Wall clock time and date at job start Tue Mar 31 2020 06:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35954 * 116.99958 * 2 1 4 4 C 1.38070 * 120.00246 * 0.02562 * 3 2 1 5 5 C 1.39975 * 119.84129 * 180.02562 * 4 3 2 6 6 C 1.46966 * 120.08290 * 179.97438 * 5 4 3 7 7 C 1.35020 * 120.00091 * 179.97438 * 6 5 4 8 8 C 1.46257 * 120.00207 * 179.97438 * 7 6 5 9 9 O 1.21730 * 119.99769 * 4.79318 * 8 7 6 10 10 N 1.34771 * 120.00533 * 184.78989 * 8 7 6 11 11 C 1.47088 * 120.87971 * 355.06727 * 10 8 7 12 12 C 1.52784 * 108.76624 * 231.12123 * 11 10 8 13 13 N 1.46897 * 109.42510 * 306.42607 * 12 11 10 14 14 C 1.46897 * 111.00377 * 187.11241 * 13 12 11 15 15 C 1.46905 * 111.26886 * 62.96107 * 13 12 11 16 16 C 1.47075 * 120.88554 * 175.34569 * 10 8 7 17 17 H 1.08995 * 109.62910 * 248.72313 * 16 10 8 18 18 C 1.53006 * 109.62901 * 9.10917 * 16 10 8 19 19 C 1.40037 * 119.83924 * 359.97438 * 5 4 3 20 20 C 1.37642 * 120.00139 * 359.97438 * 19 5 4 21 21 C 1.39063 * 120.16184 * 359.73011 * 20 19 5 22 22 O 1.35611 * 119.92099 * 180.29913 * 21 20 19 23 23 C 1.34756 * 117.00265 * 354.39052 * 22 21 20 24 24 H 1.08006 * 119.99893 * 5.08640 * 23 22 21 25 25 C 1.38707 * 120.00145 * 185.07979 * 23 22 21 26 26 N 1.31513 * 119.99957 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99801 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.46913 * 60.00338 * 27 25 23 29 29 H 1.48509 * 109.46904 * 179.97438 * 27 25 23 30 30 H 1.48494 * 109.47106 * 299.99968 * 27 25 23 31 31 H 1.08997 * 109.47092 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46900 * 300.00126 * 1 2 3 33 33 H 1.09007 * 109.46693 * 59.99806 * 1 2 3 34 34 H 1.08006 * 120.08428 * 0.02562 * 4 3 2 35 35 H 1.07997 * 120.00016 * 359.97438 * 6 5 4 36 36 H 1.07998 * 120.00503 * 0.02562 * 7 6 5 37 37 H 1.09000 * 109.62617 * 350.89444 * 11 10 8 38 38 H 1.08999 * 109.62839 * 111.47409 * 11 10 8 39 39 H 1.09000 * 109.56507 * 186.36944 * 12 11 10 40 40 H 1.09008 * 109.35880 * 66.35237 * 12 11 10 41 41 H 1.09004 * 109.46797 * 295.70032 * 14 13 12 42 42 H 1.09006 * 109.46612 * 55.69530 * 14 13 12 43 43 H 1.08993 * 109.47323 * 175.69584 * 14 13 12 44 44 H 1.09001 * 109.49048 * 176.93452 * 15 13 12 45 45 H 1.09004 * 109.48728 * 56.85704 * 15 13 12 46 46 H 1.08996 * 109.47138 * 54.49046 * 18 16 10 47 47 H 1.08995 * 109.47225 * 174.49570 * 18 16 10 48 48 H 1.09004 * 109.46476 * 294.49850 * 18 16 10 49 49 H 1.08002 * 119.99561 * 179.97438 * 19 5 4 50 50 H 1.07996 * 119.92007 * 180.02562 * 20 19 5 51 51 H 0.96999 * 119.99912 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2943 2.3693 0.0005 5 6 1.9333 3.6147 0.0000 6 6 1.1381 4.8507 0.0000 7 6 1.7562 6.0511 0.0000 8 6 0.9649 7.2811 -0.0006 9 8 -0.2480 7.2246 0.0870 10 7 1.5783 8.4772 -0.0980 11 6 3.0459 8.5752 -0.0964 12 6 3.4686 9.6060 0.9491 13 7 2.7613 10.8698 0.7029 14 6 3.2644 11.9344 1.5812 15 6 1.3092 10.7058 0.8529 16 6 0.7982 9.7195 -0.2027 17 1 0.9220 10.1469 -1.1977 18 6 -0.6813 9.4200 0.0474 19 6 3.3321 3.6802 -0.0006 20 6 4.0753 2.5217 0.0000 21 6 3.4406 1.2844 0.0067 22 8 4.1776 0.1460 0.0134 23 6 5.5132 0.2812 -0.1043 24 1 5.9575 1.2656 -0.1156 25 6 6.3175 -0.8439 -0.2109 26 7 5.7765 -2.0425 -0.1976 27 14 8.1689 -0.6564 -0.3733 28 1 8.7009 0.0534 0.8177 29 1 8.7959 -1.9992 -0.4697 30 1 8.4819 0.1255 -1.5963 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 0.2157 2.3144 0.0014 35 1 0.0594 4.7988 0.0000 36 1 2.8349 6.1032 -0.0004 37 1 3.4774 7.6055 0.1520 38 1 3.3928 8.8923 -1.0799 39 1 4.5438 9.7722 0.8840 40 1 3.2172 9.2362 1.9433 41 1 3.0465 11.6824 2.6191 42 1 4.3419 12.0346 1.4501 43 1 2.7782 12.8759 1.3261 44 1 0.8185 11.6697 0.7180 45 1 1.0876 10.3204 1.8482 46 1 -0.7920 8.9101 1.0043 47 1 -1.2430 10.3539 0.0662 48 1 -1.0627 8.7825 -0.7503 49 1 3.8278 4.6398 -0.0014 50 1 5.1540 2.5737 0.0000 51 1 6.3389 -2.8293 -0.2725 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089937709.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:30 Heat of formation + Delta-G solvation = -42.251982 kcal Electronic energy + Delta-G solvation = -31781.712103 eV Core-core repulsion = 27455.088337 eV Total energy + Delta-G solvation = -4326.623766 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.188 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.56382 -41.25467 -39.31534 -39.06886 -38.07271 -35.62632 -34.87649 -34.25543 -33.32305 -31.28276 -30.35688 -29.61141 -27.98710 -27.82976 -27.35083 -25.30954 -25.01776 -23.39410 -23.24229 -22.44599 -21.11269 -19.95747 -19.53076 -19.32756 -18.07615 -17.71660 -17.11617 -16.89292 -16.68265 -16.54057 -16.32747 -16.20064 -15.85343 -15.73269 -15.56931 -15.44200 -15.27878 -15.01344 -14.83638 -14.33265 -13.93269 -13.72816 -13.61408 -13.48221 -13.35659 -13.26955 -13.11201 -13.00295 -12.87134 -12.64705 -12.53105 -12.50260 -12.31010 -12.19992 -12.13203 -12.05744 -12.02624 -11.90459 -11.32242 -10.97243 -10.49533 -10.15509 -9.75264 -9.48313 -9.28988 -8.53057 -8.46520 -6.11087 -0.31193 0.54386 1.10946 1.37654 1.49834 1.54407 1.97030 2.17953 2.33444 2.54884 2.86203 2.90079 3.14591 3.35436 3.52015 3.81678 3.88544 3.90557 3.99896 4.11696 4.15363 4.24281 4.28361 4.29944 4.33755 4.39764 4.41386 4.51860 4.55924 4.60152 4.64304 4.69111 4.69715 4.70379 4.77025 4.85496 4.91127 4.97840 5.03736 5.06738 5.09766 5.17017 5.26283 5.35455 5.46493 5.50945 5.65681 5.77245 5.91883 5.97472 5.98022 5.99580 6.45315 6.59143 6.95826 7.22805 7.75973 8.74998 Molecular weight = 360.19amu Principal moments of inertia in cm(-1) A = 0.011592 B = 0.002134 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.811642 B =13116.029204 C =15351.482077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.343 6.343 3 C 0.038 3.962 4 C -0.134 4.134 5 C -0.133 4.133 6 C 0.015 3.985 7 C -0.244 4.244 8 C 0.549 3.451 9 O -0.576 6.576 10 N -0.610 5.610 11 C 0.105 3.895 12 C 0.040 3.960 13 N -0.551 5.551 14 C 0.025 3.975 15 C 0.051 3.949 16 C 0.146 3.854 17 H 0.084 0.916 18 C -0.126 4.126 19 C -0.065 4.065 20 C -0.217 4.217 21 C 0.101 3.899 22 O -0.211 6.211 23 C -0.416 4.416 24 H 0.111 0.889 25 C -0.022 4.022 26 N -0.915 5.915 27 Si 1.021 2.979 28 H -0.254 1.254 29 H -0.275 1.275 30 H -0.254 1.254 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.154 0.846 35 H 0.127 0.873 36 H 0.149 0.851 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.029 0.971 41 H 0.022 0.978 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.101 0.899 45 H 0.026 0.974 46 H 0.046 0.954 47 H 0.064 0.936 48 H 0.056 0.944 49 H 0.156 0.844 50 H 0.138 0.862 51 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.621 26.502 1.311 27.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.259 6.259 3 C -0.007 4.007 4 C -0.153 4.153 5 C -0.134 4.134 6 C -0.005 4.005 7 C -0.264 4.264 8 C 0.342 3.658 9 O -0.459 6.459 10 N -0.342 5.342 11 C -0.017 4.017 12 C -0.089 4.089 13 N -0.275 5.275 14 C -0.122 4.122 15 C -0.078 4.078 16 C 0.043 3.957 17 H 0.102 0.898 18 C -0.184 4.184 19 C -0.083 4.083 20 C -0.236 4.236 21 C 0.049 3.951 22 O -0.117 6.117 23 C -0.491 4.491 24 H 0.128 0.872 25 C -0.221 4.221 26 N -0.551 5.551 27 Si 0.840 3.160 28 H -0.178 1.178 29 H -0.200 1.200 30 H -0.178 1.178 31 H 0.128 0.872 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.172 0.828 35 H 0.144 0.856 36 H 0.167 0.833 37 H 0.123 0.877 38 H 0.105 0.895 39 H 0.127 0.873 40 H 0.048 0.952 41 H 0.041 0.959 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.119 0.881 45 H 0.044 0.956 46 H 0.065 0.935 47 H 0.082 0.918 48 H 0.075 0.925 49 H 0.174 0.826 50 H 0.156 0.844 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.060 25.985 0.887 26.697 hybrid contribution 0.288 -0.769 0.859 1.188 sum -5.771 25.216 1.746 25.927 Atomic orbital electron populations 1.23273 0.77124 1.04972 1.02049 1.86192 1.22924 1.26859 1.89883 1.18385 0.89170 0.85788 1.07396 1.21243 1.00069 0.90061 1.03900 1.18534 0.93049 0.91982 1.09850 1.22117 0.99252 0.90334 0.88829 1.22933 1.01086 0.91261 1.11160 1.18498 0.87236 0.84393 0.75691 1.90833 1.15278 1.87555 1.52186 1.48149 1.07976 1.05613 1.72483 1.22039 0.78263 1.00703 1.00744 1.22480 1.00332 0.89225 0.96828 1.61974 1.03738 1.07075 1.54750 1.22417 1.01757 0.94369 0.93676 1.22531 0.88691 0.99932 0.96642 1.21420 0.91463 0.83326 0.99510 0.89833 1.22003 0.93508 1.00220 1.02637 1.21269 0.92551 0.97864 0.96621 1.21033 1.01144 0.90732 1.10699 1.19585 0.89529 0.88180 0.97800 1.83976 1.20242 1.27840 1.79625 1.21954 0.78814 0.95905 1.52459 0.87215 1.26694 1.06215 0.93527 0.95646 1.70198 1.38634 0.98811 1.47481 0.84618 0.72999 0.78303 0.80119 1.17793 1.19994 1.17833 0.87231 0.91639 0.91662 0.82825 0.85555 0.83327 0.87651 0.89515 0.87272 0.95235 0.95897 0.90067 0.90353 0.88060 0.95570 0.93500 0.91761 0.92526 0.82633 0.84403 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.81 113.37 1.11 1.69 16 2 O -0.34 -15.18 10.28 -79.06 -0.81 -15.99 16 3 C 0.04 1.64 6.70 22.56 0.15 1.79 16 4 C -0.13 -4.58 8.77 22.65 0.20 -4.38 16 5 C -0.13 -4.16 5.87 -20.13 -0.12 -4.28 16 6 C 0.01 0.39 9.45 23.82 0.23 0.61 16 7 C -0.24 -5.66 8.72 23.61 0.21 -5.46 16 8 C 0.55 13.75 7.53 86.33 0.65 14.40 16 9 O -0.58 -17.67 11.74 -4.44 -0.05 -17.72 16 10 N -0.61 -12.01 3.02 -800.10 -2.41 -14.43 16 11 C 0.10 1.46 6.44 86.20 0.56 2.01 16 12 C 0.04 0.50 5.60 86.23 0.48 0.98 16 13 N -0.55 -7.27 4.88 -922.39 -4.51 -11.78 16 14 C 0.03 0.24 9.58 127.69 1.22 1.47 16 15 C 0.05 0.74 4.91 86.38 0.42 1.16 16 16 C 0.15 2.60 3.65 44.96 0.16 2.77 16 17 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 18 C -0.13 -2.58 7.61 71.98 0.55 -2.03 16 19 C -0.07 -2.07 9.40 22.57 0.21 -1.86 16 20 C -0.22 -8.82 9.14 22.33 0.20 -8.62 16 21 C 0.10 5.00 6.67 22.80 0.15 5.16 16 22 O -0.21 -12.70 9.52 -6.49 -0.06 -12.77 16 23 C -0.42 -23.54 9.48 67.93 0.64 -22.89 16 24 H 0.11 5.50 5.18 -2.91 -0.02 5.48 16 25 C -0.02 -1.24 5.49 84.85 0.47 -0.78 16 26 N -0.91 -55.85 13.67 21.62 0.30 -55.55 16 27 Si 1.02 41.36 29.55 68.60 2.03 43.39 16 28 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 29 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 30 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 31 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.07 1.62 7.66 -2.39 -0.02 1.60 16 33 H 0.06 1.62 7.66 -2.38 -0.02 1.60 16 34 H 0.15 4.23 6.28 -2.91 -0.02 4.21 16 35 H 0.13 3.34 7.53 -2.91 -0.02 3.32 16 36 H 0.15 2.72 3.95 -2.91 -0.01 2.71 16 37 H 0.11 1.24 5.46 -2.39 -0.01 1.23 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.11 0.95 8.06 -2.39 -0.02 0.93 16 40 H 0.03 0.44 8.14 -2.38 -0.02 0.42 16 41 H 0.02 0.23 8.14 -2.38 -0.02 0.22 16 42 H 0.08 0.61 8.08 -2.38 -0.02 0.59 16 43 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.10 1.13 8.11 -2.39 -0.02 1.11 16 45 H 0.03 0.45 8.14 -2.38 -0.02 0.43 16 46 H 0.05 1.17 6.86 -2.39 -0.02 1.15 16 47 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.06 1.41 6.69 -2.39 -0.02 1.39 16 49 H 0.16 3.59 6.15 -2.91 -0.02 3.57 16 50 H 0.14 5.47 5.61 -2.91 -0.02 5.45 16 51 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -77.18 405.56 2.93 -74.25 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 0.95 Total: 28.84 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: 7.50 Total: -18.24 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -6.62 Total: -81.75 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -0.93 Total: -46.47 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -77.18 2.93 -74.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089937709.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.995 kcal (2) G-P(sol) polarization free energy of solvation -77.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds