Wall clock time and date at job start Tue Mar 31 2020 07:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21282 * 119.99568 * 2 1 4 4 N 1.34773 * 119.99932 * 179.97438 * 2 1 3 5 5 C 1.46928 * 120.62695 * 174.41303 * 4 2 1 6 6 C 1.53201 * 108.76164 * 126.36502 * 5 4 2 7 7 C 1.53033 * 109.31076 * 54.65284 * 6 5 4 8 8 H 1.09000 * 109.46037 * 58.62966 * 7 6 5 9 9 N 1.46909 * 109.45940 * 178.60217 * 7 6 5 10 10 C 1.46898 * 110.99716 * 275.02848 * 9 7 6 11 11 C 1.50697 * 109.46937 * 179.97438 * 10 9 7 12 12 C 1.38284 * 119.97690 * 270.02072 * 11 10 9 13 13 C 1.38243 * 120.11578 * 179.97438 * 12 11 10 14 14 C 1.38169 * 120.05242 * 0.02562 * 13 12 11 15 15 C 1.38706 * 119.94672 * 0.02562 * 14 13 12 16 16 O 1.35900 * 120.05676 * 179.97438 * 15 14 13 17 17 C 1.42899 * 117.00018 * 0.02562 * 16 15 14 18 18 C 1.52997 * 109.46976 * 179.97438 * 17 16 15 19 19 C 1.50704 * 109.46800 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99906 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99759 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00196 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99765 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47450 * 90.00025 * 23 21 19 25 25 H 1.48504 * 109.46813 * 209.99774 * 23 21 19 26 26 H 1.48500 * 109.47230 * 329.99588 * 23 21 19 27 27 C 1.38123 * 119.97136 * 90.00428 * 11 10 9 28 28 C 1.53042 * 109.53147 * 298.61320 * 7 6 5 29 29 H 1.08999 * 109.50164 * 181.32458 * 28 7 6 30 30 C 1.52993 * 109.49884 * 301.42395 * 28 7 6 31 31 C 1.46925 * 120.62941 * 354.39563 * 4 2 1 32 32 H 1.08993 * 109.46752 * 184.87503 * 1 2 3 33 33 H 1.08999 * 109.46934 * 304.88112 * 1 2 3 34 34 H 1.09002 * 109.46860 * 64.87864 * 1 2 3 35 35 H 1.08995 * 109.58607 * 246.15565 * 5 4 2 36 36 H 1.09002 * 109.58600 * 6.44345 * 5 4 2 37 37 H 1.09001 * 109.50366 * 294.70017 * 6 5 4 38 38 H 1.08997 * 109.48367 * 174.59778 * 6 5 4 39 39 H 1.00897 * 111.00189 * 151.07368 * 9 7 6 40 40 H 1.09006 * 109.47272 * 59.99621 * 10 9 7 41 41 H 1.09002 * 109.47683 * 299.99820 * 10 9 7 42 42 H 1.08008 * 119.94142 * 0.02562 * 12 11 10 43 43 H 1.08003 * 119.97117 * 180.27768 * 13 12 11 44 44 H 1.07998 * 120.02560 * 180.02562 * 14 13 12 45 45 H 1.09005 * 109.46739 * 299.99945 * 17 16 15 46 46 H 1.08995 * 109.47111 * 59.99334 * 17 16 15 47 47 H 1.08998 * 109.46914 * 299.99194 * 18 17 16 48 48 H 1.09000 * 109.47026 * 59.99975 * 18 17 16 49 49 H 0.96993 * 119.99764 * 180.02562 * 22 21 19 50 50 H 1.08004 * 120.02779 * 359.97438 * 27 11 10 51 51 H 1.09000 * 109.47317 * 59.99411 * 30 28 7 52 52 H 1.09000 * 109.47654 * 179.97438 * 30 28 7 53 53 H 1.08999 * 109.47284 * 300.00153 * 30 28 7 54 54 H 1.09005 * 109.58665 * 113.84462 * 31 4 2 55 55 H 1.08994 * 109.58873 * 353.41318 * 31 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6449 -1.1863 -0.1226 6 6 4.2268 -1.9944 1.0417 7 6 3.5802 -3.3812 1.0683 8 1 3.7641 -3.8858 0.1198 9 7 4.1600 -4.1706 2.1632 10 6 5.4035 -4.8269 1.7378 11 6 5.9681 -5.6249 2.8846 12 6 6.8534 -5.0344 3.7676 13 6 7.3727 -5.7637 4.8210 14 6 7.0083 -7.0852 4.9938 15 6 6.1213 -7.6803 4.1089 16 8 5.7618 -8.9801 4.2764 17 6 6.3356 -9.6741 5.3859 18 6 5.8165 -11.1131 5.4111 19 6 6.4222 -11.8452 6.5809 20 1 7.1084 -11.3349 7.2406 21 6 6.0995 -13.1660 6.8095 22 7 5.2628 -13.7869 6.0070 23 14 6.8498 -14.0732 8.2599 24 1 5.9763 -13.9122 9.4500 25 1 6.9758 -15.5156 7.9299 26 1 8.1936 -13.5131 8.5527 27 6 5.6005 -6.9456 3.0532 28 6 2.0721 -3.2385 1.2859 29 1 1.6154 -4.2273 1.3282 30 6 1.8134 -2.4991 2.6001 31 6 1.4655 -2.4445 0.1246 32 1 -0.3632 -1.0239 0.0873 33 1 -0.3633 0.5877 0.8430 34 1 -0.3633 0.4363 -0.9305 35 1 3.9261 -1.6518 -1.0671 36 1 4.0278 -0.1663 -0.0895 37 1 4.0219 -1.4794 1.9804 38 1 5.3038 -2.0975 0.9103 39 1 3.4965 -4.8453 2.5133 40 1 6.1266 -4.0712 1.4307 41 1 5.1951 -5.4920 0.8997 42 1 7.1391 -4.0013 3.6345 43 1 8.0605 -5.2988 5.5118 44 1 7.4139 -7.6544 5.8171 45 1 7.4213 -9.6807 5.2882 46 1 6.0573 -9.1715 6.3122 47 1 4.7310 -11.1061 5.5091 48 1 6.0946 -11.6159 4.4848 49 1 5.0355 -14.7160 6.1681 50 1 4.9084 -7.4063 2.3638 51 1 2.2692 -1.5100 2.5563 52 1 0.7392 -2.3973 2.7544 53 1 2.2476 -3.0629 3.4257 54 1 1.5691 -3.0126 -0.8000 55 1 0.4108 -2.2548 0.3232 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089937574.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:04 Heat of formation + Delta-G solvation = -75.714354 kcal Electronic energy + Delta-G solvation = -31472.019356 eV Core-core repulsion = 27279.777647 eV Total energy + Delta-G solvation = -4192.241709 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 360.220 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.44446 -41.04375 -39.40276 -38.58803 -36.32589 -35.46308 -33.82323 -33.18387 -32.58022 -31.53372 -30.54700 -29.87098 -27.77475 -27.18054 -26.53445 -24.62007 -23.79302 -23.36605 -23.18933 -21.51662 -21.18673 -19.47214 -19.02246 -18.26727 -18.09728 -17.10826 -16.94184 -16.90921 -16.82659 -16.61491 -16.50093 -16.11287 -16.02249 -15.64000 -15.26156 -14.78814 -14.58516 -14.41154 -14.34561 -14.33369 -14.25566 -13.91691 -13.82787 -13.40225 -13.13951 -13.02733 -12.99361 -12.95028 -12.75080 -12.61448 -12.56045 -12.51752 -12.41073 -12.16795 -12.11999 -11.84576 -11.59742 -11.57619 -11.42322 -11.34044 -11.33663 -10.77351 -10.62513 -9.86684 -9.64088 -9.31282 -9.08115 -8.27320 -6.41003 0.35264 0.55525 1.40864 1.42810 1.53971 1.61226 2.06707 2.26926 2.51109 2.76062 3.07184 3.31345 3.61125 3.63900 3.83403 3.92132 3.96011 4.04928 4.14977 4.22976 4.23710 4.25406 4.26053 4.31621 4.36694 4.45243 4.50099 4.53747 4.59103 4.62510 4.67169 4.71833 4.73159 4.77659 4.80320 4.82286 4.88762 4.98297 5.08768 5.13010 5.15037 5.23325 5.31200 5.33223 5.43995 5.46245 5.47602 5.53843 5.60161 5.65838 5.68525 5.91041 6.06882 6.10596 6.42902 6.43271 6.57572 6.73572 7.16780 7.29230 8.85657 Molecular weight = 360.22amu Principal moments of inertia in cm(-1) A = 0.021183 B = 0.001441 C = 0.001387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.467463 B =19420.110766 C =20179.645853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.504 3.496 3 O -0.605 6.605 4 N -0.606 5.606 5 C 0.110 3.890 6 C -0.115 4.115 7 C 0.096 3.904 8 H 0.055 0.945 9 N -0.682 5.682 10 C 0.108 3.892 11 C -0.043 4.043 12 C -0.141 4.141 13 C -0.081 4.081 14 C -0.224 4.224 15 C 0.106 3.894 16 O -0.341 6.341 17 C 0.086 3.914 18 C 0.029 3.971 19 C -0.548 4.548 20 H 0.070 0.930 21 C 0.003 3.997 22 N -0.930 5.930 23 Si 0.975 3.025 24 H -0.270 1.270 25 H -0.281 1.281 26 H -0.260 1.260 27 C -0.161 4.161 28 C -0.106 4.106 29 H 0.097 0.903 30 C -0.137 4.137 31 C 0.106 3.894 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.345 0.655 40 H 0.093 0.907 41 H 0.046 0.954 42 H 0.144 0.856 43 H 0.146 0.854 44 H 0.124 0.876 45 H 0.058 0.942 46 H 0.058 0.942 47 H -0.001 1.001 48 H -0.001 1.001 49 H 0.267 0.733 50 H 0.126 0.874 51 H 0.040 0.960 52 H 0.061 0.939 53 H 0.054 0.946 54 H 0.088 0.912 55 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.450 26.944 -13.730 31.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.295 3.705 3 O -0.487 6.487 4 N -0.339 5.339 5 C -0.013 4.013 6 C -0.154 4.154 7 C -0.014 4.014 8 H 0.073 0.927 9 N -0.314 5.314 10 C -0.020 4.020 11 C -0.043 4.043 12 C -0.159 4.159 13 C -0.099 4.099 14 C -0.243 4.243 15 C 0.061 3.939 16 O -0.255 6.255 17 C 0.011 3.989 18 C -0.008 4.008 19 C -0.586 4.586 20 H 0.088 0.912 21 C -0.195 4.195 22 N -0.569 5.569 23 Si 0.799 3.201 24 H -0.195 1.195 25 H -0.206 1.206 26 H -0.184 1.184 27 C -0.181 4.181 28 C -0.125 4.125 29 H 0.116 0.884 30 C -0.194 4.194 31 C -0.016 4.016 32 H 0.128 0.872 33 H 0.115 0.885 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.164 0.836 40 H 0.111 0.889 41 H 0.064 0.936 42 H 0.162 0.838 43 H 0.164 0.836 44 H 0.142 0.858 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.018 0.982 48 H 0.017 0.983 49 H 0.076 0.924 50 H 0.144 0.856 51 H 0.059 0.941 52 H 0.080 0.920 53 H 0.073 0.927 54 H 0.106 0.894 55 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.035 27.722 -13.607 31.673 hybrid contribution 0.210 -1.652 0.417 1.717 sum -6.825 26.070 -13.190 30.003 Atomic orbital electron populations 1.22073 0.88855 1.06481 1.05912 1.21531 0.92204 0.82562 0.74200 1.90689 1.71996 1.33046 1.52963 1.48255 1.07422 1.06752 1.71459 1.21583 0.79758 1.01127 0.98842 1.21856 1.00311 0.95099 0.98142 1.21501 0.93484 0.93677 0.92704 0.92679 1.60489 1.06720 1.29157 1.35018 1.20868 0.92826 0.95878 0.92430 1.19678 0.95974 0.91725 0.96938 1.21145 0.98868 1.00678 0.95258 1.21222 0.98451 0.92409 0.97817 1.21481 1.02755 0.98124 1.01900 1.19499 0.94972 0.83742 0.95724 1.86074 1.67583 1.21981 1.49903 1.22832 0.96960 0.92816 0.86268 1.18959 0.95856 0.89422 0.96608 1.21405 1.28047 0.97050 1.12089 0.91223 1.26017 0.95312 0.98442 0.99763 1.70114 1.35244 1.12059 1.39445 0.85297 0.79149 0.77333 0.78362 1.19545 1.20602 1.18410 1.20440 1.04369 0.94635 0.98616 1.21693 0.94603 1.00488 0.95746 0.88449 1.21718 1.01218 0.99786 0.96712 1.22169 0.97821 0.82885 0.98711 0.87231 0.88541 0.87807 0.90202 0.91114 0.92130 0.90510 0.83581 0.88902 0.93596 0.83792 0.83595 0.85826 0.92405 0.92378 0.98250 0.98290 0.92435 0.85555 0.94059 0.92025 0.92687 0.89402 0.86548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 10.11 71.24 0.72 -0.48 16 2 C 0.50 8.03 7.79 87.66 0.68 8.72 16 3 O -0.60 -15.89 16.52 -3.04 -0.05 -15.94 16 4 N -0.61 -7.15 2.41 -818.87 -1.97 -9.12 16 5 C 0.11 1.43 6.44 86.37 0.56 1.99 16 6 C -0.12 -1.43 5.25 30.67 0.16 -1.27 16 7 C 0.10 1.00 2.15 44.94 0.10 1.10 16 8 H 0.06 0.52 7.80 -2.39 -0.02 0.50 16 9 N -0.68 -9.49 5.61 -495.43 -2.78 -12.27 16 10 C 0.11 1.65 5.61 85.56 0.48 2.13 16 11 C -0.04 -0.93 5.39 -19.88 -0.11 -1.03 16 12 C -0.14 -2.98 9.70 22.28 0.22 -2.76 16 13 C -0.08 -1.93 10.04 22.25 0.22 -1.70 16 14 C -0.22 -6.80 9.04 22.37 0.20 -6.60 16 15 C 0.11 3.64 6.69 22.51 0.15 3.79 16 16 O -0.34 -14.36 10.14 -92.43 -0.94 -15.30 16 17 C 0.09 3.76 4.68 71.98 0.34 4.10 16 18 C 0.03 1.57 5.34 29.85 0.16 1.73 16 19 C -0.55 -30.91 9.11 25.60 0.23 -30.68 16 20 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 21 C 0.00 0.19 5.46 84.65 0.46 0.65 16 22 N -0.93 -56.16 13.29 21.45 0.28 -55.87 16 23 Si 0.98 43.24 29.54 68.60 2.03 45.26 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 25 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 26 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 27 C -0.16 -4.52 9.64 22.37 0.22 -4.31 16 28 C -0.11 -0.84 2.59 -10.72 -0.03 -0.87 16 29 H 0.10 0.60 8.10 -2.39 -0.02 0.58 16 30 C -0.14 -1.55 8.56 71.98 0.62 -0.93 16 31 C 0.11 0.59 5.70 86.36 0.49 1.08 16 32 H 0.11 0.12 5.14 -2.39 -0.01 0.11 16 33 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 1.27 7.00 -2.39 -0.02 1.25 16 37 H 0.06 1.00 6.33 -2.39 -0.02 0.99 16 38 H 0.08 0.90 7.42 -2.39 -0.02 0.88 16 39 H 0.34 5.09 8.25 -89.70 -0.74 4.35 16 40 H 0.09 1.22 7.36 -2.38 -0.02 1.20 16 41 H 0.05 0.66 8.00 -2.39 -0.02 0.64 16 42 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 43 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 44 H 0.12 3.79 6.30 -2.91 -0.02 3.77 16 45 H 0.06 2.41 7.66 -2.38 -0.02 2.39 16 46 H 0.06 2.41 7.66 -2.39 -0.02 2.40 16 47 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 48 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 49 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 50 H 0.13 3.36 8.06 -2.91 -0.02 3.33 16 51 H 0.04 0.62 5.97 -2.39 -0.01 0.61 16 52 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 53 H 0.05 0.78 7.58 -2.39 -0.02 0.77 16 54 H 0.09 0.28 8.14 -2.38 -0.02 0.26 16 55 H 0.12 0.16 5.14 -2.39 -0.01 0.15 16 Total: -1.00 -74.33 431.03 2.59 -71.74 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.15 Total: 16.85 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: 5.87 Total: -25.35 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -4.47 Total: -77.26 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.99 Total: -31.24 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -74.33 2.59 -71.74 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089937574.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.974 kcal (2) G-P(sol) polarization free energy of solvation -74.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds