Wall clock time and date at job start Tue Mar 31 2020 06:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21280 * 120.00407 * 2 1 4 4 N 1.34776 * 119.99995 * 179.97438 * 2 1 3 5 5 C 1.46928 * 120.62797 * 354.39495 * 4 2 1 6 6 C 1.53197 * 108.77636 * 233.58780 * 5 4 2 7 7 C 1.53047 * 109.30860 * 305.36444 * 6 5 4 8 8 H 1.09001 * 109.46122 * 301.35697 * 7 6 5 9 9 N 1.46901 * 109.45786 * 181.38674 * 7 6 5 10 10 C 1.46895 * 111.00104 * 85.00095 * 9 7 6 11 11 C 1.50697 * 109.47191 * 180.02562 * 10 9 7 12 12 C 1.38295 * 119.97045 * 269.97411 * 11 10 9 13 13 C 1.38237 * 120.10846 * 179.97438 * 12 11 10 14 14 C 1.38169 * 120.05978 * 359.77688 * 13 12 11 15 15 C 1.38712 * 119.94018 * 0.52004 * 14 13 12 16 16 O 1.35900 * 120.05092 * 179.72151 * 15 14 13 17 17 C 1.42893 * 117.00328 * 359.73398 * 16 15 14 18 18 C 1.53003 * 109.47257 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.47389 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99553 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00004 * 179.72594 * 19 18 17 22 22 N 1.31514 * 120.00040 * 0.27041 * 21 19 18 23 23 Si 1.86800 * 119.99967 * 180.27547 * 21 19 18 24 24 H 1.48497 * 109.47088 * 59.99715 * 23 21 19 25 25 H 1.48500 * 109.47269 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47276 * 299.99883 * 23 21 19 27 27 C 1.38118 * 119.97510 * 90.00014 * 11 10 9 28 28 C 1.53041 * 109.53798 * 61.36708 * 7 6 5 29 29 H 1.08998 * 109.49921 * 58.58443 * 28 7 6 30 30 C 1.52998 * 109.49525 * 178.68438 * 28 7 6 31 31 C 1.46922 * 120.63440 * 174.37414 * 4 2 1 32 32 H 1.08997 * 109.47187 * 184.88173 * 1 2 3 33 33 H 1.09003 * 109.46968 * 304.88507 * 1 2 3 34 34 H 1.08998 * 109.46573 * 64.87961 * 1 2 3 35 35 H 1.09004 * 109.58923 * 113.80095 * 5 4 2 36 36 H 1.09000 * 109.58821 * 353.37053 * 5 4 2 37 37 H 1.09000 * 109.49916 * 185.41885 * 6 5 4 38 38 H 1.08997 * 109.52479 * 65.33037 * 6 5 4 39 39 H 1.00897 * 110.99730 * 321.04319 * 9 7 6 40 40 H 1.09000 * 109.47054 * 59.99591 * 10 9 7 41 41 H 1.09001 * 109.47236 * 299.99960 * 10 9 7 42 42 H 1.07994 * 119.94065 * 0.02562 * 12 11 10 43 43 H 1.08004 * 119.96935 * 180.02562 * 13 12 11 44 44 H 1.08000 * 120.02870 * 180.24968 * 14 13 12 45 45 H 1.08999 * 109.47460 * 59.99604 * 17 16 15 46 46 H 1.09001 * 109.47179 * 299.99232 * 17 16 15 47 47 H 1.08999 * 109.46983 * 59.99589 * 18 17 16 48 48 H 1.09007 * 109.46884 * 300.00213 * 18 17 16 49 49 H 0.97000 * 119.99974 * 180.02562 * 22 21 19 50 50 H 1.08002 * 120.02850 * 0.02562 * 27 11 10 51 51 H 1.08998 * 109.47492 * 59.99746 * 30 28 7 52 52 H 1.09001 * 109.46827 * 179.97438 * 30 28 7 53 53 H 1.08998 * 109.46864 * 299.99358 * 30 28 7 54 54 H 1.08999 * 109.58328 * 246.20552 * 31 4 2 55 55 H 1.08997 * 109.58457 * 6.62342 * 31 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4655 -2.4445 0.1246 6 6 2.0726 -3.2390 1.2852 7 6 3.5806 -3.3818 1.0666 8 1 3.7639 -3.8862 0.1178 9 7 4.1611 -4.1717 2.1608 10 6 4.0489 -5.6108 1.8882 11 6 4.6530 -6.3869 3.0300 12 6 5.9944 -6.7221 3.0043 13 6 6.5516 -7.4335 4.0504 14 6 5.7703 -7.8075 5.1269 15 6 4.4231 -7.4778 5.1522 16 8 3.6513 -7.8493 6.2072 17 6 4.2916 -8.5828 7.2530 18 6 3.2713 -8.9094 8.3455 19 6 3.9467 -9.6824 9.4488 20 1 4.9984 -9.9176 9.3777 21 6 3.2232 -10.0848 10.5513 22 7 1.9424 -9.7988 10.6376 23 14 4.0621 -11.0363 11.9225 24 1 5.1604 -10.2163 12.4939 25 1 3.0732 -11.3482 12.9856 26 1 4.6199 -12.3005 11.3785 27 6 3.8664 -6.7632 4.1011 28 6 4.2275 -1.9951 1.0399 29 1 4.0236 -1.4804 1.9789 30 6 5.7392 -2.1404 0.8542 31 6 3.6448 -1.1866 -0.1234 32 1 -0.3633 -1.0239 0.0875 33 1 -0.3633 0.5878 0.8430 34 1 -0.3632 0.4363 -0.9305 35 1 1.5683 -3.0123 -0.8002 36 1 0.4108 -2.2548 0.3240 37 1 1.6159 -4.2279 1.3274 38 1 1.8890 -2.7131 2.2221 39 1 3.7326 -3.9363 3.0434 40 1 4.5793 -5.8483 0.9661 41 1 2.9979 -5.8797 1.7824 42 1 6.6078 -6.4269 2.1659 43 1 7.5996 -7.6938 4.0282 44 1 6.2070 -8.3598 5.9458 45 1 5.0974 -7.9834 7.6765 46 1 4.7010 -9.5088 6.8494 47 1 2.4651 -9.5086 7.9223 48 1 2.8621 -7.9831 8.7491 49 1 1.4335 -10.0816 11.4134 50 1 2.8186 -6.5019 4.1204 51 1 5.9422 -2.6539 -0.0856 52 1 6.1994 -1.1525 0.8348 53 1 6.1529 -2.7181 1.6807 54 1 3.9253 -1.6516 -1.0684 55 1 4.0280 -0.1668 -0.0878 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089937570.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:54 Heat of formation + Delta-G solvation = -80.041231 kcal Electronic energy + Delta-G solvation = -31409.096896 eV Core-core repulsion = 27216.667560 eV Total energy + Delta-G solvation = -4192.429336 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 360.220 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.35451 -41.02746 -39.39003 -38.54273 -36.31694 -35.46977 -34.47707 -32.79991 -32.57436 -31.15135 -30.76636 -30.36005 -27.37709 -27.05217 -26.44327 -24.56925 -23.56589 -23.30008 -23.13849 -21.67223 -21.23873 -20.08683 -19.09184 -18.24300 -18.07954 -17.05652 -16.97750 -16.93789 -16.82762 -16.60452 -16.42062 -16.13307 -15.85348 -15.65010 -15.15495 -14.78348 -14.53275 -14.37803 -14.32816 -14.31740 -14.11010 -13.92154 -13.79609 -13.37712 -13.17397 -13.05252 -13.01645 -12.93401 -12.80103 -12.63766 -12.56036 -12.53617 -12.39701 -12.26069 -11.92821 -11.87405 -11.70199 -11.58877 -11.57737 -11.41744 -11.30006 -10.85743 -10.62313 -9.87326 -9.68113 -9.22154 -9.06618 -8.27515 -6.41381 0.36885 0.57247 1.40430 1.44237 1.52253 1.57121 2.03478 2.27153 2.51469 2.77710 3.06782 3.34046 3.58236 3.68972 3.86842 3.91371 3.93915 4.01940 4.10000 4.17857 4.24417 4.25637 4.29148 4.34340 4.39954 4.41963 4.48740 4.57107 4.60009 4.61705 4.71142 4.72398 4.73894 4.77576 4.79239 4.80223 4.84559 5.00555 5.11199 5.14933 5.16603 5.21666 5.30763 5.36701 5.44224 5.45606 5.45666 5.55614 5.60668 5.66456 5.69416 5.92710 6.06855 6.13039 6.37428 6.41743 6.58299 6.73037 7.12978 7.28776 8.85270 Molecular weight = 360.22amu Principal moments of inertia in cm(-1) A = 0.014470 B = 0.001544 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.509601 B =18134.687399 C =19412.642746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.502 3.498 3 O -0.604 6.604 4 N -0.612 5.612 5 C 0.104 3.896 6 C -0.165 4.165 7 C 0.099 3.901 8 H 0.094 0.906 9 N -0.680 5.680 10 C 0.110 3.890 11 C -0.043 4.043 12 C -0.139 4.139 13 C -0.082 4.082 14 C -0.225 4.225 15 C 0.104 3.896 16 O -0.342 6.342 17 C 0.086 3.914 18 C 0.029 3.971 19 C -0.549 4.549 20 H 0.070 0.930 21 C 0.003 3.997 22 N -0.930 5.930 23 Si 0.976 3.024 24 H -0.265 1.265 25 H -0.282 1.282 26 H -0.263 1.263 27 C -0.162 4.162 28 C -0.084 4.084 29 H 0.051 0.949 30 C -0.130 4.130 31 C 0.115 3.885 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.340 0.660 40 H 0.098 0.902 41 H 0.049 0.951 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.122 0.878 45 H 0.057 0.943 46 H 0.058 0.942 47 H -0.001 1.001 48 H -0.002 1.002 49 H 0.267 0.733 50 H 0.125 0.875 51 H 0.062 0.938 52 H 0.044 0.956 53 H 0.065 0.935 54 H 0.084 0.916 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.185 13.712 -28.318 31.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.293 3.707 3 O -0.486 6.486 4 N -0.344 5.344 5 C -0.018 4.018 6 C -0.205 4.205 7 C -0.011 4.011 8 H 0.112 0.888 9 N -0.310 5.310 10 C -0.019 4.019 11 C -0.044 4.044 12 C -0.158 4.158 13 C -0.100 4.100 14 C -0.244 4.244 15 C 0.059 3.941 16 O -0.257 6.257 17 C 0.012 3.988 18 C -0.009 4.009 19 C -0.586 4.586 20 H 0.088 0.912 21 C -0.196 4.196 22 N -0.569 5.569 23 Si 0.799 3.201 24 H -0.189 1.189 25 H -0.207 1.207 26 H -0.188 1.188 27 C -0.181 4.181 28 C -0.104 4.104 29 H 0.069 0.931 30 C -0.188 4.188 31 C -0.008 4.008 32 H 0.128 0.872 33 H 0.113 0.887 34 H 0.124 0.876 35 H 0.109 0.891 36 H 0.130 0.870 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.158 0.842 40 H 0.117 0.883 41 H 0.067 0.933 42 H 0.166 0.834 43 H 0.164 0.836 44 H 0.140 0.860 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.017 0.983 48 H 0.016 0.984 49 H 0.076 0.924 50 H 0.143 0.857 51 H 0.081 0.919 52 H 0.063 0.937 53 H 0.084 0.916 54 H 0.102 0.898 55 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.777 14.294 -28.421 31.934 hybrid contribution -0.692 -0.611 1.631 1.875 sum 2.085 13.683 -26.790 30.154 Atomic orbital electron populations 1.22072 0.88763 1.06503 1.05950 1.21583 0.92277 0.82628 0.74250 1.90689 1.71994 1.33080 1.52869 1.48349 1.07572 1.06869 1.71606 1.22067 0.97623 0.82785 0.99291 1.22676 0.97266 1.01494 0.99069 1.21586 0.90992 0.93213 0.95322 0.88827 1.60557 1.61501 1.03625 1.05275 1.20863 0.99113 0.86514 0.95361 1.19718 0.93722 0.96468 0.94468 1.21172 0.94631 1.00147 0.99823 1.21234 1.00341 0.96075 0.92323 1.21485 0.93380 1.07208 1.02308 1.19523 0.90745 0.95541 0.88315 1.86070 1.39588 1.70482 1.29517 1.22821 0.96379 0.93797 0.85836 1.18959 0.94283 0.95670 0.91941 1.21373 0.96794 1.36234 1.04236 0.91191 1.26033 0.95478 0.96922 1.01189 1.70109 1.08694 1.47197 1.30890 0.85343 0.78135 0.79014 0.77616 1.18926 1.20719 1.18798 1.20451 1.00957 1.03118 0.93615 1.21339 0.96605 0.95030 0.97476 0.93086 1.21575 0.93511 1.01042 1.02693 1.21684 0.79354 1.00994 0.98799 0.87205 0.88670 0.87642 0.89050 0.86970 0.89171 0.92301 0.84204 0.88337 0.93316 0.83410 0.83575 0.85956 0.92484 0.92335 0.98260 0.98371 0.92421 0.85687 0.91907 0.93709 0.91624 0.89777 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.11 71.24 0.72 -0.67 16 2 C 0.50 8.57 7.79 87.66 0.68 9.26 16 3 O -0.60 -16.59 16.52 -3.03 -0.05 -16.64 16 4 N -0.61 -7.74 2.97 -818.90 -2.43 -10.18 16 5 C 0.10 0.61 6.31 86.36 0.54 1.16 16 6 C -0.17 -1.34 5.33 30.68 0.16 -1.17 16 7 C 0.10 0.98 1.89 44.94 0.08 1.07 16 8 H 0.09 0.74 7.80 -2.39 -0.02 0.73 16 9 N -0.68 -9.07 5.42 -495.44 -2.68 -11.76 16 10 C 0.11 1.47 5.61 85.56 0.48 1.95 16 11 C -0.04 -0.89 5.39 -19.88 -0.11 -1.00 16 12 C -0.14 -2.77 9.70 22.28 0.22 -2.56 16 13 C -0.08 -1.89 10.04 22.25 0.22 -1.66 16 14 C -0.22 -6.78 9.04 22.37 0.20 -6.58 16 15 C 0.10 3.56 6.69 22.51 0.15 3.71 16 16 O -0.34 -14.45 10.14 -92.42 -0.94 -15.39 16 17 C 0.09 3.79 4.68 71.98 0.34 4.13 16 18 C 0.03 1.57 5.34 29.85 0.16 1.73 16 19 C -0.55 -31.03 9.11 25.60 0.23 -30.79 16 20 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 21 C 0.00 0.14 5.46 84.65 0.46 0.61 16 22 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 23 Si 0.98 43.34 29.54 68.60 2.03 45.37 16 24 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 25 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 26 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 27 C -0.16 -4.48 9.64 22.36 0.22 -4.26 16 28 C -0.08 -1.10 2.60 -10.72 -0.03 -1.13 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 C -0.13 -1.67 9.03 71.98 0.65 -1.02 16 31 C 0.11 1.57 5.73 86.36 0.49 2.07 16 32 H 0.11 0.23 5.14 -2.39 -0.01 0.22 16 33 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.11 0.65 8.14 -2.39 -0.02 0.64 16 35 H 0.09 0.26 8.14 -2.38 -0.02 0.24 16 36 H 0.11 0.24 5.14 -2.39 -0.01 0.23 16 37 H 0.09 0.58 7.43 -2.39 -0.02 0.56 16 38 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.34 5.40 8.47 -89.70 -0.76 4.64 16 40 H 0.10 1.03 8.00 -2.39 -0.02 1.01 16 41 H 0.05 0.59 7.36 -2.39 -0.02 0.57 16 42 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 43 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 44 H 0.12 3.74 6.30 -2.91 -0.02 3.72 16 45 H 0.06 2.39 7.65 -2.39 -0.02 2.37 16 46 H 0.06 2.43 7.67 -2.39 -0.02 2.41 16 47 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 48 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 49 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 50 H 0.13 3.29 8.06 -2.91 -0.02 3.26 16 51 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 52 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 53 H 0.06 1.01 7.57 -2.39 -0.02 0.99 16 54 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 55 H 0.07 1.31 7.00 -2.39 -0.02 1.29 16 Total: -1.00 -74.91 435.82 2.21 -72.71 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.12 Total: 17.19 kcal Atomic # 6 Polarization: -31.05 SS G_CDS: 5.88 Total: -25.16 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -4.83 Total: -78.07 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -0.99 Total: -32.03 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -74.91 2.21 -72.71 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089937570.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.336 kcal (2) G-P(sol) polarization free energy of solvation -74.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds