Wall clock time and date at job start Tue Mar 31 2020 06:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21279 * 119.99793 * 2 1 4 4 N 1.34774 * 120.00047 * 180.02562 * 2 1 3 5 5 C 1.46926 * 120.63143 * 174.55143 * 4 2 1 6 6 C 1.53191 * 108.77657 * 126.36797 * 5 4 2 7 7 C 1.53037 * 109.31421 * 54.63357 * 6 5 4 8 8 H 1.09007 * 109.46401 * 58.64237 * 7 6 5 9 9 N 1.46898 * 109.46088 * 178.61529 * 7 6 5 10 10 C 1.46900 * 110.99810 * 274.99727 * 9 7 6 11 11 C 1.50706 * 109.47243 * 179.97438 * 10 9 7 12 12 C 1.38286 * 119.96986 * 269.98359 * 11 10 9 13 13 C 1.38246 * 120.10826 * 179.77076 * 12 11 10 14 14 C 1.38169 * 120.05454 * 0.49930 * 13 12 11 15 15 C 1.38704 * 119.94126 * 359.50065 * 14 13 12 16 16 O 1.35910 * 120.05103 * 180.27640 * 15 14 13 17 17 C 1.42897 * 117.00224 * 359.97438 * 16 15 14 18 18 C 1.52995 * 109.47368 * 180.02562 * 17 16 15 19 19 C 1.50696 * 109.47540 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99569 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00449 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99728 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00346 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47180 * 60.00020 * 23 21 19 25 25 H 1.48500 * 109.47209 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.46993 * 300.00174 * 23 21 19 27 27 C 1.38125 * 119.97192 * 89.99987 * 11 10 9 28 28 C 1.53042 * 109.53718 * 298.63445 * 7 6 5 29 29 H 1.09002 * 109.49919 * 301.41483 * 28 7 6 30 30 C 1.53008 * 109.49617 * 181.31690 * 28 7 6 31 31 C 1.46926 * 120.63016 * 354.52210 * 4 2 1 32 32 H 1.09002 * 109.47086 * 274.66180 * 1 2 3 33 33 H 1.09002 * 109.47442 * 34.65925 * 1 2 3 34 34 H 1.08995 * 109.47328 * 154.66616 * 1 2 3 35 35 H 1.08992 * 109.58757 * 6.57458 * 5 4 2 36 36 H 1.08999 * 109.58057 * 246.15688 * 5 4 2 37 37 H 1.09001 * 109.49800 * 294.68290 * 6 5 4 38 38 H 1.09001 * 109.52318 * 174.59818 * 6 5 4 39 39 H 1.00900 * 111.00367 * 151.04457 * 9 7 6 40 40 H 1.09003 * 109.47215 * 60.00196 * 10 9 7 41 41 H 1.09002 * 109.47607 * 300.00069 * 10 9 7 42 42 H 1.08002 * 119.94689 * 0.02562 * 12 11 10 43 43 H 1.08000 * 119.97244 * 180.25291 * 13 12 11 44 44 H 1.08002 * 120.02467 * 179.77114 * 14 13 12 45 45 H 1.08995 * 109.47061 * 300.00830 * 17 16 15 46 46 H 1.09004 * 109.46629 * 60.00665 * 17 16 15 47 47 H 1.08998 * 109.47419 * 300.00868 * 18 17 16 48 48 H 1.09012 * 109.46878 * 60.00072 * 18 17 16 49 49 H 0.96993 * 120.00244 * 179.97438 * 22 21 19 50 50 H 1.07998 * 120.02342 * 0.02562 * 27 11 10 51 51 H 1.08997 * 109.46813 * 60.00306 * 30 28 7 52 52 H 1.09004 * 109.46628 * 179.97438 * 30 28 7 53 53 H 1.09000 * 109.46829 * 300.00059 * 30 28 7 54 54 H 1.09006 * 109.58543 * 353.42237 * 31 4 2 55 55 H 1.08999 * 109.58530 * 113.69883 * 31 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6451 -1.1862 -0.1206 6 6 4.2248 -1.9966 1.0430 7 6 3.5780 -3.3834 1.0657 8 1 3.7636 -3.8863 0.1166 9 7 4.1556 -4.1749 2.1601 10 6 5.3994 -4.8312 1.7356 11 6 5.9617 -5.6316 2.8820 12 6 6.8466 -5.0431 3.7669 13 6 7.3606 -5.7733 4.8223 14 6 6.9990 -7.0963 4.9895 15 6 6.1116 -7.6888 4.1033 16 8 5.7501 -8.9884 4.2689 17 6 6.3231 -9.6850 5.3772 18 6 5.8027 -11.1236 5.3996 19 6 6.4075 -11.8585 6.5680 20 1 7.0940 -11.3501 7.2288 21 6 6.0844 -13.1798 6.7934 22 7 5.2488 -13.7989 5.9884 23 14 6.8335 -14.0905 8.2421 24 1 6.4545 -13.4079 9.5054 25 1 6.3294 -15.4871 8.2630 26 1 8.3125 -14.1004 8.1093 27 6 5.5931 -6.9524 3.0478 28 6 2.0694 -3.2411 1.2805 29 1 1.8832 -2.7162 2.2175 30 6 1.4283 -4.6292 1.3358 31 6 1.4653 -2.4448 0.1196 32 1 -0.3633 0.0835 1.0243 33 1 -0.3634 0.8453 -0.5844 34 1 -0.3634 -0.9288 -0.4397 35 1 4.0281 -0.1665 -0.0823 36 1 3.9282 -1.6497 -1.0656 37 1 4.0183 -1.4835 1.9822 38 1 5.3022 -2.0998 0.9139 39 1 3.4912 -4.8499 2.5080 40 1 6.1234 -4.0754 1.4310 41 1 5.1919 -5.4948 0.8960 42 1 7.1335 -4.0102 3.6356 43 1 8.0483 -5.3103 5.5144 44 1 7.4037 -7.6673 5.8120 45 1 7.4086 -9.6931 5.2793 46 1 6.0455 -9.1835 6.3043 47 1 4.7171 -11.1159 5.4971 48 1 6.0805 -11.6249 4.4723 49 1 5.0217 -14.7285 6.1467 50 1 4.9025 -7.4116 2.3561 51 1 1.8605 -5.1964 2.1602 52 1 0.3539 -4.5273 1.4893 53 1 1.6138 -5.1527 0.3979 54 1 0.4100 -2.2554 0.3164 55 1 1.5685 -3.0098 -0.8068 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089937572.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:59 Heat of formation + Delta-G solvation = -81.689549 kcal Electronic energy + Delta-G solvation = -31387.214897 eV Core-core repulsion = 27194.714085 eV Total energy + Delta-G solvation = -4192.500813 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 360.220 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.35598 -41.04079 -39.44434 -38.57032 -36.35359 -35.46514 -34.05972 -33.35355 -32.58200 -31.52451 -30.56223 -29.88029 -27.68268 -27.18783 -26.54921 -24.61045 -23.52818 -23.34353 -22.93502 -21.55836 -21.28386 -20.04391 -19.12608 -18.22201 -18.05062 -17.19449 -16.96908 -16.94305 -16.87461 -16.62846 -16.47526 -16.27172 -16.03134 -15.42458 -15.11629 -14.77158 -14.49008 -14.39842 -14.35184 -14.32643 -14.14879 -13.90187 -13.75873 -13.50982 -13.25620 -13.07110 -13.02406 -12.98301 -12.87455 -12.72899 -12.57816 -12.56293 -12.48913 -12.15690 -11.97712 -11.87576 -11.62628 -11.59467 -11.56758 -11.39559 -11.34098 -10.82245 -10.61705 -9.87345 -9.68485 -9.34438 -9.08918 -8.26956 -6.40785 0.34203 0.54695 1.40925 1.44599 1.52629 1.58557 2.03712 2.26781 2.50921 2.75092 3.07400 3.30123 3.60246 3.63377 3.80187 3.90579 3.91857 3.98863 4.13685 4.21545 4.23185 4.25973 4.29997 4.35254 4.38151 4.42346 4.45669 4.50561 4.57203 4.58751 4.61176 4.71204 4.72225 4.73618 4.79781 4.80816 4.89743 4.91939 5.00762 5.11018 5.12064 5.19819 5.29743 5.31043 5.40610 5.43184 5.46209 5.52806 5.53336 5.65113 5.68166 5.90309 6.06710 6.09576 6.40092 6.41725 6.56992 6.73529 7.13979 7.29374 8.85775 Molecular weight = 360.22amu Principal moments of inertia in cm(-1) A = 0.020390 B = 0.001461 C = 0.001392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.887387 B =19159.975472 C =20107.158915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.503 3.497 3 O -0.603 6.603 4 N -0.612 5.612 5 C 0.109 3.891 6 C -0.113 4.113 7 C 0.095 3.905 8 H 0.055 0.945 9 N -0.688 5.688 10 C 0.108 3.892 11 C -0.044 4.044 12 C -0.141 4.141 13 C -0.081 4.081 14 C -0.223 4.223 15 C 0.106 3.894 16 O -0.341 6.341 17 C 0.085 3.915 18 C 0.029 3.971 19 C -0.549 4.549 20 H 0.070 0.930 21 C 0.004 3.996 22 N -0.929 5.929 23 Si 0.975 3.025 24 H -0.264 1.264 25 H -0.282 1.282 26 H -0.264 1.264 27 C -0.162 4.162 28 C -0.103 4.103 29 H 0.072 0.928 30 C -0.151 4.151 31 C 0.111 3.889 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.345 0.655 40 H 0.094 0.906 41 H 0.046 0.954 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.125 0.875 45 H 0.058 0.942 46 H 0.058 0.942 47 H -0.001 1.001 48 H -0.002 1.002 49 H 0.267 0.733 50 H 0.126 0.874 51 H 0.052 0.948 52 H 0.076 0.924 53 H 0.064 0.936 54 H 0.115 0.885 55 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.539 26.522 -13.959 30.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.294 3.706 3 O -0.485 6.485 4 N -0.344 5.344 5 C -0.014 4.014 6 C -0.152 4.152 7 C -0.015 4.015 8 H 0.073 0.927 9 N -0.322 5.322 10 C -0.021 4.021 11 C -0.045 4.045 12 C -0.160 4.160 13 C -0.098 4.098 14 C -0.242 4.242 15 C 0.061 3.939 16 O -0.255 6.255 17 C 0.011 3.989 18 C -0.008 4.008 19 C -0.587 4.587 20 H 0.088 0.912 21 C -0.195 4.195 22 N -0.568 5.568 23 Si 0.798 3.202 24 H -0.189 1.189 25 H -0.207 1.207 26 H -0.189 1.189 27 C -0.181 4.181 28 C -0.122 4.122 29 H 0.091 0.909 30 C -0.209 4.209 31 C -0.011 4.011 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.128 0.872 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.167 0.833 40 H 0.112 0.888 41 H 0.064 0.936 42 H 0.163 0.837 43 H 0.165 0.835 44 H 0.143 0.857 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.017 0.983 48 H 0.017 0.983 49 H 0.076 0.924 50 H 0.144 0.856 51 H 0.071 0.929 52 H 0.095 0.905 53 H 0.083 0.917 54 H 0.133 0.867 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.135 27.297 -13.835 31.424 hybrid contribution 0.207 -1.675 0.441 1.745 sum -6.928 25.622 -13.394 29.730 Atomic orbital electron populations 1.22004 0.88601 1.06278 1.06067 1.21603 0.92311 0.82503 0.74176 1.90689 1.72061 1.33011 1.52763 1.48312 1.07524 1.06788 1.71786 1.21602 0.79706 1.01204 0.98867 1.21823 1.00604 0.94869 0.97916 1.21536 0.93445 0.93674 0.92808 0.92677 1.60539 1.06957 1.29468 1.35218 1.20874 0.92767 0.95922 0.92500 1.19686 0.96028 0.91771 0.96989 1.21154 0.98888 1.00738 0.95186 1.21230 0.98444 0.92381 0.97787 1.21489 1.02734 0.98097 1.01897 1.19490 0.94932 0.83763 0.95706 1.86076 1.67514 1.21945 1.49995 1.22836 0.96994 0.92769 0.86295 1.18953 0.95846 0.89408 0.96602 1.21372 1.28104 0.97034 1.12178 0.91215 1.26016 0.95283 0.98454 0.99756 1.70107 1.35219 1.12065 1.39446 0.85353 0.78943 0.77156 0.78711 1.18883 1.20703 1.18901 1.20433 1.04437 0.94612 0.98652 1.21599 0.93913 0.97306 0.99421 0.90934 1.21840 1.01866 0.94918 1.02263 1.22078 0.97695 0.82627 0.98736 0.87538 0.88811 0.87211 0.90936 0.90084 0.92650 0.90153 0.83305 0.88770 0.93610 0.83723 0.83503 0.85744 0.92377 0.92364 0.98263 0.98310 0.92434 0.85599 0.92891 0.90472 0.91704 0.86714 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 9.47 71.24 0.67 -0.48 16 2 C 0.50 8.12 7.80 87.66 0.68 8.81 16 3 O -0.60 -15.93 16.52 -3.03 -0.05 -15.98 16 4 N -0.61 -7.51 2.97 -818.92 -2.43 -9.94 16 5 C 0.11 1.46 6.44 86.36 0.56 2.01 16 6 C -0.11 -1.46 5.59 30.67 0.17 -1.29 16 7 C 0.09 1.08 1.95 44.94 0.09 1.16 16 8 H 0.06 0.58 7.80 -2.38 -0.02 0.56 16 9 N -0.69 -10.35 6.30 -495.42 -3.12 -13.47 16 10 C 0.11 1.71 5.61 85.56 0.48 2.19 16 11 C -0.04 -0.98 5.39 -19.88 -0.11 -1.09 16 12 C -0.14 -3.02 9.70 22.28 0.22 -2.80 16 13 C -0.08 -1.92 10.04 22.26 0.22 -1.70 16 14 C -0.22 -6.80 9.04 22.36 0.20 -6.60 16 15 C 0.11 3.68 6.69 22.50 0.15 3.83 16 16 O -0.34 -14.38 10.14 -92.54 -0.94 -15.32 16 17 C 0.09 3.75 4.68 71.98 0.34 4.09 16 18 C 0.03 1.59 5.34 29.84 0.16 1.75 16 19 C -0.55 -30.96 9.11 25.60 0.23 -30.73 16 20 H 0.07 3.67 7.74 -2.91 -0.02 3.64 16 21 C 0.00 0.21 5.46 84.65 0.46 0.67 16 22 N -0.93 -56.15 13.29 21.45 0.28 -55.86 16 23 Si 0.98 43.20 29.54 68.60 2.03 45.22 16 24 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 25 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 26 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 27 C -0.16 -4.60 9.64 22.36 0.22 -4.39 16 28 C -0.10 -0.92 2.55 -10.71 -0.03 -0.95 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 30 C -0.15 -1.20 8.94 71.98 0.64 -0.55 16 31 C 0.11 0.68 5.43 86.36 0.47 1.15 16 32 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.11 0.11 6.20 -2.39 -0.01 0.09 16 35 H 0.07 1.31 7.00 -2.39 -0.02 1.29 16 36 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.08 0.95 7.42 -2.39 -0.02 0.94 16 39 H 0.35 5.55 6.08 -89.69 -0.55 5.00 16 40 H 0.09 1.27 7.36 -2.39 -0.02 1.26 16 41 H 0.05 0.69 8.00 -2.39 -0.02 0.67 16 42 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 43 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 44 H 0.12 3.81 6.30 -2.91 -0.02 3.79 16 45 H 0.06 2.41 7.66 -2.39 -0.02 2.40 16 46 H 0.06 2.42 7.66 -2.39 -0.02 2.40 16 47 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 48 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 49 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 50 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 51 H 0.05 0.58 6.17 -2.39 -0.01 0.57 16 52 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 53 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 54 H 0.11 0.20 5.63 -2.38 -0.01 0.18 16 55 H 0.09 0.34 8.14 -2.39 -0.02 0.33 16 Total: -1.00 -74.45 433.85 1.93 -72.52 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.33 Total: 17.74 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: 5.83 Total: -24.90 kcal Atomic # 7 Polarization: -74.01 SS G_CDS: -5.27 Total: -79.28 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -0.99 Total: -31.30 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -74.45 1.93 -72.52 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089937572.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.173 kcal (2) G-P(sol) polarization free energy of solvation -74.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds