6.2188 -0.2945 -0.8964 45 1 6.7743 0.1467 1.4293 46 1 5.9091 1.4714 2.2447 47 1 8.8930 1.6322 1.5488 48 1 7.8813 2.8541 2.3560 49 1 11.3213 4.0531 2.8929 50 1 4.9576 -1.0407 1.6114 51 1 3.4810 -0.0433 1.7387 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089702318.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:15 Heat of formation + Delta-G solvation = 17.003500 kcal Electronic energy + Delta-G solvation = -32842.957991 eV Core-core repulsion = 28551.196487 eV Total energy + Delta-G solvation = -4291.761504 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.195 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -44.29485 -41.57499 -39.88751 -37.75427 -36.69646 -35.80969 -35.63468 -34.28581 -33.31471 -31.96641 -30.62657 -29.92206 -28.98228 -27.69098 -26.21231 -25.07540 -23.86483 -23.31440 -22.80121 -21.99856 -21.97752 -19.83968 -18.73358 -18.45063 -18.25770 -17.98741 -17.67357 -17.18651 -16.84534 -16.44879 -16.25865 -15.77683 -15.50880 -15.37868 -15.20597 -14.88939 -14.61757 -14.50755 -14.25298 -14.12652 -14.01876 -13.85704 -13.69700 -13.63485 -13.37063 -13.23691 -13.20854 -13.08940 -13.00358 -12.78683 -12.67350 -12.57478 -12.51529 -12.29212 -12.26050 -12.17783 -11.93144 -11.83187 -11.51347 -11.45048 -11.15833 -10.58989 -10.58661 -9.97403 -9.62240 -9.33442 -8.22730 -6.31357 0.39041 1.37006 1.39083 1.47089 1.50578 1.63772 1.82785 1.88181 1.92011 2.11721 2.38884 2.95311 3.08669 3.11343 3.18125 3.53063 3.58565 3.72837 3.85203 4.00960 4.06432 4.10602 4.15044 4.19570 4.29303 4.31444 4.38482 4.47557 4.49762 4.57848 4.65892 4.67084 4.68429 4.68808 4.72090 4.83927 4.84829 4.86362 4.92223 5.03849 5.09643 5.14315 5.21531 5.36580 5.41254 5.53127 5.55840 5.74837 5.88735 5.99948 6.17512 6.31463 6.69463 6.73162 6.82342 7.24010 7.37109 8.88608 Molecular weight = 360.19amu Principal moments of inertia in cm(-1) A = 0.014245 B = 0.002237 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.138342 B =12513.880393 C =13463.318030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.503 3.497 3 O -0.546 6.546 4 N -0.603 5.603 5 C 0.204 3.796 6 C 0.152 3.848 7 N -0.484 5.484 8 C -0.063 4.063 9 C -0.046 4.046 10 C -0.070 4.070 11 O -0.210 6.210 12 C 0.143 3.857 13 H 0.125 0.875 14 C -0.119 4.119 15 C 0.035 3.965 16 N -0.509 5.509 17 C 0.064 3.936 18 C 0.017 3.983 19 H 0.111 0.889 20 C 0.257 3.743 21 N -0.498 5.498 22 C 0.042 3.958 23 C -0.539 4.539 24 H 0.051 0.949 25 C 0.011 3.989 26 N -0.923 5.923 27 Si 0.951 3.049 28 H -0.271 1.271 29 H -0.272 1.272 30 H -0.281 1.281 31 C 0.041 3.959 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.151 0.849 36 H 0.141 0.859 37 H 0.202 0.798 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.039 0.961 45 H 0.042 0.958 46 H 0.099 0.901 47 H 0.003 0.997 48 H 0.033 0.967 49 H 0.265 0.735 50 H 0.053 0.947 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.949 -20.854 1.279 33.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.294 3.706 3 O -0.422 6.422 4 N -0.338 5.338 5 C 0.080 3.920 6 C -0.056 4.056 7 N -0.214 5.214 8 C -0.202 4.202 9 C -0.099 4.099 10 C -0.127 4.127 11 O -0.097 6.097 12 C 0.039 3.961 13 H 0.143 0.857 14 C -0.157 4.157 15 C -0.094 4.094 16 N -0.233 5.233 17 C -0.065 4.065 18 C -0.005 4.005 19 H 0.129 0.871 20 C -0.059 4.059 21 N -0.176 5.176 22 C 0.003 3.997 23 C -0.577 4.577 24 H 0.070 0.930 25 C -0.188 4.188 26 N -0.563 5.563 27 Si 0.777 3.223 28 H -0.196 1.196 29 H -0.197 1.197 30 H -0.207 1.207 31 C -0.088 4.088 32 H 0.120 0.880 33 H 0.103 0.897 34 H 0.124 0.876 35 H 0.169 0.831 36 H 0.158 0.842 37 H 0.219 0.781 38 H 0.107 0.893 39 H 0.133 0.867 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.118 0.882 47 H 0.022 0.978 48 H 0.051 0.949 49 H 0.074 0.926 50 H 0.071 0.929 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -25.698 -20.135 -0.316 32.648 hybrid contribution 1.896 0.209 0.755 2.051 sum -23.802 -19.926 0.439 31.045 Atomic orbital electron populations 1.21979 0.89239 1.06095 1.05246 1.21511 0.91780 0.82860 0.74493 1.90872 1.71177 1.31997 1.48157 1.48208 1.06023 1.06167 1.73382 1.20357 1.01929 0.86948 0.82737 1.27328 0.86077 0.94867 0.97288 1.70363 1.23926 1.21870 1.05286 1.23494 0.99260 1.01880 0.95522 1.24199 0.95002 1.03999 0.86715 1.20482 1.03245 1.00086 0.88854 1.84404 1.46340 1.58631 1.20325 1.22030 0.79619 1.00683 0.93795 0.85695 1.22759 0.96713 0.99030 0.97235 1.23391 0.96920 0.98272 0.90785 1.64826 1.20097 1.36689 1.01649 1.22306 0.89457 0.97169 0.97543 1.19170 0.97528 0.97870 0.85937 0.87102 1.29252 0.90573 0.91800 0.94245 1.81047 1.12159 1.11574 1.12812 1.18957 0.90764 0.95339 0.94661 1.21535 1.11170 1.20231 1.04794 0.93030 1.25734 0.98280 0.99190 0.95576 1.70045 1.25745 1.43726 1.16746 0.85596 0.78381 0.79478 0.78848 1.19551 1.19701 1.20724 1.23058 0.97587 0.90967 0.97154 0.87975 0.89693 0.87603 0.83129 0.84159 0.78140 0.89274 0.86659 0.89749 0.88907 0.90865 0.92112 0.94311 0.93990 0.88244 0.97829 0.94905 0.92609 0.92925 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 10.00 71.23 0.71 -1.71 16 2 C 0.50 10.98 6.60 87.66 0.58 11.56 16 3 O -0.55 -17.49 13.97 -3.04 -0.04 -17.53 16 4 N -0.60 -10.08 2.44 -797.24 -1.95 -12.03 16 5 C 0.20 1.91 5.67 85.63 0.49 2.39 16 6 C 0.15 2.34 7.81 88.34 0.69 3.03 16 7 N -0.48 -8.45 10.66 -303.82 -3.24 -11.69 16 8 C -0.06 -0.95 11.80 83.39 0.98 0.03 16 9 C -0.05 -0.65 7.39 24.79 0.18 -0.47 16 10 C -0.07 -0.48 10.43 71.24 0.74 0.26 16 11 O -0.21 -3.58 10.78 -3.73 -0.04 -3.62 16 12 C 0.14 2.83 3.46 45.87 0.16 2.99 16 13 H 0.13 1.74 7.76 -2.39 -0.02 1.72 16 14 C -0.12 -2.82 6.26 31.80 0.20 -2.62 16 15 C 0.03 1.08 4.35 86.65 0.38 1.46 16 16 N -0.51 -16.24 5.02 -883.02 -4.44 -20.67 16 17 C 0.06 2.17 4.71 86.30 0.41 2.58 16 18 C 0.02 0.68 2.29 -12.60 -0.03 0.65 16 19 H 0.11 4.49 8.14 -2.39 -0.02 4.47 16 20 C 0.26 10.94 9.68 89.44 0.87 11.81 16 21 N -0.50 -22.06 17.37 20.01 0.35 -21.71 16 22 C 0.04 2.04 4.42 29.85 0.13 2.18 16 23 C -0.54 -29.97 8.60 25.60 0.22 -29.75 16 24 H 0.05 2.87 7.59 -2.91 -0.02 2.84 16 25 C 0.01 0.63 5.46 84.65 0.46 1.09 16 26 N -0.92 -54.33 13.29 21.45 0.28 -54.05 16 27 Si 0.95 44.82 29.54 68.60 2.03 46.84 16 28 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 29 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 30 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 31 C 0.04 1.08 5.52 86.44 0.48 1.56 16 32 H 0.10 1.06 4.80 -2.39 -0.01 1.05 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.15 0.65 6.14 -2.39 -0.01 0.64 16 36 H 0.14 0.49 7.81 -2.39 -0.02 0.48 16 37 H 0.20 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.07 2.01 6.20 -2.39 -0.01 1.99 16 43 H 0.06 2.20 6.52 -2.38 -0.02 2.18 16 44 H 0.04 1.28 6.33 -2.38 -0.02 1.26 16 45 H 0.04 1.37 7.81 -2.39 -0.02 1.35 16 46 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 47 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 48 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 50 H 0.05 1.29 7.57 -2.39 -0.02 1.27 16 51 H 0.06 1.85 7.14 -2.39 -0.02 1.84 16 Total: -1.00 -77.20 412.29 1.55 -75.65 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 0.95 Total: 11.76 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 7.65 Total: 7.04 kcal Atomic # 7 Polarization: -111.16 SS G_CDS: -8.99 Total: -120.15 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.08 Total: -21.15 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -77.20 1.55 -75.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089702318.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.656 kcal (2) G-P(sol) polarization free energy of solvation -77.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds