Wall clock time and date at job start Tue Mar 31 2020 06:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35958 * 116.99637 * 2 1 4 4 C 1.38076 * 120.00068 * 359.97438 * 3 2 1 5 5 C 1.39975 * 119.83639 * 179.72636 * 4 3 2 6 6 C 1.46971 * 120.07875 * 180.23520 * 5 4 3 7 7 C 1.35018 * 119.99887 * 180.02562 * 6 5 4 8 8 C 1.46265 * 119.99720 * 179.97438 * 7 6 5 9 9 O 1.21720 * 119.99726 * 5.29232 * 8 7 6 10 10 N 1.34771 * 119.99679 * 185.28756 * 8 7 6 11 11 C 1.47080 * 120.88514 * 354.43352 * 10 8 7 12 12 C 1.53243 * 108.52067 * 128.81416 * 11 10 8 13 13 N 1.46898 * 109.33765 * 53.83446 * 12 11 10 14 14 C 1.46905 * 111.00217 * 172.74588 * 13 12 11 15 15 C 1.46906 * 111.27173 * 296.89188 * 13 12 11 16 16 C 1.47084 * 120.87834 * 174.15540 * 10 8 7 17 17 H 1.08996 * 109.62765 * 111.47353 * 16 10 8 18 18 C 1.52997 * 109.63005 * 350.89534 * 16 10 8 19 19 C 1.40024 * 119.84674 * 0.25578 * 5 4 3 20 20 C 1.37653 * 119.99575 * 359.97438 * 19 5 4 21 21 C 1.39052 * 120.16163 * 0.02562 * 20 19 5 22 22 O 1.35619 * 119.91978 * 180.02562 * 21 20 19 23 23 C 1.34764 * 116.99746 * 354.17306 * 22 21 20 24 24 H 1.07997 * 120.00291 * 5.08313 * 23 22 21 25 25 C 1.38710 * 119.99548 * 185.08036 * 23 22 21 26 26 N 1.31521 * 120.00278 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 119.99869 * 179.97438 * 25 23 22 28 28 H 1.48508 * 109.46944 * 60.00547 * 27 25 23 29 29 H 1.48498 * 109.47222 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47189 * 300.00699 * 27 25 23 31 31 H 1.09002 * 109.47539 * 299.99879 * 1 2 3 32 32 H 1.08994 * 109.47059 * 60.00267 * 1 2 3 33 33 H 1.09006 * 109.46674 * 179.97438 * 1 2 3 34 34 H 1.07999 * 120.08139 * 0.02562 * 4 3 2 35 35 H 1.08003 * 119.99697 * 359.97438 * 6 5 4 36 36 H 1.08003 * 120.00379 * 359.97438 * 7 6 5 37 37 H 1.08994 * 109.62926 * 248.52165 * 11 10 8 38 38 H 1.08995 * 109.62965 * 9.11046 * 11 10 8 39 39 H 1.08995 * 109.49042 * 173.78838 * 12 11 10 40 40 H 1.09000 * 109.49774 * 293.87322 * 12 11 10 41 41 H 1.08997 * 109.46911 * 63.95001 * 14 13 12 42 42 H 1.09000 * 109.47033 * 183.95225 * 14 13 12 43 43 H 1.08997 * 109.46877 * 303.95478 * 14 13 12 44 44 H 1.08997 * 109.49722 * 183.06664 * 15 13 12 45 45 H 1.09006 * 109.48972 * 303.12371 * 15 13 12 46 46 H 1.09002 * 109.47256 * 68.26895 * 18 16 10 47 47 H 1.08997 * 109.47078 * 188.27755 * 18 16 10 48 48 H 1.09006 * 109.46898 * 308.27573 * 18 16 10 49 49 H 1.07997 * 120.00506 * 179.97438 * 19 5 4 50 50 H 1.08004 * 119.91588 * 179.97438 * 20 19 5 51 51 H 0.97002 * 119.99914 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2941 2.3694 -0.0005 5 6 1.9331 3.6148 0.0053 6 6 1.1377 4.8507 0.0099 7 6 1.7557 6.0511 0.0150 8 6 0.9642 7.2811 0.0191 9 8 -0.2479 7.2244 0.1152 10 7 1.5770 8.4771 -0.0834 11 6 3.0444 8.5764 -0.0781 12 6 3.4801 9.4120 -1.2866 13 7 2.7705 10.6981 -1.2700 14 6 3.2845 11.5965 -2.3124 15 6 1.3201 10.5083 -1.4070 16 6 0.7960 9.7170 -0.2097 17 1 0.9067 10.3132 0.6961 18 6 -0.6793 9.3753 -0.4277 19 6 3.3318 3.6804 0.0062 20 6 4.0751 2.5218 0.0019 21 6 3.4404 1.2846 -0.0039 22 8 4.1775 0.1462 -0.0076 23 6 5.5129 0.2825 -0.1273 24 1 5.9570 1.2669 -0.1321 25 6 6.3170 -0.8417 -0.2442 26 7 5.7761 -2.0405 -0.2388 27 14 8.1679 -0.6529 -0.4109 28 1 8.7035 0.0485 0.7835 29 1 8.7945 -1.9948 -0.5199 30 1 8.4771 0.1378 -1.6293 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 0.2155 2.3144 -0.0005 35 1 0.0590 4.7986 0.0085 36 1 2.8345 6.1032 0.0161 37 1 3.3753 9.0609 0.8404 38 1 3.4792 7.5793 -0.1466 39 1 4.5545 9.5888 -1.2381 40 1 3.2403 8.8760 -2.2049 41 1 3.0846 11.1663 -3.2938 42 1 2.7910 12.5652 -2.2329 43 1 4.3593 11.7246 -2.1840 44 1 0.8282 11.4802 -1.4459 45 1 1.1104 9.9574 -2.3239 46 1 -1.0872 8.9305 0.4799 47 1 -1.2312 10.2843 -0.6668 48 1 -0.7703 8.6676 -1.2518 49 1 3.8274 4.6399 0.0102 50 1 5.1538 2.5740 0.0022 51 1 6.3384 -2.8267 -0.3210 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089937707.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:24 Heat of formation + Delta-G solvation = -43.264789 kcal Electronic energy + Delta-G solvation = -31824.516739 eV Core-core repulsion = 27497.849055 eV Total energy + Delta-G solvation = -4326.667685 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.188 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.56269 -41.25566 -39.31621 -39.07245 -38.07508 -35.62683 -34.87556 -34.25711 -33.33542 -31.28421 -30.33611 -29.60814 -27.98691 -27.83510 -27.35474 -25.32584 -25.02562 -23.39713 -23.23813 -22.44489 -21.08572 -19.95804 -19.53171 -19.33765 -18.10780 -17.73249 -17.14013 -16.91825 -16.68447 -16.45410 -16.32981 -16.17248 -15.89264 -15.73442 -15.57119 -15.43191 -15.27991 -15.01932 -14.82297 -14.38085 -13.93527 -13.74492 -13.63570 -13.47882 -13.33508 -13.24515 -13.10451 -12.96598 -12.87755 -12.64687 -12.53587 -12.50684 -12.29504 -12.20156 -12.13746 -12.06847 -12.03618 -11.90057 -11.32662 -10.97624 -10.50405 -10.20092 -9.75595 -9.48541 -9.29264 -8.53268 -8.46739 -6.11261 -0.31416 0.54092 1.10728 1.37533 1.49680 1.54282 1.96799 2.17801 2.33017 2.54694 2.85851 2.90705 3.14400 3.35191 3.52180 3.81629 3.87773 3.90122 3.99817 4.11232 4.14446 4.24498 4.28540 4.29948 4.33520 4.40035 4.41238 4.51488 4.55156 4.59844 4.64206 4.68923 4.69473 4.70198 4.76908 4.85370 4.90870 4.97706 5.03941 5.06490 5.09637 5.16847 5.25999 5.34813 5.45859 5.50640 5.65145 5.76919 5.91672 5.97437 5.97917 5.99673 6.45364 6.58909 6.95656 7.22635 7.75733 8.74827 Molecular weight = 360.19amu Principal moments of inertia in cm(-1) A = 0.011278 B = 0.002174 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.115036 B =12873.949282 C =15115.858890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.343 6.343 3 C 0.038 3.962 4 C -0.134 4.134 5 C -0.133 4.133 6 C 0.014 3.986 7 C -0.244 4.244 8 C 0.549 3.451 9 O -0.576 6.576 10 N -0.610 5.610 11 C 0.105 3.895 12 C 0.039 3.961 13 N -0.551 5.551 14 C 0.025 3.975 15 C 0.051 3.949 16 C 0.146 3.854 17 H 0.082 0.918 18 C -0.129 4.129 19 C -0.065 4.065 20 C -0.217 4.217 21 C 0.101 3.899 22 O -0.211 6.211 23 C -0.416 4.416 24 H 0.111 0.889 25 C -0.022 4.022 26 N -0.915 5.915 27 Si 1.021 2.979 28 H -0.254 1.254 29 H -0.275 1.275 30 H -0.254 1.254 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.154 0.846 35 H 0.127 0.873 36 H 0.150 0.850 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.030 0.970 41 H 0.022 0.978 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.102 0.898 45 H 0.026 0.974 46 H 0.061 0.939 47 H 0.066 0.934 48 H 0.041 0.959 49 H 0.156 0.844 50 H 0.139 0.861 51 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.623 26.183 -2.285 26.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.258 6.258 3 C -0.007 4.007 4 C -0.153 4.153 5 C -0.134 4.134 6 C -0.005 4.005 7 C -0.265 4.265 8 C 0.342 3.658 9 O -0.459 6.459 10 N -0.343 5.343 11 C -0.018 4.018 12 C -0.089 4.089 13 N -0.275 5.275 14 C -0.122 4.122 15 C -0.078 4.078 16 C 0.043 3.957 17 H 0.100 0.900 18 C -0.186 4.186 19 C -0.083 4.083 20 C -0.236 4.236 21 C 0.049 3.951 22 O -0.117 6.117 23 C -0.491 4.491 24 H 0.128 0.872 25 C -0.221 4.221 26 N -0.551 5.551 27 Si 0.840 3.160 28 H -0.178 1.178 29 H -0.200 1.200 30 H -0.178 1.178 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.128 0.872 34 H 0.172 0.828 35 H 0.144 0.856 36 H 0.167 0.833 37 H 0.105 0.895 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.049 0.951 41 H 0.041 0.959 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.120 0.880 45 H 0.044 0.956 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.060 0.940 49 H 0.174 0.826 50 H 0.156 0.844 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.068 25.747 -1.785 26.512 hybrid contribution 0.304 -0.918 -0.885 1.311 sum -5.764 24.828 -2.670 25.628 Atomic orbital electron populations 1.23273 0.77125 1.04975 1.02048 1.86193 1.22923 1.26851 1.89882 1.18383 0.89171 0.85789 1.07394 1.21242 1.00066 0.90059 1.03903 1.18531 0.93050 0.91978 1.09860 1.22119 0.99248 0.90338 0.88833 1.22931 1.01093 0.91265 1.11180 1.18484 0.87205 0.84369 0.75716 1.90815 1.15355 1.87557 1.52124 1.48167 1.07997 1.05722 1.72377 1.22143 0.78209 1.02007 0.99397 1.22560 1.00233 0.89289 0.96833 1.61978 1.03509 1.13305 1.48743 1.22416 1.01684 0.96617 0.91507 1.22456 0.88764 1.00615 0.95960 1.21295 0.91403 0.84287 0.98693 0.89973 1.21990 0.93721 1.00193 1.02727 1.21266 0.92547 0.97862 0.96626 1.21034 1.01145 0.90733 1.10701 1.19581 0.89523 0.88178 0.97798 1.83981 1.20260 1.27791 1.79648 1.21954 0.78842 0.95940 1.52396 0.87213 1.26695 1.06210 0.93530 0.95639 1.70202 1.38638 0.98843 1.47449 0.84618 0.73003 0.78305 0.80115 1.17776 1.19995 1.17846 0.91609 0.91694 0.87228 0.82828 0.85564 0.83306 0.89504 0.87603 0.87366 0.95122 0.95896 0.90341 0.90090 0.87982 0.95551 0.92046 0.91514 0.93975 0.82642 0.84399 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.81 113.37 1.11 1.69 16 2 O -0.34 -15.17 10.28 -79.10 -0.81 -15.98 16 3 C 0.04 1.64 6.70 22.56 0.15 1.79 16 4 C -0.13 -4.58 8.77 22.65 0.20 -4.38 16 5 C -0.13 -4.16 5.87 -20.14 -0.12 -4.28 16 6 C 0.01 0.38 9.45 23.82 0.23 0.61 16 7 C -0.24 -5.68 8.75 23.62 0.21 -5.47 16 8 C 0.55 13.80 7.39 86.33 0.64 14.44 16 9 O -0.58 -17.73 11.96 -4.41 -0.05 -17.78 16 10 N -0.61 -12.05 3.02 -800.09 -2.41 -14.46 16 11 C 0.10 1.46 6.52 86.35 0.56 2.02 16 12 C 0.04 0.50 5.62 86.38 0.49 0.98 16 13 N -0.55 -7.29 4.88 -922.38 -4.51 -11.80 16 14 C 0.03 0.25 9.58 127.69 1.22 1.47 16 15 C 0.05 0.74 4.88 86.23 0.42 1.16 16 16 C 0.15 2.61 3.63 44.81 0.16 2.78 16 17 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 18 C -0.13 -2.62 7.63 71.98 0.55 -2.07 16 19 C -0.07 -2.07 9.40 22.56 0.21 -1.86 16 20 C -0.22 -8.82 9.14 22.33 0.20 -8.61 16 21 C 0.10 5.01 6.67 22.80 0.15 5.16 16 22 O -0.21 -12.70 9.52 -6.66 -0.06 -12.76 16 23 C -0.42 -23.52 9.48 67.93 0.64 -22.88 16 24 H 0.11 5.50 5.19 -2.91 -0.02 5.48 16 25 C -0.02 -1.24 5.49 84.85 0.47 -0.77 16 26 N -0.91 -55.83 13.67 21.62 0.30 -55.54 16 27 Si 1.02 41.33 29.55 68.60 2.03 43.36 16 28 H -0.25 -9.51 7.11 99.48 0.71 -8.81 16 29 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 30 H -0.25 -9.55 7.11 99.48 0.71 -8.85 16 31 H 0.07 1.63 7.66 -2.39 -0.02 1.61 16 32 H 0.06 1.61 7.66 -2.39 -0.02 1.59 16 33 H 0.11 2.71 8.14 -2.38 -0.02 2.69 16 34 H 0.15 4.23 6.28 -2.91 -0.02 4.21 16 35 H 0.13 3.35 7.53 -2.91 -0.02 3.33 16 36 H 0.15 2.73 3.89 -2.91 -0.01 2.72 16 37 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.11 1.25 5.36 -2.39 -0.01 1.24 16 39 H 0.11 0.96 8.07 -2.39 -0.02 0.94 16 40 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.02 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.08 0.63 8.08 -2.39 -0.02 0.61 16 44 H 0.10 1.13 8.11 -2.39 -0.02 1.11 16 45 H 0.03 0.45 8.14 -2.38 -0.02 0.43 16 46 H 0.06 1.53 6.59 -2.39 -0.02 1.51 16 47 H 0.07 1.02 8.13 -2.39 -0.02 1.00 16 48 H 0.04 1.04 6.97 -2.38 -0.02 1.02 16 49 H 0.16 3.59 6.15 -2.91 -0.02 3.57 16 50 H 0.14 5.47 5.62 -2.91 -0.02 5.45 16 51 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -77.18 405.58 2.93 -74.25 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.95 Total: 28.93 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: 7.50 Total: -18.23 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -6.62 Total: -81.80 kcal Atomic # 8 Polarization: -45.59 SS G_CDS: -0.93 Total: -46.52 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -77.18 2.93 -74.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089937707.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.988 kcal (2) G-P(sol) polarization free energy of solvation -77.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds