Wall clock time and date at job start Tue Mar 31 2020 06:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35958 * 116.99637 * 2 1 4 4 C 1.38076 * 120.00068 * 359.97438 * 3 2 1 5 5 C 1.39975 * 119.83639 * 179.72636 * 4 3 2 6 6 C 1.46971 * 120.07875 * 180.23520 * 5 4 3 7 7 C 1.35018 * 119.99887 * 180.02562 * 6 5 4 8 8 C 1.46265 * 119.99720 * 179.97438 * 7 6 5 9 9 O 1.21720 * 119.99726 * 5.29232 * 8 7 6 10 10 N 1.34771 * 119.99679 * 185.28756 * 8 7 6 11 11 C 1.47080 * 120.88514 * 354.43352 * 10 8 7 12 12 C 1.53243 * 108.52067 * 128.81416 * 11 10 8 13 13 N 1.46898 * 109.33765 * 53.83446 * 12 11 10 14 14 C 1.46905 * 111.00217 * 172.74588 * 13 12 11 15 15 C 1.46906 * 111.27173 * 296.89188 * 13 12 11 16 16 C 1.47084 * 120.87834 * 174.15540 * 10 8 7 17 17 H 1.08996 * 109.62765 * 111.47353 * 16 10 8 18 18 C 1.52997 * 109.63005 * 350.89534 * 16 10 8 19 19 C 1.40024 * 119.84674 * 0.25578 * 5 4 3 20 20 C 1.37653 * 119.99575 * 359.97438 * 19 5 4 21 21 C 1.39052 * 120.16163 * 0.02562 * 20 19 5 22 22 O 1.35619 * 119.91978 * 180.02562 * 21 20 19 23 23 C 1.34764 * 116.99746 * 354.17306 * 22 21 20 24 24 H 1.07997 * 120.00291 * 5.08313 * 23 22 21 25 25 C 1.38710 * 119.99548 * 185.08036 * 23 22 21 26 26 N 1.31521 * 120.00278 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 119.99869 * 179.97438 * 25 23 22 28 28 H 1.48508 * 109.46944 * 60.00547 * 27 25 23 29 29 H 1.48498 * 109.47222 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47189 * 300.00699 * 27 25 23 31 31 H 1.09002 * 109.47539 * 299.99879 * 1 2 3 32 32 H 1.08994 * 109.47059 * 60.00267 * 1 2 3 33 33 H 1.09006 * 109.46674 * 179.97438 * 1 2 3 34 34 H 1.07999 * 120.08139 * 0.02562 * 4 3 2 35 35 H 1.08003 * 119.99697 * 359.97438 * 6 5 4 36 36 H 1.08003 * 120.00379 * 359.97438 * 7 6 5 37 37 H 1.08994 * 109.62926 * 248.52165 * 11 10 8 38 38 H 1.08995 * 109.62965 * 9.11046 * 11 10 8 39 39 H 1.08995 * 109.49042 * 173.78838 * 12 11 10 40 40 H 1.09000 * 109.49774 * 293.87322 * 12 11 10 41 41 H 1.08997 * 109.46911 * 63.95001 * 14 13 12 42 42 H 1.09000 * 109.47033 * 183.95225 * 14 13 12 43 43 H 1.08997 * 109.46877 * 303.95478 * 14 13 12 44 44 H 1.08997 * 109.49722 * 183.06664 * 15 13 12 45 45 H 1.09006 * 109.48972 * 303.12371 * 15 13 12 46 46 H 1.09002 * 109.47256 * 68.26895 * 18 16 10 47 47 H 1.08997 * 109.47078 * 188.27755 * 18 16 10 48 48 H 1.09006 * 109.46898 * 308.27573 * 18 16 10 49 49 H 1.07997 * 120.00506 * 179.97438 * 19 5 4 50 50 H 1.08004 * 119.91588 * 179.97438 * 20 19 5 51 51 H 0.97002 * 119.99914 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2941 2.3694 -0.0005 5 6 1.9331 3.6148 0.0053 6 6 1.1377 4.8507 0.0099 7 6 1.7557 6.0511 0.0150 8 6 0.9642 7.2811 0.0191 9 8 -0.2479 7.2244 0.1152 10 7 1.5770 8.4771 -0.0834 11 6 3.0444 8.5764 -0.0781 12 6 3.4801 9.4120 -1.2866 13 7 2.7705 10.6981 -1.2700 14 6 3.2845 11.5965 -2.3124 15 6 1.3201 10.5083 -1.4070 16 6 0.7960 9.7170 -0.2097 17 1 0.9067 10.3132 0.6961 18 6 -0.6793 9.3753 -0.4277 19 6 3.3318 3.6804 0.0062 20 6 4.0751 2.5218 0.0019 21 6 3.4404 1.2846 -0.0039 22 8 4.1775 0.1462 -0.0076 23 6 5.5129 0.2825 -0.1273 24 1 5.9570 1.2669 -0.1321 25 6 6.3170 -0.8417 -0.2442 26 7 5.7761 -2.0405 -0.2388 27 14 8.1679 -0.6529 -0.4109 28 1 8.7035 0.0485 0.7835 29 1 8.7945 -1.9948 -0.5199 30 1 8.4771 0.1378 -1.6293 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 0.2155 2.3144 -0.0005 35 1 0.0590 4.7986 0.0085 36 1 2.8345 6.1032 0.0161 37 1 3.3753 9.0609 0.8404 38 1 3.4792 7.5793 -0.1466 39 1 4.5545 9.5888 -1.2381 40 1 3.2403 8.8760 -2.2049 41 1 3.0846 11.1663 -3.2938 42 1 2.7910 12.5652 -2.2329 43 1 4.3593 11.7246 -2.1840 44 1 0.8282 11.4802 -1.4459 45 1 1.1104 9.9574 -2.3239 46 1 -1.0872 8.9305 0.4799 47 1 -1.2312 10.2843 -0.6668 48 1 -0.7703 8.6676 -1.2518 49 1 3.8274 4.6399 0.0102 50 1 5.1538 2.5740 0.0022 51 1 6.3384 -2.8267 -0.3210 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089937707.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:26 Heat of formation + Delta-G solvation = -22.463990 kcal Electronic energy + Delta-G solvation = -31823.614749 eV Core-core repulsion = 27497.849055 eV Total energy + Delta-G solvation = -4325.765694 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.188 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.57066 -39.71508 -38.17127 -37.68807 -36.59141 -34.75937 -33.68706 -32.69397 -32.05048 -29.77337 -29.29373 -28.45456 -27.22899 -26.55488 -25.57666 -24.50560 -23.90323 -22.31854 -21.83995 -21.39655 -19.95087 -18.48491 -18.19384 -17.82104 -16.96802 -16.44190 -15.96097 -15.71860 -15.44698 -15.27536 -15.21786 -15.11980 -15.02676 -14.72023 -14.26882 -14.00737 -13.64236 -13.61106 -13.48427 -13.39898 -12.90326 -12.87250 -12.44165 -12.39378 -12.24145 -12.16671 -11.82065 -11.80792 -11.75256 -11.59035 -11.46344 -11.31014 -11.23085 -11.10576 -10.98340 -10.79823 -10.70823 -10.51953 -9.62190 -9.42432 -9.12333 -8.93789 -8.85250 -8.53186 -8.00182 -6.93196 -6.63253 -4.14714 1.00999 2.09160 2.51632 2.88582 3.03630 3.05486 3.08220 3.47481 3.59091 3.81613 3.92670 4.44507 4.47160 4.58589 4.62988 4.81277 4.88502 4.92153 4.98298 4.99582 5.07105 5.13517 5.15952 5.22552 5.35553 5.39361 5.43527 5.44267 5.48316 5.53074 5.55537 5.56393 5.64216 5.68911 5.71808 5.81851 5.98519 6.04155 6.15287 6.20533 6.41418 6.44340 6.51344 6.56790 6.60914 6.66048 6.82887 6.98242 7.06552 7.23800 7.43360 7.46772 7.77006 8.05808 8.32456 8.79599 9.48353 10.52436 Molecular weight = 360.19amu Principal moments of inertia in cm(-1) A = 0.011278 B = 0.002174 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.115036 B =12873.949282 C =15115.858890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.052 3.948 4 C -0.136 4.136 5 C -0.166 4.166 6 C 0.036 3.964 7 C -0.282 4.282 8 C 0.559 3.441 9 O -0.550 6.550 10 N -0.614 5.614 11 C 0.111 3.889 12 C 0.038 3.962 13 N -0.544 5.544 14 C 0.025 3.975 15 C 0.044 3.956 16 C 0.150 3.850 17 H 0.075 0.925 18 C -0.137 4.137 19 C -0.059 4.059 20 C -0.225 4.225 21 C 0.148 3.852 22 O -0.147 6.147 23 C -0.391 4.391 24 H 0.097 0.903 25 C 0.042 3.958 26 N -0.845 5.845 27 Si 0.945 3.055 28 H -0.267 1.267 29 H -0.276 1.276 30 H -0.267 1.267 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.041 0.959 41 H 0.025 0.975 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.038 0.962 46 H 0.083 0.917 47 H 0.043 0.957 48 H 0.063 0.937 49 H 0.115 0.885 50 H 0.137 0.863 51 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.594 21.197 -2.126 22.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.007 3.993 4 C -0.155 4.155 5 C -0.168 4.168 6 C 0.016 3.984 7 C -0.303 4.303 8 C 0.353 3.647 9 O -0.431 6.431 10 N -0.349 5.349 11 C -0.012 4.012 12 C -0.091 4.091 13 N -0.269 5.269 14 C -0.123 4.123 15 C -0.084 4.084 16 C 0.047 3.953 17 H 0.093 0.907 18 C -0.195 4.195 19 C -0.078 4.078 20 C -0.244 4.244 21 C 0.091 3.909 22 O -0.047 6.047 23 C -0.467 4.467 24 H 0.114 0.886 25 C -0.165 4.165 26 N -0.476 5.476 27 Si 0.769 3.231 28 H -0.192 1.192 29 H -0.201 1.201 30 H -0.192 1.192 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.094 0.906 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.059 0.941 41 H 0.044 0.956 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.057 0.943 46 H 0.101 0.899 47 H 0.061 0.939 48 H 0.082 0.918 49 H 0.132 0.868 50 H 0.155 0.845 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.005 20.654 -1.624 21.571 hybrid contribution 0.759 0.003 -0.951 1.217 sum -5.247 20.658 -2.575 21.468 Atomic orbital electron populations 1.22918 0.80165 1.03077 1.00418 1.86238 1.19576 1.26193 1.89709 1.18048 0.89386 0.84614 1.07272 1.20878 0.98593 0.90921 1.05156 1.18168 0.92773 0.91416 1.14403 1.22231 0.99087 0.90940 0.86137 1.22602 0.99863 0.91788 1.16059 1.18358 0.87468 0.83477 0.75396 1.90796 1.14213 1.87039 1.51082 1.48043 1.06643 1.06099 1.74072 1.21899 0.79977 1.01033 0.98320 1.22541 0.99083 0.89545 0.97900 1.61942 1.03896 1.13071 1.47945 1.22365 1.00965 0.96705 0.92247 1.22535 0.88085 1.00264 0.97561 1.21174 0.92000 0.84613 0.97560 0.90675 1.22150 0.92717 0.99846 1.04779 1.20905 0.92494 0.97277 0.97101 1.20825 1.00695 0.90742 1.12169 1.18881 0.88270 0.87653 0.96052 1.83992 1.19725 1.25832 1.75198 1.21468 0.78414 0.95062 1.51718 0.88567 1.25414 1.00902 0.94145 0.96078 1.70038 1.36790 0.97849 1.42963 0.85718 0.79768 0.78229 0.79422 1.19212 1.20080 1.19234 0.93431 0.93454 0.88961 0.85871 0.86033 0.85694 0.90637 0.88513 0.89378 0.94098 0.95606 0.91254 0.91139 0.89704 0.94323 0.89852 0.93869 0.91801 0.86758 0.84518 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.81 101.05 0.99 1.43 16 2 O -0.30 -6.43 10.28 -34.22 -0.35 -6.78 16 3 C 0.05 1.10 6.70 -39.13 -0.26 0.84 16 4 C -0.14 -2.44 8.77 -38.99 -0.34 -2.78 16 5 C -0.17 -2.84 5.87 -105.04 -0.62 -3.46 16 6 C 0.04 0.54 9.45 -37.19 -0.35 0.19 16 7 C -0.28 -3.88 8.75 -37.50 -0.33 -4.21 16 8 C 0.56 7.91 7.39 -13.04 -0.10 7.81 16 9 O -0.55 -9.05 11.96 5.17 0.06 -8.99 16 10 N -0.61 -7.11 3.02 -166.88 -0.50 -7.61 16 11 C 0.11 1.01 6.52 -3.60 -0.02 0.99 16 12 C 0.04 0.31 5.62 -3.70 -0.02 0.29 16 13 N -0.54 -4.61 4.88 -242.89 -1.19 -5.80 16 14 C 0.03 0.17 9.58 60.07 0.58 0.74 16 15 C 0.04 0.39 4.88 -3.93 -0.02 0.37 16 16 C 0.15 1.56 3.63 -67.72 -0.25 1.32 16 17 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 18 C -0.14 -1.53 7.63 37.16 0.28 -1.25 16 19 C -0.06 -1.03 9.40 -39.13 -0.37 -1.39 16 20 C -0.22 -4.58 9.14 -39.49 -0.36 -4.94 16 21 C 0.15 3.50 6.67 -38.77 -0.26 3.24 16 22 O -0.15 -4.09 9.52 -13.98 -0.13 -4.22 16 23 C -0.39 -10.40 9.48 30.91 0.29 -10.11 16 24 H 0.10 2.30 5.19 -52.49 -0.27 2.03 16 25 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 26 N -0.84 -23.85 13.67 55.48 0.76 -23.10 16 27 Si 0.94 19.35 29.55 -169.99 -5.02 14.33 16 28 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 29 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 30 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 31 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 32 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.12 1.86 6.28 -52.49 -0.33 1.53 16 35 H 0.12 1.81 7.53 -52.48 -0.40 1.42 16 36 H 0.13 1.50 3.89 -52.48 -0.20 1.30 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.82 5.36 -51.93 -0.28 0.54 16 39 H 0.09 0.59 8.07 -51.93 -0.42 0.17 16 40 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 44 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 45 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 1.09 6.59 -51.93 -0.34 0.75 16 47 H 0.04 0.38 8.13 -51.93 -0.42 -0.04 16 48 H 0.06 0.83 6.97 -51.93 -0.36 0.47 16 49 H 0.11 1.61 6.15 -52.49 -0.32 1.29 16 50 H 0.14 2.69 5.62 -52.48 -0.29 2.40 16 51 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 405.58 15.07 6.11 6.11 Total: -1.00 -31.82 405.58 -8.88 -40.71 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.37 Total: 5.26 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -1.25 Total: -9.91 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: -0.93 Total: -36.51 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.42 Total: -19.99 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.82 -8.88 -40.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089937707.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.241 kcal (2) G-P(sol) polarization free energy of solvation -31.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds