Wall clock time and date at job start Tue Mar 31 2020 06:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35954 * 116.99958 * 2 1 4 4 C 1.38070 * 120.00246 * 0.02562 * 3 2 1 5 5 C 1.39975 * 119.84129 * 180.02562 * 4 3 2 6 6 C 1.46966 * 120.08290 * 179.97438 * 5 4 3 7 7 C 1.35020 * 120.00091 * 179.97438 * 6 5 4 8 8 C 1.46257 * 120.00207 * 179.97438 * 7 6 5 9 9 O 1.21730 * 119.99769 * 4.79318 * 8 7 6 10 10 N 1.34771 * 120.00533 * 184.78989 * 8 7 6 11 11 C 1.47088 * 120.87971 * 355.06727 * 10 8 7 12 12 C 1.52784 * 108.76624 * 231.12123 * 11 10 8 13 13 N 1.46897 * 109.42510 * 306.42607 * 12 11 10 14 14 C 1.46897 * 111.00377 * 187.11241 * 13 12 11 15 15 C 1.46905 * 111.26886 * 62.96107 * 13 12 11 16 16 C 1.47075 * 120.88554 * 175.34569 * 10 8 7 17 17 H 1.08995 * 109.62910 * 248.72313 * 16 10 8 18 18 C 1.53006 * 109.62901 * 9.10917 * 16 10 8 19 19 C 1.40037 * 119.83924 * 359.97438 * 5 4 3 20 20 C 1.37642 * 120.00139 * 359.97438 * 19 5 4 21 21 C 1.39063 * 120.16184 * 359.73011 * 20 19 5 22 22 O 1.35611 * 119.92099 * 180.29913 * 21 20 19 23 23 C 1.34756 * 117.00265 * 354.39052 * 22 21 20 24 24 H 1.08006 * 119.99893 * 5.08640 * 23 22 21 25 25 C 1.38707 * 120.00145 * 185.07979 * 23 22 21 26 26 N 1.31513 * 119.99957 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99801 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.46913 * 60.00338 * 27 25 23 29 29 H 1.48509 * 109.46904 * 179.97438 * 27 25 23 30 30 H 1.48494 * 109.47106 * 299.99968 * 27 25 23 31 31 H 1.08997 * 109.47092 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46900 * 300.00126 * 1 2 3 33 33 H 1.09007 * 109.46693 * 59.99806 * 1 2 3 34 34 H 1.08006 * 120.08428 * 0.02562 * 4 3 2 35 35 H 1.07997 * 120.00016 * 359.97438 * 6 5 4 36 36 H 1.07998 * 120.00503 * 0.02562 * 7 6 5 37 37 H 1.09000 * 109.62617 * 350.89444 * 11 10 8 38 38 H 1.08999 * 109.62839 * 111.47409 * 11 10 8 39 39 H 1.09000 * 109.56507 * 186.36944 * 12 11 10 40 40 H 1.09008 * 109.35880 * 66.35237 * 12 11 10 41 41 H 1.09004 * 109.46797 * 295.70032 * 14 13 12 42 42 H 1.09006 * 109.46612 * 55.69530 * 14 13 12 43 43 H 1.08993 * 109.47323 * 175.69584 * 14 13 12 44 44 H 1.09001 * 109.49048 * 176.93452 * 15 13 12 45 45 H 1.09004 * 109.48728 * 56.85704 * 15 13 12 46 46 H 1.08996 * 109.47138 * 54.49046 * 18 16 10 47 47 H 1.08995 * 109.47225 * 174.49570 * 18 16 10 48 48 H 1.09004 * 109.46476 * 294.49850 * 18 16 10 49 49 H 1.08002 * 119.99561 * 179.97438 * 19 5 4 50 50 H 1.07996 * 119.92007 * 180.02562 * 20 19 5 51 51 H 0.96999 * 119.99912 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2943 2.3693 0.0005 5 6 1.9333 3.6147 0.0000 6 6 1.1381 4.8507 0.0000 7 6 1.7562 6.0511 0.0000 8 6 0.9649 7.2811 -0.0006 9 8 -0.2480 7.2246 0.0870 10 7 1.5783 8.4772 -0.0980 11 6 3.0459 8.5752 -0.0964 12 6 3.4686 9.6060 0.9491 13 7 2.7613 10.8698 0.7029 14 6 3.2644 11.9344 1.5812 15 6 1.3092 10.7058 0.8529 16 6 0.7982 9.7195 -0.2027 17 1 0.9220 10.1469 -1.1977 18 6 -0.6813 9.4200 0.0474 19 6 3.3321 3.6802 -0.0006 20 6 4.0753 2.5217 0.0000 21 6 3.4406 1.2844 0.0067 22 8 4.1776 0.1460 0.0134 23 6 5.5132 0.2812 -0.1043 24 1 5.9575 1.2656 -0.1156 25 6 6.3175 -0.8439 -0.2109 26 7 5.7765 -2.0425 -0.1976 27 14 8.1689 -0.6564 -0.3733 28 1 8.7009 0.0534 0.8177 29 1 8.7959 -1.9992 -0.4697 30 1 8.4819 0.1255 -1.5963 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 0.2157 2.3144 0.0014 35 1 0.0594 4.7988 0.0000 36 1 2.8349 6.1032 -0.0004 37 1 3.4774 7.6055 0.1520 38 1 3.3928 8.8923 -1.0799 39 1 4.5438 9.7722 0.8840 40 1 3.2172 9.2362 1.9433 41 1 3.0465 11.6824 2.6191 42 1 4.3419 12.0346 1.4501 43 1 2.7782 12.8759 1.3261 44 1 0.8185 11.6697 0.7180 45 1 1.0876 10.3204 1.8482 46 1 -0.7920 8.9101 1.0043 47 1 -1.2430 10.3539 0.0662 48 1 -1.0627 8.7825 -0.7503 49 1 3.8278 4.6398 -0.0014 50 1 5.1540 2.5737 0.0000 51 1 6.3389 -2.8293 -0.2725 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089937709.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:31 Heat of formation + Delta-G solvation = -21.478942 kcal Electronic energy + Delta-G solvation = -31780.811316 eV Core-core repulsion = 27455.088337 eV Total energy + Delta-G solvation = -4325.722979 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.188 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.57442 -39.71271 -38.17200 -37.68668 -36.58931 -34.76026 -33.68704 -32.68811 -32.04463 -29.77339 -29.32494 -28.44659 -27.23067 -26.54833 -25.57228 -24.49691 -23.89258 -22.32031 -21.83755 -21.40529 -19.97456 -18.48283 -18.19077 -17.80236 -16.95424 -16.40694 -15.94423 -15.75894 -15.42199 -15.35293 -15.21804 -15.10627 -15.03448 -14.71561 -14.25692 -14.00571 -13.63702 -13.60083 -13.46339 -13.42675 -12.88128 -12.82028 -12.46260 -12.41156 -12.30122 -12.15836 -11.84157 -11.79889 -11.74625 -11.59407 -11.46892 -11.30141 -11.22607 -11.10178 -10.98757 -10.79448 -10.70542 -10.51702 -9.61596 -9.41598 -9.06784 -8.95213 -8.84954 -8.52735 -7.99955 -6.92891 -6.63028 -4.14474 1.01146 2.09502 2.51810 2.88464 3.03810 3.05778 3.08436 3.48636 3.57608 3.81848 3.92907 4.44702 4.45854 4.58359 4.63842 4.82199 4.88722 4.91195 4.97955 4.99994 5.07041 5.13536 5.15433 5.22356 5.35487 5.39321 5.43342 5.45315 5.47678 5.53255 5.55589 5.56632 5.64719 5.69902 5.71714 5.82060 5.98763 6.04997 6.15723 6.20935 6.41913 6.44883 6.51452 6.56692 6.60869 6.66259 6.83182 6.98533 7.06794 7.24108 7.43367 7.46835 7.77252 8.06088 8.32409 8.79835 9.48638 10.52673 Molecular weight = 360.19amu Principal moments of inertia in cm(-1) A = 0.011592 B = 0.002134 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.811642 B =13116.029204 C =15351.482077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.052 3.948 4 C -0.136 4.136 5 C -0.166 4.166 6 C 0.036 3.964 7 C -0.282 4.282 8 C 0.559 3.441 9 O -0.551 6.551 10 N -0.614 5.614 11 C 0.111 3.889 12 C 0.038 3.962 13 N -0.544 5.544 14 C 0.025 3.975 15 C 0.044 3.956 16 C 0.150 3.850 17 H 0.076 0.924 18 C -0.135 4.135 19 C -0.059 4.059 20 C -0.225 4.225 21 C 0.148 3.852 22 O -0.147 6.147 23 C -0.391 4.391 24 H 0.097 0.903 25 C 0.042 3.958 26 N -0.845 5.845 27 Si 0.945 3.055 28 H -0.267 1.267 29 H -0.276 1.276 30 H -0.267 1.267 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.040 0.960 41 H 0.025 0.975 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.039 0.961 46 H 0.068 0.932 47 H 0.040 0.960 48 H 0.078 0.922 49 H 0.115 0.885 50 H 0.137 0.863 51 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.599 21.506 1.438 22.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.007 3.993 4 C -0.155 4.155 5 C -0.168 4.168 6 C 0.016 3.984 7 C -0.303 4.303 8 C 0.353 3.647 9 O -0.432 6.432 10 N -0.348 5.348 11 C -0.012 4.012 12 C -0.090 4.090 13 N -0.269 5.269 14 C -0.123 4.123 15 C -0.084 4.084 16 C 0.046 3.954 17 H 0.094 0.906 18 C -0.192 4.192 19 C -0.078 4.078 20 C -0.244 4.244 21 C 0.091 3.909 22 O -0.047 6.047 23 C -0.467 4.467 24 H 0.114 0.886 25 C -0.165 4.165 26 N -0.476 5.476 27 Si 0.769 3.231 28 H -0.192 1.192 29 H -0.201 1.201 30 H -0.192 1.192 31 H 0.110 0.890 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.058 0.942 41 H 0.044 0.956 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.057 0.943 46 H 0.087 0.913 47 H 0.059 0.941 48 H 0.097 0.903 49 H 0.132 0.868 50 H 0.155 0.845 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.004 20.882 1.009 21.751 hybrid contribution 0.746 0.155 0.810 1.112 sum -5.258 21.037 1.820 21.760 Atomic orbital electron populations 1.22919 0.80165 1.03075 1.00418 1.86238 1.19575 1.26198 1.89711 1.18050 0.89384 0.84612 1.07276 1.20878 0.98594 0.90923 1.05150 1.18170 0.92774 0.91415 1.14406 1.22229 0.99088 0.90939 0.86119 1.22604 0.99860 0.91784 1.16056 1.18371 0.87496 0.83503 0.75361 1.90814 1.14138 1.87041 1.51171 1.48025 1.06623 1.05985 1.74181 1.21793 0.80031 0.99701 0.99671 1.22460 0.99165 0.89549 0.97847 1.61936 1.04162 1.06612 1.54142 1.22365 1.01023 0.94688 0.94198 1.22615 0.87980 0.99750 0.98103 1.21298 0.92106 0.83489 0.98490 0.90625 1.22171 0.92429 0.99792 1.04855 1.20908 0.92495 0.97280 0.97089 1.20824 1.00696 0.90739 1.12165 1.18883 0.88275 0.87658 0.96046 1.83986 1.19710 1.25879 1.75168 1.21468 0.78386 0.95029 1.51781 0.88566 1.25413 1.00903 0.94141 0.96082 1.70034 1.36790 0.97824 1.42989 0.85719 0.79767 0.78229 0.79425 1.19239 1.20080 1.19206 0.88963 0.93455 0.93431 0.85873 0.86030 0.85714 0.88571 0.90645 0.89322 0.94220 0.95632 0.91142 0.91243 0.89754 0.94281 0.91277 0.94081 0.90344 0.86751 0.84519 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.81 101.05 0.99 1.43 16 2 O -0.30 -6.44 10.28 -34.21 -0.35 -6.79 16 3 C 0.05 1.10 6.70 -39.13 -0.26 0.84 16 4 C -0.14 -2.44 8.77 -38.99 -0.34 -2.78 16 5 C -0.17 -2.84 5.87 -105.04 -0.62 -3.46 16 6 C 0.04 0.54 9.45 -37.19 -0.35 0.19 16 7 C -0.28 -3.88 8.72 -37.51 -0.33 -4.21 16 8 C 0.56 7.89 7.53 -13.04 -0.10 7.79 16 9 O -0.55 -9.02 11.74 5.16 0.06 -8.96 16 10 N -0.61 -7.10 3.02 -166.88 -0.50 -7.60 16 11 C 0.11 1.01 6.44 -3.83 -0.02 0.99 16 12 C 0.04 0.31 5.60 -3.94 -0.02 0.29 16 13 N -0.54 -4.59 4.88 -242.90 -1.19 -5.78 16 14 C 0.03 0.17 9.58 60.06 0.58 0.74 16 15 C 0.04 0.39 4.91 -3.70 -0.02 0.37 16 16 C 0.15 1.56 3.65 -67.49 -0.25 1.31 16 17 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 18 C -0.13 -1.51 7.61 37.16 0.28 -1.23 16 19 C -0.06 -1.03 9.40 -39.12 -0.37 -1.39 16 20 C -0.22 -4.58 9.14 -39.49 -0.36 -4.94 16 21 C 0.15 3.50 6.67 -38.76 -0.26 3.24 16 22 O -0.15 -4.09 9.52 -13.93 -0.13 -4.22 16 23 C -0.39 -10.41 9.48 30.91 0.29 -10.11 16 24 H 0.10 2.30 5.18 -52.48 -0.27 2.03 16 25 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 26 N -0.84 -23.86 13.67 55.48 0.76 -23.10 16 27 Si 0.94 19.36 29.55 -169.99 -5.02 14.34 16 28 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 29 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 30 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 33 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 34 H 0.12 1.86 6.28 -52.48 -0.33 1.53 16 35 H 0.12 1.81 7.53 -52.49 -0.40 1.41 16 36 H 0.13 1.50 3.95 -52.49 -0.21 1.29 16 37 H 0.10 0.81 5.46 -51.93 -0.28 0.53 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.58 8.06 -51.93 -0.42 0.16 16 40 H 0.04 0.36 8.14 -51.92 -0.42 -0.06 16 41 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 42 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 45 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.91 6.86 -51.93 -0.36 0.55 16 47 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.08 1.03 6.69 -51.93 -0.35 0.68 16 49 H 0.11 1.61 6.15 -52.49 -0.32 1.29 16 50 H 0.14 2.70 5.61 -52.49 -0.29 2.40 16 51 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 405.56 15.07 6.11 6.11 Total: -1.00 -31.81 405.56 -8.90 -40.70 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -7.38 Total: 5.21 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -1.25 Total: -9.91 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.93 Total: -36.48 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.42 Total: -19.97 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.81 -8.90 -40.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089937709.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.224 kcal (2) G-P(sol) polarization free energy of solvation -31.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds