Wall clock time and date at job start Tue Mar 31 2020 05:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86801 * 119.99883 * 2 1 4 4 H 1.48502 * 109.47100 * 272.93670 * 3 2 1 5 5 H 1.48499 * 109.47333 * 32.93699 * 3 2 1 6 6 H 1.48504 * 109.47206 * 152.94256 * 3 2 1 7 7 C 1.38811 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00051 * 339.34966 * 7 2 1 9 9 N 1.36942 * 119.99940 * 159.34604 * 7 2 1 10 10 C 1.46924 * 120.63050 * 332.63411 * 9 7 2 11 11 C 1.53196 * 108.77642 * 233.58648 * 10 9 7 12 12 C 1.53041 * 109.31020 * 305.36265 * 11 10 9 13 13 C 1.52993 * 109.46179 * 181.38116 * 12 11 10 14 14 N 1.46502 * 109.47583 * 174.97011 * 13 12 11 15 15 C 1.34776 * 120.00268 * 179.97438 * 14 13 12 16 16 O 1.21515 * 119.99871 * 0.02562 * 15 14 13 17 17 C 1.48158 * 119.99800 * 180.02562 * 15 14 13 18 18 C 1.39962 * 120.89263 * 359.97438 * 17 15 14 19 19 C 1.37986 * 119.13082 * 180.02562 * 18 17 15 20 20 N 1.31901 * 120.97674 * 359.72479 * 19 18 17 21 21 C 1.32169 * 121.97626 * 0.57067 * 20 19 18 22 22 O 1.35679 * 119.62953 * 179.70501 * 21 20 19 23 23 C 1.42906 * 116.99902 * 359.72618 * 22 21 20 24 24 C 1.53776 * 113.61559 * 247.49967 * 23 22 21 25 25 C 1.53780 * 87.08090 * 220.01806 * 24 23 22 26 26 C 1.53779 * 113.61461 * 149.99935 * 23 22 21 27 27 C 1.38897 * 120.75026 * 359.42753 * 21 20 19 28 28 C 1.53046 * 109.52811 * 61.36978 * 12 11 10 29 29 C 1.46927 * 120.63166 * 152.60690 * 9 7 2 30 30 H 0.97003 * 120.00453 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.58998 * 113.79709 * 10 9 7 32 32 H 1.08999 * 109.70561 * 353.44198 * 10 9 7 33 33 H 1.08994 * 109.49846 * 185.41668 * 11 10 9 34 34 H 1.09001 * 109.52236 * 65.33080 * 11 10 9 35 35 H 1.08996 * 109.46073 * 301.36058 * 12 11 10 36 36 H 1.09007 * 109.47036 * 54.97420 * 13 12 11 37 37 H 1.08997 * 109.47574 * 294.98179 * 13 12 11 38 38 H 0.96998 * 119.99421 * 0.02562 * 14 13 12 39 39 H 1.08000 * 120.43447 * 0.02562 * 18 17 15 40 40 H 1.08007 * 119.50929 * 180.02562 * 19 18 17 41 41 H 1.09001 * 112.84759 * 18.80678 * 23 22 21 42 42 H 1.09006 * 113.61134 * 334.56177 * 24 23 22 43 43 H 1.08994 * 113.61916 * 105.46642 * 24 23 22 44 44 H 1.09002 * 113.61594 * 270.88352 * 25 24 23 45 45 H 1.08996 * 113.61637 * 139.97985 * 25 24 23 46 46 H 1.09004 * 113.61664 * 254.53309 * 26 23 22 47 47 H 1.08997 * 113.61694 * 25.34721 * 26 23 22 48 48 H 1.07997 * 120.52482 * 180.25475 * 27 21 20 49 49 H 1.09009 * 109.49421 * 58.57958 * 28 12 11 50 50 H 1.08998 * 109.50022 * 178.67568 * 28 12 11 51 51 H 1.09001 * 109.58925 * 246.20403 * 29 9 7 52 52 H 1.09000 * 109.58321 * 6.48638 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4354 2.0823 -1.3983 5 1 1.4800 2.6340 0.7612 6 1 3.5774 1.4231 0.6369 7 6 2.0102 -1.2021 0.0005 8 1 1.5223 -2.1072 0.3308 9 7 3.3136 -1.2404 -0.4178 10 6 3.8173 -0.2594 -1.3887 11 6 4.4622 -1.0097 -2.5583 12 6 5.5290 -1.9657 -2.0197 13 6 6.1993 -2.6918 -3.1877 14 7 7.3002 -3.5163 -2.6832 15 6 8.0385 -4.2512 -3.5383 16 8 7.7914 -4.2295 -4.7279 17 6 9.1515 -5.0854 -3.0279 18 6 9.4527 -5.1238 -1.6616 19 6 10.4975 -5.9129 -1.2261 20 7 11.2067 -6.6302 -2.0760 21 6 10.9618 -6.6205 -3.3748 22 8 11.7253 -7.3724 -4.2070 23 6 12.7732 -8.1394 -3.6104 24 6 14.1829 -7.6576 -3.9915 25 6 14.5785 -9.1406 -4.0867 26 6 13.0964 -9.4366 -4.3703 27 6 9.9280 -5.8536 -3.8968 28 6 4.8750 -2.9907 -1.0901 29 6 4.2351 -2.2629 0.0963 30 1 -0.4851 0.8400 -0.0004 31 1 4.5597 0.3798 -0.9107 32 1 2.9923 0.3507 -1.7564 33 1 4.9247 -0.2946 -3.2385 34 1 3.6999 -1.5781 -3.0912 35 1 6.2780 -1.3994 -1.4661 36 1 6.5885 -1.9597 -3.8954 37 1 5.4687 -3.3275 -3.6878 38 1 7.4972 -3.5338 -1.7336 39 1 8.8750 -4.5435 -0.9575 40 1 10.7351 -5.9475 -0.1730 41 1 12.6345 -8.2840 -2.5390 42 1 14.2218 -7.1333 -4.9464 43 1 14.6920 -7.1204 -3.1914 44 1 14.9349 -9.5587 -3.1452 45 1 15.2368 -9.3639 -4.9262 46 1 12.7282 -10.3356 -3.8759 47 1 12.8369 -9.3992 -5.4283 48 1 9.7285 -5.8516 -4.9582 49 1 4.1085 -3.5403 -1.6365 50 1 5.6313 -3.6857 -0.7253 51 1 5.0115 -1.7871 0.6953 52 1 3.6845 -2.9751 0.7107 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090054599.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:43 Heat of formation + Delta-G solvation = -16.237298 kcal Electronic energy + Delta-G solvation = -31128.455428 eV Core-core repulsion = 26900.678405 eV Total energy + Delta-G solvation = -4227.777023 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.200 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.99956 -40.92958 -39.88815 -39.39705 -37.39709 -36.58060 -34.67676 -33.78912 -32.78965 -31.85689 -31.45694 -28.75204 -26.81421 -26.65433 -25.86547 -24.86957 -24.38234 -24.06429 -22.78803 -21.87546 -20.91864 -20.58484 -19.90353 -18.75755 -18.43659 -17.68535 -17.14208 -16.99919 -16.78676 -16.63876 -16.36956 -16.06181 -15.88916 -15.78183 -15.34773 -15.24582 -15.11490 -14.95171 -14.79277 -14.41884 -14.17959 -13.94611 -13.63401 -13.47491 -13.44550 -13.40202 -13.01010 -12.92947 -12.52695 -12.47708 -12.25160 -12.23153 -12.10328 -11.74315 -11.60067 -11.55359 -11.38123 -11.26727 -11.19901 -11.18744 -11.08499 -10.71212 -10.63594 -10.18282 -9.57944 -8.89330 -8.14692 -5.45598 -0.43709 0.06829 1.31996 1.42798 1.52058 1.73653 1.74732 2.18259 2.43762 2.72948 3.08342 3.21867 3.40003 3.45870 3.57379 3.58737 3.76544 3.85828 3.87206 3.88193 3.89443 3.96719 3.99679 4.07907 4.40831 4.44947 4.52855 4.57183 4.61333 4.64882 4.67575 4.74315 4.75642 4.78016 4.79768 4.90900 4.95897 4.96534 5.01731 5.04016 5.09674 5.10179 5.18589 5.20942 5.23381 5.29513 5.31256 5.45846 5.61786 5.89756 6.14917 6.22445 6.38976 6.71184 6.96118 7.03148 7.66877 8.06313 9.05438 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.031747 B = 0.001546 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.757916 B =18105.421801 C =18378.678294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.039 4.039 3 Si 0.950 3.050 4 H -0.276 1.276 5 H -0.314 1.314 6 H -0.256 1.256 7 C -0.248 4.248 8 H 0.048 0.952 9 N -0.621 5.621 10 C 0.119 3.881 11 C -0.121 4.121 12 C -0.080 4.080 13 C 0.133 3.867 14 N -0.698 5.698 15 C 0.557 3.443 16 O -0.572 6.572 17 C -0.059 4.059 18 C -0.168 4.168 19 C 0.144 3.856 20 N -0.535 5.535 21 C 0.310 3.690 22 O -0.308 6.308 23 C 0.047 3.953 24 C -0.153 4.153 25 C -0.127 4.127 26 C -0.137 4.137 27 C -0.156 4.156 28 C -0.120 4.120 29 C 0.141 3.859 30 H 0.260 0.740 31 H 0.039 0.961 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.417 0.583 39 H 0.178 0.822 40 H 0.206 0.794 41 H 0.116 0.884 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.098 0.902 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.137 0.863 49 H 0.045 0.955 50 H 0.093 0.907 51 H 0.044 0.956 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.369 -15.617 -3.904 36.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.233 4.233 3 Si 0.779 3.221 4 H -0.203 1.203 5 H -0.244 1.244 6 H -0.180 1.180 7 C -0.378 4.378 8 H 0.066 0.934 9 N -0.346 5.346 10 C -0.005 4.005 11 C -0.161 4.161 12 C -0.098 4.098 13 C 0.009 3.991 14 N -0.351 5.351 15 C 0.343 3.657 16 O -0.452 6.452 17 C -0.070 4.070 18 C -0.189 4.189 19 C -0.012 4.012 20 N -0.260 5.260 21 C 0.132 3.868 22 O -0.215 6.215 23 C -0.009 4.009 24 C -0.191 4.191 25 C -0.165 4.165 26 C -0.175 4.175 27 C -0.177 4.177 28 C -0.159 4.159 29 C 0.017 3.983 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.256 0.744 39 H 0.195 0.805 40 H 0.223 0.777 41 H 0.134 0.866 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.117 0.883 45 H 0.107 0.893 46 H 0.102 0.898 47 H 0.106 0.894 48 H 0.155 0.845 49 H 0.064 0.936 50 H 0.111 0.889 51 H 0.062 0.938 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 32.722 -16.075 -4.713 36.761 hybrid contribution -1.241 1.410 0.031 1.878 sum 31.482 -14.665 -4.682 35.044 Atomic orbital electron populations 1.69980 1.07588 1.27142 1.55976 1.25934 0.95808 1.01132 1.00418 0.85867 0.78865 0.79995 0.77413 1.20325 1.24353 1.17995 1.18878 0.87146 0.93367 1.38386 0.93379 1.44499 1.07723 1.34892 1.47524 1.21389 0.96699 0.92048 0.90400 1.21889 0.97835 0.98790 0.97579 1.21193 0.97004 0.96272 0.95374 1.21385 0.87747 0.93548 0.96417 1.45761 1.32439 1.45327 1.11555 1.18347 0.82015 0.79647 0.85664 1.90784 1.70659 1.66236 1.17529 1.20058 0.95255 0.96734 0.94926 1.22534 1.00251 1.02034 0.94034 1.23108 0.89058 0.88674 1.00336 1.67175 1.31727 1.24697 1.02382 1.19698 0.89493 0.90246 0.87403 1.86351 1.44204 1.56425 1.34545 1.24501 0.84459 0.92127 0.99780 1.23453 0.94643 0.98368 1.02594 1.22628 0.95447 0.94679 1.03697 1.23303 0.96846 0.95846 1.01459 1.21097 0.95835 0.98781 1.02028 1.21985 0.99702 0.97416 0.96780 1.21148 0.92063 0.90419 0.94708 0.93104 0.94350 0.93758 0.89952 0.93034 0.88698 0.91095 0.92429 0.74364 0.80508 0.77707 0.86635 0.89878 0.90487 0.88349 0.89342 0.89755 0.89439 0.84476 0.93632 0.88890 0.93829 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.48 13.97 21.65 0.30 -60.17 16 2 C -0.04 -2.24 5.23 84.86 0.44 -1.79 16 3 Si 0.95 45.80 24.35 68.60 1.67 47.47 16 4 H -0.28 -12.64 6.62 99.48 0.66 -11.98 16 5 H -0.31 -15.57 7.11 99.48 0.71 -14.86 16 6 H -0.26 -11.52 6.64 99.48 0.66 -10.86 16 7 C -0.25 -13.84 10.04 84.03 0.84 -13.00 16 8 H 0.05 2.96 8.06 -2.91 -0.02 2.94 16 9 N -0.62 -27.59 2.77 -699.09 -1.94 -29.53 16 10 C 0.12 4.71 4.20 86.36 0.36 5.07 16 11 C -0.12 -3.66 5.36 30.67 0.16 -3.49 16 12 C -0.08 -1.83 2.19 -10.77 -0.02 -1.86 16 13 C 0.13 2.86 5.06 86.38 0.44 3.30 16 14 N -0.70 -12.33 5.23 -465.67 -2.44 -14.77 16 15 C 0.56 12.72 7.80 86.88 0.68 13.39 16 16 O -0.57 -18.13 16.44 -3.76 -0.06 -18.19 16 17 C -0.06 -1.11 5.91 -19.90 -0.12 -1.22 16 18 C -0.17 -1.88 9.61 22.63 0.22 -1.66 16 19 C 0.14 1.57 11.17 84.62 0.94 2.51 16 20 N -0.54 -9.05 8.56 -309.14 -2.65 -11.70 16 21 C 0.31 6.36 7.49 84.80 0.63 7.00 16 22 O -0.31 -6.32 10.13 -89.97 -0.91 -7.24 16 23 C 0.05 0.70 4.18 31.12 0.13 0.83 16 24 C -0.15 -1.80 7.91 31.12 0.25 -1.55 16 25 C -0.13 -1.00 8.08 31.12 0.25 -0.75 16 26 C -0.14 -1.50 7.91 31.12 0.25 -1.25 16 27 C -0.16 -3.39 9.61 22.75 0.22 -3.17 16 28 C -0.12 -3.03 5.25 30.67 0.16 -2.87 16 29 C 0.14 4.76 6.52 86.36 0.56 5.32 16 30 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 31 H 0.04 1.42 7.08 -2.39 -0.02 1.40 16 32 H 0.04 2.00 4.50 -2.39 -0.01 1.99 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.42 4.56 5.79 -92.71 -0.54 4.02 16 39 H 0.18 0.68 6.53 -2.91 -0.02 0.66 16 40 H 0.21 0.58 8.06 -2.91 -0.02 0.55 16 41 H 0.12 1.71 6.87 -2.39 -0.02 1.70 16 42 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 43 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 47 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.14 3.31 7.74 -2.91 -0.02 3.29 16 49 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 50 H 0.09 1.60 7.15 -2.39 -0.02 1.58 16 51 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 52 H 0.05 1.83 7.93 -2.39 -0.02 1.81 16 Total: -1.00 -77.01 409.16 0.68 -76.33 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.30 Total: 12.99 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 6.40 Total: 4.80 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -6.71 Total: -116.17 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.97 Total: -25.42 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.67 Total: 47.47 kcal Total: -77.01 0.68 -76.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090054599.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.094 kcal (2) G-P(sol) polarization free energy of solvation -77.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds